Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 681-881 |
| Cow position: | chr4:12259161-12258959 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 32, 23 |
| Conread position: | 711-859 |
| Cow position: | chr4:13374457-13374307 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 711-893 |
| Cow position: | chr4:40297853-40298036 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 711-897 |
| Cow position: | chr4:45697545-45697734 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 711-944 |
| Cow position: | chr4:38056189-38056413 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 711-975 |
| Cow position: | chr4:43087158-43086903 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 35 |
| Conread position: | 711-1042 |
| Cow position: | chr4:65909254-65908910 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 10, 40 |
| Conread position: | 713-893 |
| Cow position: | chr4:28563786-28563967 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 61, 165 |
| Conread position: | 713-893 |
| Cow position: | chr4:49364468-49364651 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 167 |
| Conread position: | 713-896 |
| Cow position: | chr4:43406847-43407031 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 713-908 |
| Cow position: | chr4:13421347-13421543 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 54, 127 |
| Conread position: | 716-893 |
| Cow position: | chr4:24827016-24827194 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 56, 132 |
| Conread position: | 716-975 |
| Cow position: | chr4:61060554-61060297 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 166 |
| Conread position: | 720-892 |
| Cow position: | chr4:12601876-12602048 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 721-861 |
| Cow position: | chr4:34501540-34501681 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 721-974 |
| Cow position: | chr4:50554209-50554456 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 722-907 |
| Cow position: | chr4:56405820-56405625 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 52, 165 |
| Conread position: | 722-1042 |
| Cow position: | chr4:51928771-51929099 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 160 |
| Conread position: | 725-1057 |
| Cow position: | chr4:7434570-7434229 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 66 |
| Conread position: | 729-892 |
| Cow position: | chr4:45687672-45687510 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 16 |
| Conread position: | 737-1018 |
| Cow position: | chr4:61476986-61477274 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 143 |
| Conread position: | 739-975 |
| Cow position: | chr4:23098238-23098002 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 35, 143 |
| Conread position: | 743-908 |
| Cow position: | chr4:12257218-12257391 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 23, 142 |
| Conread position: | 750-905 |
| Cow position: | chr4:27476330-27476174 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 752-919 |
| Cow position: | chr4:25863241-25863074 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 22, 128 |
| Conread position: | 763-1045 |
| Cow position: | chr4:48314781-48314508 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 26 |
| Conread position: | 804-1017 |
| Cow position: | chr4:53355754-53355974 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 826-1057 |
| Cow position: | chr4:12043922-12044160 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 851-1029 |
| Cow position: | chr4:47624085-47623914 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 859-1027 |
| Cow position: | chr4:13374231-13374057 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 1039-1346 |
| Cow position: | chr4:22226342-22226645 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 130, 18 |
| Conread position: | 1043-1359 |
| Cow position: | chr4:11869352-11869662 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 25, 218 |
| Conread position: | 1047-1190 |
| Cow position: | chr4:59550742-59550887 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1047-1354 |
| Cow position: | chr4:28693757-28694069 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 146, 34 |
| Conread position: | 1047-1368 |
| Cow position: | chr4:17902276-17901969 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 146, 15 |
| Conread position: | 1050-1218 |
| Cow position: | chr4:21062603-21062775 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 166 |
Show alignments to all cow chromosomes.