Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 703-893 |
| Cow position: | chr17:29257032-29256836 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 706-872 |
| Cow position: | chr17:7684848-7685014 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 34 |
| Conread position: | 711-875 |
| Cow position: | chr17:39851295-39851465 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 55 |
| Conread position: | 711-893 |
| Cow position: | chr17:12753259-12753441 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 110 |
| Conread position: | 711-897 |
| Cow position: | chr17:13131270-13131084 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 67, 36 |
| Conread position: | 711-1016 |
| Cow position: | chr17:25481494-25481797 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 25, 15 |
| Conread position: | 711-1057 |
| Cow position: | chr17:14229017-14229364 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 63, 134 |
| Conread position: | 713-872 |
| Cow position: | chr17:8505475-8505315 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 713-892 |
| Cow position: | chr17:8708465-8708287 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 61, 36 |
| Conread position: | 713-1019 |
| Cow position: | chr17:26727-27039 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 713-1046 |
| Cow position: | chr17:4065093-4064773 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 61, 37 |
| Conread position: | 722-868 |
| Cow position: | chr17:5763979-5763832 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 722-892 |
| Cow position: | chr17:12779594-12779762 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 53, 80 |
| Conread position: | 722-1010 |
| Cow position: | chr17:37440583-37440290 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 25 |
| Conread position: | 724-908 |
| Cow position: | chr17:17379757-17379572 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 154 |
| Conread position: | 729-1042 |
| Cow position: | chr17:12434200-12433878 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 229 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 83, 151 |
| Conread position: | 741-973 |
| Cow position: | chr17:19093135-19092916 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 33, 57 |
| Conread position: | 747-888 |
| Cow position: | chr17:8237718-8237860 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 27, 131 |
| Conread position: | 753-893 |
| Cow position: | chr17:35244982-35245123 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 127 |
| Conread position: | 781-964 |
| Cow position: | chr17:19116908-19116724 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 45, 97 |
| Conread position: | 797-975 |
| Cow position: | chr17:2000030-2000210 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 814-987 |
| Cow position: | chr17:35172563-35172735 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 825-980 |
| Cow position: | chr17:23381725-23381869 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 120, 55 |
| Conread position: | 827-967 |
| Cow position: | chr17:32876727-32876866 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 118, 50 |
| Conread position: | 852-1070 |
| Cow position: | chr17:3791963-3791744 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 862-1053 |
| Cow position: | chr17:21340539-21340736 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 65 |
| Conread position: | 1043-1235 |
| Cow position: | chr17:13203561-13203371 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 149, 17 |
| Conread position: | 1047-1336 |
| Cow position: | chr17:20144567-20144290 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 145, 15 |
| Conread position: | 1055-1364 |
| Cow position: | chr17:39867798-39868100 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 1057-1327 |
| Cow position: | chr17:40856914-40857195 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 66, 8 |
| Conread position: | 1062-1364 |
| Cow position: | chr17:21054604-21054896 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 46, 163 |
Show alignments to all cow chromosomes.