Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 711-875 |
| Cow position: | chr18:51307943-51308109 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 711-987 |
| Cow position: | chr18:46119123-46119390 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 717-975 |
| Cow position: | chr18:37884289-37884542 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 721-882 |
| Cow position: | chr18:21271501-21271657 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 721-966 |
| Cow position: | chr18:15689480-15689714 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 26 |
| Conread position: | 722-892 |
| Cow position: | chr18:50441241-50441411 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 722-892 |
| Cow position: | chr18:53280261-53280435 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 159 |
| Conread position: | 722-1043 |
| Cow position: | chr18:21766841-21766514 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 157 |
| Conread position: | 723-1042 |
| Cow position: | chr18:3818867-3819193 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 732-883 |
| Cow position: | chr18:37717689-37717538 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 740-908 |
| Cow position: | chr18:4328781-4328613 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 34, 139 |
| Conread position: | 750-874 |
| Cow position: | chr18:30404170-30404296 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 750-886 |
| Cow position: | chr18:48486668-48486533 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 28, 102 |
| Conread position: | 750-893 |
| Cow position: | chr18:4652473-4652329 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 751-907 |
| Cow position: | chr18:56124470-56124315 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 23, 42 |
| Conread position: | 761-975 |
| Cow position: | chr18:52742759-52742971 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 42, 31 |
| Conread position: | 764-972 |
| Cow position: | chr18:27447779-27447987 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 10, 115 |
| Conread position: | 791-980 |
| Cow position: | chr18:21479976-21479798 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 35, 94 |
| Conread position: | 799-975 |
| Cow position: | chr18:11160089-11159918 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 146, 26 |
| Conread position: | 807-926 |
| Cow position: | chr18:31986558-31986676 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 833-972 |
| Cow position: | chr18:41073797-41073658 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 112, 44 |
| Conread position: | 866-990 |
| Cow position: | chr18:21111005-21111132 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 895-1027 |
| Cow position: | chr18:42058945-42059076 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 1043-1260 |
| Cow position: | chr18:37174867-37175089 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1048-1364 |
| Cow position: | chr18:387927-388253 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 1048-1364 |
| Cow position: | chr18:31383515-31383201 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 1048-1364 |
| Cow position: | chr18:33974189-33974510 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 208 |
| Conread position: | 1053-1256 |
| Cow position: | chr18:5542997-5543197 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 139, 67 |
Show alignments to all cow chromosomes.