Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 700-908 |
| Cow position: | chr2:14470023-14469815 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 705-1000 |
| Cow position: | chr2:74381909-74381607 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 180 |
| Conread position: | 706-874 |
| Cow position: | chr2:58503140-58502970 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 66, 7 |
| Conread position: | 709-899 |
| Cow position: | chr2:69379236-69379425 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 8, 32 |
| Conread position: | 710-891 |
| Cow position: | chr2:44068559-44068374 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 31, 121 |
| Conread position: | 711-893 |
| Cow position: | chr2:15145791-15145609 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 133 |
| Conread position: | 711-916 |
| Cow position: | chr2:38151999-38152205 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 711-1023 |
| Cow position: | chr2:51462435-51462747 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 711-1042 |
| Cow position: | chr2:28467091-28466759 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 40 |
| Conread position: | 711-1044 |
| Cow position: | chr2:25075808-25075480 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 63, 34 |
| Conread position: | 713-893 |
| Cow position: | chr2:73769192-73769013 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 713-974 |
| Cow position: | chr2:46776616-46776877 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 232, 60 |
| Conread position: | 720-881 |
| Cow position: | chr2:3316465-3316621 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 722-914 |
| Cow position: | chr2:19522220-19522029 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 52, 157 |
| Conread position: | 722-1030 |
| Cow position: | chr2:58552398-58552704 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 722-1043 |
| Cow position: | chr2:38154536-38154218 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 52, 160 |
| Conread position: | 723-1036 |
| Cow position: | chr2:81997459-81997140 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 45 |
| Conread position: | 724-894 |
| Cow position: | chr2:10796432-10796263 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 50, 61 |
| Conread position: | 727-897 |
| Cow position: | chr2:29510949-29511120 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 47, 19 |
| Conread position: | 730-892 |
| Cow position: | chr2:38672023-38671859 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 22, 145 |
| Conread position: | 740-893 |
| Cow position: | chr2:53441762-53441610 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 34, 7 |
| Conread position: | 741-930 |
| Cow position: | chr2:4492306-4492489 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 79 |
| Conread position: | 741-978 |
| Cow position: | chr2:84274945-84274705 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 137 |
| Conread position: | 741-1044 |
| Cow position: | chr2:65833424-65833115 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 19, 23 |
| Conread position: | 751-1044 |
| Cow position: | chr2:31868897-31869190 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 784-924 |
| Cow position: | chr2:6587649-6587789 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 797-923 |
| Cow position: | chr2:76337760-76337886 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 797-1026 |
| Cow position: | chr2:13652963-13652749 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 801-1027 |
| Cow position: | chr2:621644-621873 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 805-1028 |
| Cow position: | chr2:65441135-65441348 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 21, 33 |
| Conread position: | 822-1042 |
| Cow position: | chr2:22776967-22776755 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 833-966 |
| Cow position: | chr2:27380290-27380422 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 110 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 110, 44 |
| Conread position: | 835-988 |
| Cow position: | chr2:7913684-7913833 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 110, 41 |
| Conread position: | 845-983 |
| Cow position: | chr2:60047619-60047760 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 99, 33 |
| Conread position: | 895-1044 |
| Cow position: | chr2:14486046-14486204 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 28 |
| Conread position: | 895-1063 |
| Cow position: | chr2:76845817-76845657 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 1044-1364 |
| Cow position: | chr2:41049814-41050133 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 221 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 23, 106 |
| Conread position: | 1049-1368 |
| Cow position: | chr2:7427431-7427747 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 17, 187 |
| Conread position: | 1050-1365 |
| Cow position: | chr2:48761417-48761732 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 143, 37 |
| Conread position: | 1054-1263 |
| Cow position: | chr2:11014313-11014103 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 139 |
| Conread position: | 1054-1306 |
| Cow position: | chr2:83244917-83245166 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 14, 58 |
| Conread position: | 1055-1334 |
| Cow position: | chr2:52627611-52627889 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 114, 10 |
| Conread position: | 1062-1205 |
| Cow position: | chr2:64432080-64431933 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1065-1353 |
| Cow position: | chr2:30695913-30695625 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 126, 54 |
| Conread position: | 1119-1359 |
| Cow position: | chr2:38184237-38184472 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 140, 74 |
Show alignments to all cow chromosomes.