Cow genome map

Conread name: Ss1.1-rtra04_n22.5

Conread position: 684-908
Cow position: chr11:16210289-16210518 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 175
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 24, 195

Conread position: 706-966
Cow position: chr11:8173201-8172943 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 5

Conread position: 711-890
Cow position: chr11:55386552-55386375 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 63, 29

Conread position: 711-893
Cow position: chr11:43062334-43062516 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 63, 35

Conread position: 711-893
Cow position: chr11:62034854-62035033 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 53

Conread position: 711-893
Cow position: chr11:84783860-84783669 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 711-995
Cow position: chr11:48448410-48448141 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 211
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 63, 29

Conread position: 713-893
Cow position: chr11:43078041-43078226 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 61, 34

Conread position: 713-1024
Cow position: chr11:57527731-57528056 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 61, 27

Conread position: 713-1053
Cow position: chr11:82584941-82585292 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 252
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 61, 72

Conread position: 716-962
Cow position: chr11:8014082-8014322 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 184
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 29, 50

Conread position: 720-893
Cow position: chr11:20555608-20555776 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 54, 18

Conread position: 720-1026
Cow position: chr11:16102095-16102395 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 20

Conread position: 722-975
Cow position: chr11:17243236-17243481 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 18

Conread position: 722-1050
Cow position: chr11:24209877-24209558 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 157

Conread position: 723-908
Cow position: chr11:74915670-74915855 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 31, 17

Conread position: 723-1053
Cow position: chr11:73308607-73308266 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 23

Conread position: 725-1074
Cow position: chr11:29965858-29966192 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 96

Conread position: 727-891
Cow position: chr11:34443755-34443591 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 133
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 47, 19

Conread position: 729-915
Cow position: chr11:82530404-82530589 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 51, 22

Conread position: 739-898
Cow position: chr11:2772013-2772173 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 39, 139

Conread position: 741-893
Cow position: chr11:26085319-26085472 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 37, 137

Conread position: 746-893
Cow position: chr11:34039738-34039588 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 121
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 33, 134

Conread position: 751-892
Cow position: chr11:37936064-37935922 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 127

Conread position: 751-894
Cow position: chr11:62702212-62702068 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 23, 127

Conread position: 768-1043
Cow position: chr11:48961818-48962108 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 87

Conread position: 771-1044
Cow position: chr11:21905288-21905560 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 194
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 155, 41

Conread position: 779-987
Cow position: chr11:43885980-43885775 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 99

Conread position: 780-908
Cow position: chr11:58902895-58902768 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 106
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 35, 93

Conread position: 784-975
Cow position: chr11:28082567-28082750 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 42, 64

Conread position: 807-1042
Cow position: chr11:81485046-81485289 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 186
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 8, 72

Conread position: 818-919
Cow position: chr11:48049134-48049034 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 827-974
Cow position: chr11:44696943-44697090 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 99, 50

Conread position: 863-1042
Cow position: chr11:23034336-23034150 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 66

Conread position: 886-1042
Cow position: chr11:43062477-43062639 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 61, 42

Conread position: 1041-1364
Cow position: chr11:9240889-9241226 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 228
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 1041-1366
Cow position: chr11:81453937-81454255 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 26, 94

Conread position: 1044-1368
Cow position: chr11:26443583-26443898 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 23, 50

Conread position: 1046-1243
Cow position: chr11:38183293-38183493 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 148
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 174

Conread position: 1049-1207
Cow position: chr11:20582361-20582199 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 104

Conread position: 1049-1364
Cow position: chr11:38923625-38923942 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 211
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 100

Conread position: 1050-1348
Cow position: chr11:51045152-51044847 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 215
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 18, 157

Conread position: 1053-1364
Cow position: chr11:28498289-28497971 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 24, 193

Show alignments to all cow chromosomes.