Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 698-865 |
| Cow position: | chr8:15630191-15630360 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 53 |
| Conread position: | 706-852 |
| Cow position: | chr8:10429478-10429332 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 709-904 |
| Cow position: | chr8:19768988-19768794 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 711-883 |
| Cow position: | chr8:31899482-31899654 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 711-898 |
| Cow position: | chr8:13903996-13904192 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 711-908 |
| Cow position: | chr8:18958877-18959075 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 63, 164 |
| Conread position: | 711-987 |
| Cow position: | chr8:26579649-26579372 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 167 |
| Conread position: | 713-888 |
| Cow position: | chr8:6034534-6034710 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 61, 165 |
| Conread position: | 713-893 |
| Cow position: | chr8:34920666-34920839 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 713-905 |
| Cow position: | chr8:19136712-19136525 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 713-1042 |
| Cow position: | chr8:59087245-59087569 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 234 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 67, 27 |
| Conread position: | 713-1052 |
| Cow position: | chr8:56599550-56599208 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 716-1016 |
| Cow position: | chr8:44836306-44836012 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 717-923 |
| Cow position: | chr8:42535789-42535584 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 59, 119 |
| Conread position: | 720-891 |
| Cow position: | chr8:30465037-30464867 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 720-919 |
| Cow position: | chr8:5420074-5420272 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 720-1038 |
| Cow position: | chr8:22651603-22651284 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 721-874 |
| Cow position: | chr8:38008582-38008429 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 722-975 |
| Cow position: | chr8:33347722-33347974 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 97 |
| Conread position: | 723-898 |
| Cow position: | chr8:47748453-47748280 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 40 |
| Conread position: | 723-987 |
| Cow position: | chr8:50644854-50644595 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 732-980 |
| Cow position: | chr8:33998175-33998417 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 42, 82 |
| Conread position: | 740-897 |
| Cow position: | chr8:19012321-19012480 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 34, 147 |
| Conread position: | 741-884 |
| Cow position: | chr8:15510039-15509896 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 50 |
| Conread position: | 741-976 |
| Cow position: | chr8:40767608-40767373 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 87 |
| Conread position: | 741-1039 |
| Cow position: | chr8:13250227-13250531 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 6 |
| Conread position: | 742-975 |
| Cow position: | chr8:26096121-26096350 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 32, 109 |
| Conread position: | 750-984 |
| Cow position: | chr8:4894182-4893951 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 24, 75 |
| Conread position: | 762-893 |
| Cow position: | chr8:32797372-32797243 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 91 |
| Conread position: | 764-991 |
| Cow position: | chr8:1676796-1677020 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 176 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 10, 34 |
| Conread position: | 779-898 |
| Cow position: | chr8:3991874-3991755 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 98 |
| Conread position: | 784-893 |
| Cow position: | chr8:43774398-43774289 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 42, 93 |
| Conread position: | 784-975 |
| Cow position: | chr8:55887902-55887718 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 43, 93 |
| Conread position: | 787-933 |
| Cow position: | chr8:40644842-40644695 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 39, 90 |
| Conread position: | 792-893 |
| Cow position: | chr8:38195160-38195059 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 34, 85 |
| Conread position: | 797-897 |
| Cow position: | chr8:13843228-13843330 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 20, 83 |
| Conread position: | 806-1037 |
| Cow position: | chr8:47210170-47209935 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 173 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 815-924 |
| Cow position: | chr8:19014249-19014357 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 822-978 |
| Cow position: | chr8:1676402-1676247 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 124, 54 |
| Conread position: | 839-975 |
| Cow position: | chr8:3037434-3037298 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 84, 38 |
| Conread position: | 845-982 |
| Cow position: | chr8:10428859-10428722 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 53, 6 |
| Conread position: | 846-974 |
| Cow position: | chr8:36144719-36144591 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 99, 81 |
| Conread position: | 848-967 |
| Cow position: | chr8:19737004-19736888 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 97, 33 |
| Conread position: | 860-1045 |
| Cow position: | chr8:30314739-30314933 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 85, 17 |
| Conread position: | 864-1044 |
| Cow position: | chr8:19014330-19014516 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 873-1055 |
| Cow position: | chr8:31900022-31900195 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 156, 5 |
| Conread position: | 895-1045 |
| Cow position: | chr8:43774319-43774163 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 895-1069 |
| Cow position: | chr8:54833496-54833675 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 50, 41 |
| Conread position: | 1046-1368 |
| Cow position: | chr8:36967580-36967899 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 21, 110 |
| Conread position: | 1053-1258 |
| Cow position: | chr8:12081410-12081618 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 14, 128 |
| Conread position: | 1066-1364 |
| Cow position: | chr8:19109492-19109196 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 127, 26 |
| Conread position: | 1079-1364 |
| Cow position: | chr8:54519227-54518930 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1134-1364 |
| Cow position: | chr8:57178781-57179014 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 1139-1358 |
| Cow position: | chr8:47182269-47182497 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 53, 9 |
Show alignments to all cow chromosomes.