Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 711-888 |
| Cow position: | chr12:29295536-29295711 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 711-893 |
| Cow position: | chr12:2819483-2819307 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 115, 59 |
| Conread position: | 711-897 |
| Cow position: | chr12:6250961-6250781 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 63, 9 |
| Conread position: | 711-908 |
| Cow position: | chr12:38397685-38397881 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 15 |
| Conread position: | 711-975 |
| Cow position: | chr12:21771580-21771840 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 63, 90 |
| Conread position: | 711-1061 |
| Cow position: | chr12:790896-791252 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 713-927 |
| Cow position: | chr12:46079017-46078801 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 720-893 |
| Cow position: | chr12:9598594-9598420 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 146 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 54, 158 |
| Conread position: | 722-888 |
| Cow position: | chr12:26039340-26039511 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 37, 157 |
| Conread position: | 722-895 |
| Cow position: | chr12:47786624-47786456 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 723-893 |
| Cow position: | chr12:26281131-26280960 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 724-893 |
| Cow position: | chr12:6113681-6113838 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 101, 37 |
| Conread position: | 726-885 |
| Cow position: | chr12:38662495-38662655 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 48, 152 |
| Conread position: | 727-893 |
| Cow position: | chr12:33465411-33465246 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 735-1043 |
| Cow position: | chr12:38395427-38395730 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 37, 143 |
| Conread position: | 740-891 |
| Cow position: | chr12:33894146-33894297 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 34, 51 |
| Conread position: | 740-893 |
| Cow position: | chr12:16722835-16722989 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 34, 138 |
| Conread position: | 742-976 |
| Cow position: | chr12:3842732-3842493 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 31, 141 |
| Conread position: | 745-979 |
| Cow position: | chr12:35323489-35323257 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 33, 47 |
| Conread position: | 765-1058 |
| Cow position: | chr12:31733274-31733571 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 78 |
| Conread position: | 818-1074 |
| Cow position: | chr12:46106747-46106489 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 851-1030 |
| Cow position: | chr12:743636-743452 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 94, 26 |
| Conread position: | 879-1000 |
| Cow position: | chr12:27400539-27400415 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 66, 48 |
| Conread position: | 895-1047 |
| Cow position: | chr12:10840081-10840232 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 1020-1351 |
| Cow position: | chr12:8829720-8829370 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 35, 229 |
| Conread position: | 1051-1364 |
| Cow position: | chr12:34441196-34440889 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 142, 104 |
| Conread position: | 1068-1364 |
| Cow position: | chr12:31172964-31172677 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 41, 14 |
Show alignments to all cow chromosomes.