Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 700-997 |
| Cow position: | chr15:50582446-50582152 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 80, 11 |
| Conread position: | 711-924 |
| Cow position: | chr15:16292668-16292884 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 67, 20 |
| Conread position: | 711-979 |
| Cow position: | chr15:43748713-43748446 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 711-1019 |
| Cow position: | chr15:26868415-26868733 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 171 |
| Conread position: | 711-1077 |
| Cow position: | chr15:1597090-1596727 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 84 |
| Conread position: | 712-1042 |
| Cow position: | chr15:37798468-37798128 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 713-1012 |
| Cow position: | chr15:29532305-29532609 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 166 |
| Conread position: | 713-1053 |
| Cow position: | chr15:41935427-41935080 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 109, 38 |
| Conread position: | 716-874 |
| Cow position: | chr15:19213909-19213750 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 716-978 |
| Cow position: | chr15:43335421-43335156 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 92, 57 |
| Conread position: | 719-975 |
| Cow position: | chr15:24571290-24571550 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 26, 164 |
| Conread position: | 722-1107 |
| Cow position: | chr15:30154841-30154468 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 724-873 |
| Cow position: | chr15:23930678-23930828 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 21 |
| Conread position: | 728-920 |
| Cow position: | chr15:24920403-24920213 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 731-893 |
| Cow position: | chr15:27871508-27871667 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 746-1018 |
| Cow position: | chr15:5505718-5505443 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 28, 132 |
| Conread position: | 746-1052 |
| Cow position: | chr15:27285441-27285742 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 135 |
| Conread position: | 747-930 |
| Cow position: | chr15:24881222-24881029 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 27, 141 |
| Conread position: | 758-874 |
| Cow position: | chr15:22458398-22458279 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 764-1027 |
| Cow position: | chr15:49473571-49473827 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 10, 62 |
| Conread position: | 773-1026 |
| Cow position: | chr15:29412529-29412772 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 72, 39 |
| Conread position: | 777-1049 |
| Cow position: | chr15:3046771-3047037 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 799-924 |
| Cow position: | chr15:8794088-8794214 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 27, 78 |
| Conread position: | 825-1047 |
| Cow position: | chr15:1859702-1859482 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 119, 51 |
| Conread position: | 831-924 |
| Cow position: | chr15:28793099-28793007 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 80 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 884-1024 |
| Cow position: | chr15:38825215-38825072 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 886-1018 |
| Cow position: | chr15:23535591-23535455 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 42 |
| Conread position: | 1054-1364 |
| Cow position: | chr15:26880098-26880408 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 69, 48 |
Show alignments to all cow chromosomes.