Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 543-664 |
| Cow position: | chr10:6549309-6549429 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 94 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 678-1029 |
| Cow position: | chr10:1701601-1701962 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 252 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 30, 16 |
| Conread position: | 700-984 |
| Cow position: | chr10:19592678-19592398 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 40 |
| Conread position: | 700-1034 |
| Cow position: | chr10:2603749-2603409 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 703-893 |
| Cow position: | chr10:65165892-65166071 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 707-1051 |
| Cow position: | chr10:66008553-66008209 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 26 |
| Conread position: | 711-875 |
| Cow position: | chr10:51730581-51730743 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 711-891 |
| Cow position: | chr10:20867618-20867443 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 711-980 |
| Cow position: | chr10:24082006-24081756 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 67, 34 |
| Conread position: | 711-1031 |
| Cow position: | chr10:8803807-8804133 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 168 |
| Conread position: | 711-1036 |
| Cow position: | chr10:30556500-30556175 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 30, 177 |
| Conread position: | 712-973 |
| Cow position: | chr10:53416442-53416694 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 28 |
| Conread position: | 713-896 |
| Cow position: | chr10:7862384-7862562 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 61, 78 |
| Conread position: | 713-908 |
| Cow position: | chr10:38116378-38116188 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 113, 27 |
| Conread position: | 713-908 |
| Cow position: | chr10:42553674-42553467 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 176 |
| Conread position: | 713-1043 |
| Cow position: | chr10:60752579-60752250 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 138 |
| Conread position: | 713-1043 |
| Cow position: | chr10:61979857-61979534 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 61, 125 |
| Conread position: | 720-893 |
| Cow position: | chr10:18522315-18522144 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 149 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 720-975 |
| Cow position: | chr10:44030054-44030316 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 721-892 |
| Cow position: | chr10:54314214-54314042 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 157 |
| Conread position: | 722-871 |
| Cow position: | chr10:1475762-1475911 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 106, 18 |
| Conread position: | 722-892 |
| Cow position: | chr10:56336649-56336813 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 722-1056 |
| Cow position: | chr10:65898501-65898831 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 28 |
| Conread position: | 723-870 |
| Cow position: | chr10:1336487-1336636 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 147 |
| Conread position: | 723-893 |
| Cow position: | chr10:16781510-16781338 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 55, 28 |
| Conread position: | 723-927 |
| Cow position: | chr10:13113473-13113675 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 167 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 727-987 |
| Cow position: | chr10:52960082-52959821 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 729-901 |
| Cow position: | chr10:13132149-13132325 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 730-890 |
| Cow position: | chr10:28840042-28840208 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 741-865 |
| Cow position: | chr10:59644168-59644294 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 102 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 741-893 |
| Cow position: | chr10:63543040-63542892 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 10, 105 |
| Conread position: | 743-1043 |
| Cow position: | chr10:3533211-3532908 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 26, 123 |
| Conread position: | 750-983 |
| Cow position: | chr10:49305682-49305910 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 753-914 |
| Cow position: | chr10:58375732-58375895 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 784-967 |
| Cow position: | chr10:63994816-63994996 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 801-975 |
| Cow position: | chr10:21694069-21693896 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 804-994 |
| Cow position: | chr10:16898624-16898434 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 141, 32 |
| Conread position: | 816-974 |
| Cow position: | chr10:6691439-6691599 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 824-967 |
| Cow position: | chr10:16762502-16762361 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 825-975 |
| Cow position: | chr10:68098019-68098166 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 120, 52 |
| Conread position: | 825-1026 |
| Cow position: | chr10:15881868-15881669 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 861-1068 |
| Cow position: | chr10:63374914-63374698 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 84, 16 |
| Conread position: | 1046-1223 |
| Cow position: | chr10:483370-483551 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 16, 105 |
| Conread position: | 1046-1363 |
| Cow position: | chr10:25923505-25923181 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 21, 100 |
| Conread position: | 1048-1364 |
| Cow position: | chr10:34428416-34428733 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 36, 151 |
| Conread position: | 1049-1257 |
| Cow position: | chr10:28798856-28799060 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 132 |
| Conread position: | 1049-1359 |
| Cow position: | chr10:6162578-6162891 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 104 |
| Conread position: | 1054-1364 |
| Cow position: | chr10:42430055-42430352 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 96 |
| Conread position: | 1056-1348 |
| Cow position: | chr10:20934197-20934506 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 26 |
Show alignments to all cow chromosomes.