Cow genome map
| Conread name: | Ss1.1-rtra04_n22.5 |
| Conread position: | 702-867 |
| Cow position: | chrX:31732526-31732362 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 39 |
| Conread position: | 706-875 |
| Cow position: | chrX:15118629-15118790 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 68, 34 |
| Conread position: | 706-893 |
| Cow position: | chrX:40111323-40111510 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 68, 5 |
| Conread position: | 707-891 |
| Cow position: | chrX:3359120-3358927 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 67, 77 |
| Conread position: | 711-894 |
| Cow position: | chrX:23908186-23908005 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 711-915 |
| Cow position: | chrX:20948551-20948348 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 115, 29 |
| Conread position: | 711-915 |
| Cow position: | chrX:27958200-27957996 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 712-898 |
| Cow position: | chrX:7087710-7087519 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 31, 172 |
| Conread position: | 713-1030 |
| Cow position: | chrX:42552370-42552679 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 61, 77 |
| Conread position: | 713-1042 |
| Cow position: | chrX:16953361-16953680 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 143 |
| Conread position: | 713-1043 |
| Cow position: | chrX:3796781-3796434 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 713-1046 |
| Cow position: | chrX:33787575-33787244 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 22 |
| Conread position: | 716-1030 |
| Cow position: | chrX:1076124-1075787 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 128 |
| Conread position: | 719-893 |
| Cow position: | chrX:30848103-30848277 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 720-873 |
| Cow position: | chrX:19066905-19066751 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 93 |
| Conread position: | 720-893 |
| Cow position: | chrX:4835653-4835481 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 54, 20 |
| Conread position: | 721-893 |
| Cow position: | chrX:23118699-23118528 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 57, 73 |
| Conread position: | 722-892 |
| Cow position: | chrX:38533513-38533343 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 43 |
| Conread position: | 722-894 |
| Cow position: | chrX:15277343-15277529 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 169 |
| Conread position: | 722-896 |
| Cow position: | chrX:2375038-2374873 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 52, 18 |
| Conread position: | 723-1043 |
| Cow position: | chrX:30728513-30728187 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 156 |
| Conread position: | 724-908 |
| Cow position: | chrX:25043918-25044100 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 125 |
| Conread position: | 726-896 |
| Cow position: | chrX:6029205-6029372 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 728-976 |
| Cow position: | chrX:12716856-12717103 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 739-893 |
| Cow position: | chrX:316045-316201 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 35, 140 |
| Conread position: | 739-893 |
| Cow position: | chrX:398217-398371 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 742-975 |
| Cow position: | chrX:22273663-22273882 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 765-990 |
| Cow position: | chrX:1091134-1091361 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 180 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 13, 53 |
| Conread position: | 774-893 |
| Cow position: | chrX:8502679-8502560 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 51, 103 |
| Conread position: | 785-1038 |
| Cow position: | chrX:32778867-32778604 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 811-1027 |
| Cow position: | chrX:35056761-35056971 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 814-1021 |
| Cow position: | chrX:33637721-33637518 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 132, 62 |
| Conread position: | 822-1031 |
| Cow position: | chrX:1790391-1790192 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 123, 14 |
| Conread position: | 895-1054 |
| Cow position: | chrX:8502590-8502428 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 33 |
| Conread position: | 1039-1364 |
| Cow position: | chrX:19169689-19170011 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 31, 7 |
| Conread position: | 1039-1365 |
| Cow position: | chrX:7390099-7390434 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 109 |
| Conread position: | 1042-1364 |
| Cow position: | chrX:11114324-11114648 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 149 |
| Conread position: | 1043-1364 |
| Cow position: | chrX:23381957-23382279 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 24, 58 |
| Conread position: | 1043-1364 |
| Cow position: | chrX:35820081-35820401 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 238 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 25, 111 |
| Conread position: | 1048-1197 |
| Cow position: | chrX:17900967-17901118 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 19, 101 |
| Conread position: | 1048-1262 |
| Cow position: | chrX:35637995-35637777 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 19, 109 |
| Conread position: | 1048-1362 |
| Cow position: | chrX:19603764-19604088 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 1051-1364 |
| Cow position: | chrX:6820047-6820357 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 103 |
| Conread position: | 1059-1228 |
| Cow position: | chrX:6676061-6675888 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1065-1190 |
| Cow position: | chrX:25462760-25462633 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1085-1351 |
| Cow position: | chrX:1431807-1431533 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 78, 256 |
| Conread position: | 1122-1364 |
| Cow position: | chrX:3628915-3628666 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 184 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 70, 117 |
| Conread position: | 1128-1364 |
| Cow position: | chrX:11005788-11005545 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 62, 111 |
| Conread position: | 1148-1364 |
| Cow position: | chrX:37942642-37942864 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 45, 95 |
Show alignments to all cow chromosomes.