Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 694-861 |
| Cow position: | chr9:8516994-8516828 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 8, 134 |
| Conread position: | 696-873 |
| Cow position: | chr9:40931733-40931909 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 63 |
| Conread position: | 699-990 |
| Cow position: | chr9:52423351-52423632 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 11 |
| Conread position: | 706-1026 |
| Cow position: | chr9:34548798-34549112 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 710-933 |
| Cow position: | chr9:47147515-47147736 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 711-872 |
| Cow position: | chr9:45212064-45212224 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 116, 29 |
| Conread position: | 711-892 |
| Cow position: | chr9:32954908-32955089 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 39 |
| Conread position: | 711-897 |
| Cow position: | chr9:50725471-50725280 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 65, 36 |
| Conread position: | 711-1017 |
| Cow position: | chr9:29009578-29009279 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 63, 145 |
| Conread position: | 711-1039 |
| Cow position: | chr9:31501298-31500985 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 712-900 |
| Cow position: | chr9:32726820-32727008 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 61, 165 |
| Conread position: | 713-873 |
| Cow position: | chr9:30405863-30406026 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 713-893 |
| Cow position: | chr9:47117992-47117818 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 113, 55 |
| Conread position: | 716-891 |
| Cow position: | chr9:30135710-30135540 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 716-892 |
| Cow position: | chr9:50110806-50110971 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 716-965 |
| Cow position: | chr9:35442409-35442161 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 34, 164 |
| Conread position: | 719-891 |
| Cow position: | chr9:7081307-7081135 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 23, 137 |
| Conread position: | 721-893 |
| Cow position: | chr9:43533026-43532855 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 721-974 |
| Cow position: | chr9:28891427-28891680 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 722-893 |
| Cow position: | chr9:5742118-5741947 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 723-893 |
| Cow position: | chr9:39791279-39791447 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 723-908 |
| Cow position: | chr9:3387084-3386895 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 21, 158 |
| Conread position: | 724-1054 |
| Cow position: | chr9:31525103-31524763 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 16 |
| Conread position: | 725-982 |
| Cow position: | chr9:30333300-30333043 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 193 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 43, 75 |
| Conread position: | 727-973 |
| Cow position: | chr9:43859599-43859836 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 174 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 727-1049 |
| Cow position: | chr9:19598016-19598354 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 11 |
| Conread position: | 728-891 |
| Cow position: | chr9:5579723-5579562 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 50, 12 |
| Conread position: | 728-978 |
| Cow position: | chr9:41287979-41287729 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 46, 12 |
| Conread position: | 740-984 |
| Cow position: | chr9:21925366-21925607 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 740-1039 |
| Cow position: | chr9:10790755-10790460 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 750-893 |
| Cow position: | chr9:30210376-30210233 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 24, 128 |
| Conread position: | 750-975 |
| Cow position: | chr9:93141-93371 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 24, 48 |
| Conread position: | 750-981 |
| Cow position: | chr9:15236362-15236131 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 750-1019 |
| Cow position: | chr9:27453466-27453196 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 754-888 |
| Cow position: | chr9:33755677-33755812 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 24, 119 |
| Conread position: | 762-988 |
| Cow position: | chr9:15543886-15544114 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 12, 88 |
| Conread position: | 768-1057 |
| Cow position: | chr9:23989238-23989528 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 6, 102 |
| Conread position: | 780-1027 |
| Cow position: | chr9:23937453-23937706 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 46, 97 |
| Conread position: | 806-1026 |
| Cow position: | chr9:10787621-10787410 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 71 |
| Conread position: | 808-990 |
| Cow position: | chr9:45427722-45427541 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 18, 69 |
| Conread position: | 827-1042 |
| Cow position: | chr9:11911412-11911197 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 842-1051 |
| Cow position: | chr9:50640197-50639978 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 102, 35 |
| Conread position: | 851-1043 |
| Cow position: | chr9:60777926-60778129 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 82, 27 |
| Conread position: | 856-1039 |
| Cow position: | chr9:42973073-42972888 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 101, 21 |
| Conread position: | 864-1088 |
| Cow position: | chr9:10733638-10733875 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 66 |
| Conread position: | 876-1044 |
| Cow position: | chr9:17803490-17803665 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 1048-1365 |
| Cow position: | chr9:50273331-50273655 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 1119-1356 |
| Cow position: | chr9:51761507-51761275 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 156 |
| Conread position: | 1124-1364 |
| Cow position: | chr9:41927766-41927530 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 69, 55 |
Show alignments to all cow chromosomes.