Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 698-1058 |
| Cow position: | chr5:1251157-1251522 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 699-1035 |
| Cow position: | chr5:23452575-23452884 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 75, 12 |
| Conread position: | 709-892 |
| Cow position: | chr5:51767488-51767675 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 8, 172 |
| Conread position: | 711-904 |
| Cow position: | chr5:58070352-58070543 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 66, 35 |
| Conread position: | 713-908 |
| Cow position: | chr5:4315546-4315738 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 115, 27 |
| Conread position: | 713-973 |
| Cow position: | chr5:37915425-37915687 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 27, 22 |
| Conread position: | 713-981 |
| Cow position: | chr5:29425344-29425074 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 202 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 13, 127 |
| Conread position: | 713-1016 |
| Cow position: | chr5:5725811-5726111 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 228 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 61, 166 |
| Conread position: | 713-1022 |
| Cow position: | chr5:54738219-54738522 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 713-1055 |
| Cow position: | chr5:26186767-26187110 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 65, 24 |
| Conread position: | 716-888 |
| Cow position: | chr5:8395385-8395215 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 58, 31 |
| Conread position: | 720-885 |
| Cow position: | chr5:62276813-62276980 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 47 |
| Conread position: | 720-908 |
| Cow position: | chr5:21573446-21573261 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 721-918 |
| Cow position: | chr5:69541061-69541256 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 105, 30 |
| Conread position: | 722-908 |
| Cow position: | chr5:27110507-27110332 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 722-919 |
| Cow position: | chr5:16174075-16173874 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 722-1026 |
| Cow position: | chr5:69068868-69069179 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 723-941 |
| Cow position: | chr5:32989740-32989948 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 723-1023 |
| Cow position: | chr5:64461112-64460818 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 723-1041 |
| Cow position: | chr5:4748444-4748131 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 725-1059 |
| Cow position: | chr5:7920793-7920452 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 15 |
| Conread position: | 740-891 |
| Cow position: | chr5:18696389-18696543 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 34, 140 |
| Conread position: | 740-893 |
| Cow position: | chr5:21529836-21529682 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 34, 135 |
| Conread position: | 744-1011 |
| Cow position: | chr5:7280233-7280510 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 30, 130 |
| Conread position: | 748-896 |
| Cow position: | chr5:30079798-30079650 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 750-963 |
| Cow position: | chr5:36047383-36047601 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 117 |
| Conread position: | 750-967 |
| Cow position: | chr5:55756005-55755798 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 750-980 |
| Cow position: | chr5:57114990-57115219 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 24, 123 |
| Conread position: | 750-1034 |
| Cow position: | chr5:16273000-16273288 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 750-1043 |
| Cow position: | chr5:40746256-40746544 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 106 |
| Conread position: | 758-1002 |
| Cow position: | chr5:33698414-33698164 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 765-978 |
| Cow position: | chr5:35457111-35457323 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 797-891 |
| Cow position: | chr5:38617737-38617831 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 797-1036 |
| Cow position: | chr5:58033372-58033616 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 148, 79 |
| Conread position: | 804-1026 |
| Cow position: | chr5:41038684-41038477 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 23, 47 |
| Conread position: | 817-1026 |
| Cow position: | chr5:63303072-63303281 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 9, 56 |
| Conread position: | 817-1043 |
| Cow position: | chr5:29066595-29066829 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 832-1043 |
| Cow position: | chr5:36854688-36854470 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 113, 45 |
| Conread position: | 846-1043 |
| Cow position: | chr5:46323482-46323281 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 34 |
| Conread position: | 854-1040 |
| Cow position: | chr5:55185116-55184937 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 860-978 |
| Cow position: | chr5:68952055-68952174 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 862-1042 |
| Cow position: | chr5:32989904-32990090 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 83, 15 |
| Conread position: | 1034-1277 |
| Cow position: | chr5:69627098-69626852 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1037-1213 |
| Cow position: | chr5:35769599-35769781 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1048-1250 |
| Cow position: | chr5:68327239-68327034 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 1049-1362 |
| Cow position: | chr5:64797986-64797673 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1051-1278 |
| Cow position: | chr5:70547769-70547995 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 142, 73 |
| Conread position: | 1051-1364 |
| Cow position: | chr5:52882292-52881985 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 102 |
| Conread position: | 1089-1368 |
| Cow position: | chr5:60517875-60518157 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 36, 170 |
| Conread position: | 1143-1368 |
| Cow position: | chr5:4350038-4350267 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 1163-1355 |
| Cow position: | chr5:37396475-37396279 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 109 |
Show alignments to all cow chromosomes.