Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 2-326 |
| Cow position: | chr27:21258003-21258351 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 63 |
| Conread position: | 339-1026 |
| Cow position: | chr27:21258338-21258995 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 533 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 711-891 |
| Cow position: | chr27:26595009-26595193 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 716-1041 |
| Cow position: | chr27:26917826-26918152 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 237 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 718-1065 |
| Cow position: | chr27:9317196-9316857 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 24, 52 |
| Conread position: | 720-859 |
| Cow position: | chr27:1285850-1285711 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 94 |
| Conread position: | 720-992 |
| Cow position: | chr27:29390056-29390322 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 722-863 |
| Cow position: | chr27:7207710-7207851 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 722-875 |
| Cow position: | chr27:15418659-15418504 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 722-891 |
| Cow position: | chr27:20804448-20804616 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 44, 18 |
| Conread position: | 722-908 |
| Cow position: | chr27:27280398-27280579 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 722-975 |
| Cow position: | chr27:7533637-7533888 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 722-1026 |
| Cow position: | chr27:1090536-1090242 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 231 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 723-872 |
| Cow position: | chr27:5562341-5562488 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 723-890 |
| Cow position: | chr27:18045192-18045023 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 724-861 |
| Cow position: | chr27:4574811-4574672 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 725-888 |
| Cow position: | chr27:15834602-15834763 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 101, 55 |
| Conread position: | 728-1039 |
| Cow position: | chr27:10033620-10033926 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 739-919 |
| Cow position: | chr27:31034599-31034786 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 35, 75 |
| Conread position: | 739-1029 |
| Cow position: | chr27:13818359-13818645 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 740-893 |
| Cow position: | chr27:9414365-9414514 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 745-966 |
| Cow position: | chr27:4569665-4569448 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 133 |
| Conread position: | 747-893 |
| Cow position: | chr27:2129381-2129528 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 29, 131 |
| Conread position: | 747-1035 |
| Cow position: | chr27:15097346-15097637 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 27, 46 |
| Conread position: | 750-891 |
| Cow position: | chr27:9467232-9467090 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 794-969 |
| Cow position: | chr27:13919074-13919242 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 151, 31 |
| Conread position: | 1038-1368 |
| Cow position: | chr27:21259167-21259506 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1048-1342 |
| Cow position: | chr27:3111223-3111503 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 1048-1364 |
| Cow position: | chr27:15645868-15645560 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 1049-1265 |
| Cow position: | chr27:14998083-14998298 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 1067-1364 |
| Cow position: | chr27:8749603-8749899 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 126, 21 |
Show alignments to all cow chromosomes.