Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 703-969 |
| Cow position: | chr6:15693727-15693461 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 71, 8 |
| Conread position: | 706-1051 |
| Cow position: | chr6:59655412-59655059 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 10 |
| Conread position: | 711-893 |
| Cow position: | chr6:32072619-32072796 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 63, 7 |
| Conread position: | 711-895 |
| Cow position: | chr6:1781851-1782035 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 63, 50 |
| Conread position: | 711-932 |
| Cow position: | chr6:60419225-60419458 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 711-996 |
| Cow position: | chr6:4494360-4494073 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 119 |
| Conread position: | 713-891 |
| Cow position: | chr6:33527800-33527622 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 66, 148 |
| Conread position: | 713-1063 |
| Cow position: | chr6:469296-468951 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 141, 37 |
| Conread position: | 720-923 |
| Cow position: | chr6:29774075-29773871 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 720-975 |
| Cow position: | chr6:30496569-30496813 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 723-870 |
| Cow position: | chr6:59452718-59452865 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 18 |
| Conread position: | 725-893 |
| Cow position: | chr6:8305526-8305359 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 49, 15 |
| Conread position: | 726-981 |
| Cow position: | chr6:63229282-63229554 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 167 |
| Conread position: | 727-1001 |
| Cow position: | chr6:13876073-13876349 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 47, 18 |
| Conread position: | 730-978 |
| Cow position: | chr6:59095584-59095823 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 735-1020 |
| Cow position: | chr6:60224160-60223889 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 39, 5 |
| Conread position: | 748-1037 |
| Cow position: | chr6:28529096-28528799 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 751-920 |
| Cow position: | chr6:9849399-9849567 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 23, 127 |
| Conread position: | 751-1045 |
| Cow position: | chr6:49629621-49629322 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 17 |
| Conread position: | 752-1050 |
| Cow position: | chr6:63080359-63080673 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 132 |
| Conread position: | 753-893 |
| Cow position: | chr6:23352957-23353095 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 20 |
| Conread position: | 753-908 |
| Cow position: | chr6:52549446-52549291 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 28, 62 |
| Conread position: | 758-1027 |
| Cow position: | chr6:25022615-25022341 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 68, 120 |
| Conread position: | 764-1026 |
| Cow position: | chr6:43598551-43598822 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 204 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 10, 116 |
| Conread position: | 765-1031 |
| Cow position: | chr6:37510565-37510824 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 181, 8 |
| Conread position: | 773-893 |
| Cow position: | chr6:19438421-19438301 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 797-969 |
| Cow position: | chr6:18416021-18415849 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 80 |
| Conread position: | 797-1030 |
| Cow position: | chr6:38854244-38854465 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 21 |
| Conread position: | 798-979 |
| Cow position: | chr6:22957569-22957750 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 804-908 |
| Cow position: | chr6:12151408-12151304 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 805-1039 |
| Cow position: | chr6:1572794-1573033 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 71 |
| Conread position: | 833-1049 |
| Cow position: | chr6:23553573-23553354 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 44 |
| Conread position: | 862-1025 |
| Cow position: | chr6:29773898-29773728 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 1041-1256 |
| Cow position: | chr6:20093100-20093324 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 1086-1359 |
| Cow position: | chr6:32445856-32446133 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 62, 36 |
| Conread position: | 1118-1359 |
| Cow position: | chr6:68627691-68627938 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 5, 67 |
Show alignments to all cow chromosomes.