Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 641-891 |
| Cow position: | chr13:3937868-3938116 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 34, 8 |
| Conread position: | 700-1044 |
| Cow position: | chr13:46717002-46716664 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 703-967 |
| Cow position: | chr13:19501276-19501026 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 9 |
| Conread position: | 711-891 |
| Cow position: | chr13:1916904-1917087 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 169 |
| Conread position: | 714-882 |
| Cow position: | chr13:12449701-12449536 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 61, 7 |
| Conread position: | 716-893 |
| Cow position: | chr13:15231387-15231210 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 720-893 |
| Cow position: | chr13:20518377-20518552 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 721-908 |
| Cow position: | chr13:9226373-9226556 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 24, 46 |
| Conread position: | 722-868 |
| Cow position: | chr13:16221217-16221069 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 722-893 |
| Cow position: | chr13:12854191-12854016 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 722-1042 |
| Cow position: | chr13:60471906-60471575 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 157 |
| Conread position: | 722-1044 |
| Cow position: | chr13:12208497-12208810 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 740-884 |
| Cow position: | chr13:13073802-13073944 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 745-949 |
| Cow position: | chr13:9008332-9008536 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 53 |
| Conread position: | 745-987 |
| Cow position: | chr13:15004730-15004488 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 185 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 33, 111 |
| Conread position: | 745-996 |
| Cow position: | chr13:44015401-44015640 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 133 |
| Conread position: | 748-1031 |
| Cow position: | chr13:13957153-13956888 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 26, 125 |
| Conread position: | 762-972 |
| Cow position: | chr13:7074529-7074727 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 768-998 |
| Cow position: | chr13:23510098-23509874 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 802-1042 |
| Cow position: | chr13:4607923-4608167 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 804-1042 |
| Cow position: | chr13:21936616-21936853 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 22, 80 |
| Conread position: | 805-978 |
| Cow position: | chr13:49611352-49611178 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 21, 32 |
| Conread position: | 807-1042 |
| Cow position: | chr13:34799149-34799376 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 808-975 |
| Cow position: | chr13:9557814-9557648 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1042-1364 |
| Cow position: | chr13:39694219-39693888 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 1043-1274 |
| Cow position: | chr13:18748258-18748485 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 20, 101 |
| Conread position: | 1043-1364 |
| Cow position: | chr13:22190060-22189740 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 1045-1364 |
| Cow position: | chr13:7646862-7647182 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 65, 45 |
| Conread position: | 1046-1356 |
| Cow position: | chr13:34109290-34108981 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 10, 151 |
| Conread position: | 1046-1364 |
| Cow position: | chr13:10729375-10729702 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 39, 96 |
| Conread position: | 1048-1364 |
| Cow position: | chr13:42003845-42003528 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 20, 41 |
| Conread position: | 1062-1359 |
| Cow position: | chr13:2904854-2905154 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 57, 134 |
| Conread position: | 1081-1364 |
| Cow position: | chr13:48052154-48051868 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 35, 181 |
| Conread position: | 1087-1367 |
| Cow position: | chr13:37155745-37155461 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 106, 75 |
Show alignments to all cow chromosomes.