Cow genome map


           Conread name:
           Ss1.1-rtra04_n22.5
        

               Conread position:
               698-865
               

               Cow position:
               
               

               Alignm length:
               172
               

               Alignm identity:
               125
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               11, 53
               

               Conread position:
               706-852
               

               Cow position:
               
               

               Alignm length:
               149
               

               Alignm identity:
               117
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               68, 5
               

               Conread position:
               709-904
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               142
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 31
               

               Conread position:
               711-883
               

               Cow position:
               
               

               Alignm length:
               175
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               63, 29
               

               Conread position:
               711-898
               

               Cow position:
               
               

               Alignm length:
               199
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               48, 29
               

               Conread position:
               711-908
               

               Cow position:
               
               

               Alignm length:
               200
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               63, 164
               

               Conread position:
               711-987
               

               Cow position:
               
               

               Alignm length:
               280
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 167
               

               Conread position:
               713-888
               

               Cow position:
               
               

               Alignm length:
               178
               

               Alignm identity:
               138
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               61, 165
               

               Conread position:
               713-893
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               136
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               65, 81
               

               Conread position:
               713-905
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               65, 27
               

               Conread position:
               713-1042
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               234
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               67, 27
               

               Conread position:
               713-1052
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               250
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               9, 28
               

               Conread position:
               716-1016
               

               Cow position:
               
               

               Alignm length:
               306
               

               Alignm identity:
               220
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               59, 24
               

               Conread position:
               717-923
               

               Cow position:
               
               

               Alignm length:
               209
               

               Alignm identity:
               164
               

               Alignm E-value:
               8.99634e-43
               

               Alignm gaps (pig, cow):
               59, 119
               

               Conread position:
               720-891
               

               Cow position:
               
               

               Alignm length:
               177
               

               Alignm identity:
               135
               

               Alignm E-value:
               5e-27
               

               Alignm gaps (pig, cow):
               58, 42
               

               Conread position:
               720-919
               

               Cow position:
               
               

               Alignm length:
               202
               

               Alignm identity:
               140
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               54, 20
               

               Conread position:
               720-1038
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               244
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               54, 20
               

               Conread position:
               721-874
               

               Cow position:
               
               

               Alignm length:
               156
               

               Alignm identity:
               122
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               53, 19
               

               Conread position:
               722-975
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 97
               

               Conread position:
               723-898
               

               Cow position:
               
               

               Alignm length:
               179
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               51, 40
               

               Conread position:
               723-987
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               198
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               51, 27
               

               Conread position:
               732-980
               

               Cow position:
               
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               42, 82
               

               Conread position:
               740-897
               

               Cow position:
               
               

               Alignm length:
               161
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               34, 147
               

               Conread position:
               741-884
               

               Cow position:
               
               

               Alignm length:
               146
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               33, 50
               

               Conread position:
               741-976
               

               Cow position:
               
               

               Alignm length:
               240
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               34, 87
               

               Conread position:
               741-1039
               

               Cow position:
               
               

               Alignm length:
               311
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 6
               

               Conread position:
               742-975
               

               Cow position:
               
               

               Alignm length:
               237
               

               Alignm identity:
               181
               

               Alignm E-value:
               8.00001e-42
               

               Alignm gaps (pig, cow):
               32, 109
               

               Conread position:
               750-984
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               182
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               24, 75
               

               Conread position:
               762-893
               

               Cow position:
               
               

               Alignm length:
               134
               

               Alignm identity:
               110
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               12, 91
               

               Conread position:
               764-991
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-40
               

               Alignm gaps (pig, cow):
               10, 34
               

               Conread position:
               779-898
               

               Cow position:
               
               

               Alignm length:
               121
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               47, 98
               

               Conread position:
               784-893
               

               Cow position:
               
               

               Alignm length:
               111
               

               Alignm identity:
               94
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               42, 93
               

               Conread position:
               784-975
               

               Cow position:
               
               

               Alignm length:
               194
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-31
               

               Alignm gaps (pig, cow):
               43, 93
               

               Conread position:
               787-933
               

               Cow position:
               
               

               Alignm length:
               150
               

               Alignm identity:
               112
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               39, 90
               

               Conread position:
               792-893
               

               Cow position:
               
               

               Alignm length:
               103
               

               Alignm identity:
               87
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               34, 85
               

               Conread position:
               797-897
               

               Cow position:
               
               

               Alignm length:
               104
               

               Alignm identity:
               88
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               20, 83
               

               Conread position:
               806-1037
               

               Cow position:
               
               

               Alignm length:
               239
               

               Alignm identity:
               173
               

               Alignm E-value:
               9e-33
               

               Alignm gaps (pig, cow):
               13, 31
               

               Conread position:
               815-924
               

               Cow position:
               
               

               Alignm length:
               110
               

               Alignm identity:
               89
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               822-978
               

               Cow position:
               
               

               Alignm length:
               158
               

               Alignm identity:
               117
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               124, 54
               

               Conread position:
               839-975
               

               Cow position:
               
               

               Alignm length:
               139
               

               Alignm identity:
               108
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               84, 38
               

               Conread position:
               845-982
               

               Cow position:
               
               

               Alignm length:
               140
               

               Alignm identity:
               110
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               53, 6
               

               Conread position:
               846-974
               

               Cow position:
               
               

               Alignm length:
               130
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               99, 81
               

               Conread position:
               848-967
               

               Cow position:
               
               

               Alignm length:
               121
               

               Alignm identity:
               97
               

               Alignm E-value:
               8e-21
               

               Alignm gaps (pig, cow):
               97, 33
               

               Conread position:
               860-1045
               

               Cow position:
               
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               85, 17
               

               Conread position:
               864-1044
               

               Cow position:
               
               

               Alignm length:
               188
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               105, 13
               

               Conread position:
               873-1055
               

               Cow position:
               
               

               Alignm length:
               184
               

               Alignm identity:
               134
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               156, 5
               

               Conread position:
               895-1045
               

               Cow position:
               
               

               Alignm length:
               159
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               33, 40
               

               Conread position:
               895-1069
               

               Cow position:
               
               

               Alignm length:
               182
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               50, 41
               

               Conread position:
               1046-1368
               

               Cow position:
               
               

               Alignm length:
               331
               

               Alignm identity:
               223
               

               Alignm E-value:
               7e-30
               

               Alignm gaps (pig, cow):
               21, 110
               

               Conread position:
               1053-1258
               

               Cow position:
               
               

               Alignm length:
               211
               

               Alignm identity:
               145
               

               Alignm E-value:
               9e-22
               

               Alignm gaps (pig, cow):
               14, 128
               

               Conread position:
               1066-1364
               

               Cow position:
               
               

               Alignm length:
               308
               

               Alignm identity:
               210
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               127, 26
               

               Conread position:
               1079-1364
               

               Cow position:
               
               

               Alignm length:
               298
               

               Alignm identity:
               201
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               1134-1364
               

               Cow position:
               
               

               Alignm length:
               234
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               144, 0
               

               Conread position:
               1139-1358
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               53, 9
               
Show alignments to all cow chromosomes.