Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 694-1042 |
| Cow position: | chr3:48021330-48020972 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 60, 17 |
| Conread position: | 703-893 |
| Cow position: | chr3:37361713-37361899 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 711-908 |
| Cow position: | chr3:18466798-18466995 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 714-898 |
| Cow position: | chr3:27345869-27346051 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 5, 28 |
| Conread position: | 716-868 |
| Cow position: | chr3:4344143-4343990 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 58, 46 |
| Conread position: | 717-888 |
| Cow position: | chr3:41441099-41440930 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 720-893 |
| Cow position: | chr3:75504859-75505032 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 54, 27 |
| Conread position: | 720-922 |
| Cow position: | chr3:77193825-77193619 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 56, 20 |
| Conread position: | 720-1052 |
| Cow position: | chr3:34181969-34181633 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 159 |
| Conread position: | 721-893 |
| Cow position: | chr3:76774158-76773996 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 122 |
| Conread position: | 722-1026 |
| Cow position: | chr3:10622411-10622116 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 22 |
| Conread position: | 722-1027 |
| Cow position: | chr3:31580757-31581068 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 58 |
| Conread position: | 723-893 |
| Cow position: | chr3:1348552-1348723 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 55, 155 |
| Conread position: | 723-894 |
| Cow position: | chr3:7531279-7531447 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 104, 24 |
| Conread position: | 727-895 |
| Cow position: | chr3:21052458-21052625 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 71 |
| Conread position: | 728-892 |
| Cow position: | chr3:39917847-39918011 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 739-891 |
| Cow position: | chr3:59955360-59955207 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 35, 139 |
| Conread position: | 747-893 |
| Cow position: | chr3:41565460-41565316 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 750-888 |
| Cow position: | chr3:61995481-61995618 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 25, 35 |
| Conread position: | 750-891 |
| Cow position: | chr3:10044132-10044273 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 24, 66 |
| Conread position: | 750-892 |
| Cow position: | chr3:44404135-44404277 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 750-908 |
| Cow position: | chr3:77649811-77649646 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 750-1039 |
| Cow position: | chr3:49481581-49481871 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 195, 127 |
| Conread position: | 752-893 |
| Cow position: | chr3:41756405-41756264 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 771-973 |
| Cow position: | chr3:81860706-81860503 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 55, 106 |
| Conread position: | 774-893 |
| Cow position: | chr3:66266878-66266762 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 99 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 777-875 |
| Cow position: | chr3:44515762-44515665 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 86 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 781-1036 |
| Cow position: | chr3:20025938-20025679 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 46, 36 |
| Conread position: | 784-973 |
| Cow position: | chr3:1998912-1998729 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 804-1042 |
| Cow position: | chr3:84313901-84314144 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 82 |
| Conread position: | 810-1057 |
| Cow position: | chr3:65400446-65400689 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 815-973 |
| Cow position: | chr3:15566006-15566160 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 844-982 |
| Cow position: | chr3:17589045-17588913 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 101, 32 |
| Conread position: | 862-1017 |
| Cow position: | chr3:58193486-58193642 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 895-1070 |
| Cow position: | chr3:66266792-66266623 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 1040-1273 |
| Cow position: | chr3:23752042-23751806 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 1044-1205 |
| Cow position: | chr3:75131339-75131505 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1048-1364 |
| Cow position: | chr3:22851299-22851631 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1048-1364 |
| Cow position: | chr3:38888934-38888609 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 13, 98 |
| Conread position: | 1049-1364 |
| Cow position: | chr3:17413925-17413611 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 19, 102 |
| Conread position: | 1054-1361 |
| Cow position: | chr3:34744902-34744591 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 232 |
| Conread position: | 1056-1300 |
| Cow position: | chr3:72626711-72626957 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 14, 158 |
| Conread position: | 1056-1368 |
| Cow position: | chr3:16719128-16719441 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 135, 9 |
| Conread position: | 1067-1229 |
| Cow position: | chr3:1710752-1710918 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 86 |
| Conread position: | 1072-1364 |
| Cow position: | chr3:67535371-67535078 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 119, 72 |
| Conread position: | 1122-1364 |
| Cow position: | chr3:13447856-13448103 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 71, 59 |
| Conread position: | 1139-1364 |
| Cow position: | chr3:11543722-11543491 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 7 |
Show alignments to all cow chromosomes.