Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-367 |
| Cow position: | chr13:22125557-22125922 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 216, 198 |
| Conread position: | 2-367 |
| Cow position: | chr13:24163283-24163648 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 216, 198 |
| Conread position: | 2-385 |
| Cow position: | chr13:56292158-56291772 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 2-556 |
| Cow position: | chr13:56333504-56334058 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 337 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 89, 82 |
| Conread position: | 2-619 |
| Cow position: | chr13:24162695-24163312 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 261, 266 |
| Conread position: | 3-540 |
| Cow position: | chr13:56317304-56317833 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 34, 53 |
| Conread position: | 4-621 |
| Cow position: | chr13:56292403-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 37 |
| Conread position: | 6-511 |
| Cow position: | chr13:24163119-24163624 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 462, 453 |
| Conread position: | 8-520 |
| Cow position: | chr13:22125143-22125655 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 9-436 |
| Cow position: | chr13:39984451-39984878 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 331 |
| Conread position: | 9-707 |
| Cow position: | chr13:56333679-56334386 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 20-625 |
| Cow position: | chr13:39983874-39984479 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 16 |
| Conread position: | 23-293 |
| Cow position: | chr13:39984633-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 162, 152 |
| Conread position: | 23-618 |
| Cow position: | chr13:22124822-22125417 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 353 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 275, 268 |
| Conread position: | 23-618 |
| Cow position: | chr13:24162548-24163143 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 275, 268 |
| Conread position: | 23-626 |
| Cow position: | chr13:39984297-39984900 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 498, 479 |
| Conread position: | 23-649 |
| Cow position: | chr13:56292468-56291848 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 271 |
| Conread position: | 23-701 |
| Cow position: | chr13:39984129-39984811 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 145 |
| Conread position: | 29-502 |
| Cow position: | chr13:24162888-24163363 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 14, 69 |
| Conread position: | 31-626 |
| Cow position: | chr13:56292712-56292122 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 371 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 135, 199 |
| Conread position: | 34-649 |
| Cow position: | chr13:39983972-39984585 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 219 |
| Conread position: | 35-644 |
| Cow position: | chr13:39984225-39984833 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 35-649 |
| Cow position: | chr13:39984057-39984669 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 138 |
| Conread position: | 36-619 |
| Cow position: | chr13:22125339-22125922 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 351 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 208, 214 |
| Conread position: | 53-622 |
| Cow position: | chr13:56292853-56292283 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 355 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 281, 78 |
| Conread position: | 71-628 |
| Cow position: | chr13:39983841-39984398 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 346 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 93, 86 |
| Conread position: | 81-605 |
| Cow position: | chr13:24162438-24162962 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 316 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 104, 98 |
| Conread position: | 107-503 |
| Cow position: | chr13:56317929-56318331 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 245 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 65, 74 |
| Conread position: | 108-626 |
| Cow position: | chr13:56333526-56334044 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 140-619 |
| Cow position: | chr13:22124687-22125166 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 283 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 408, 403 |
| Conread position: | 140-619 |
| Cow position: | chr13:24162413-24162892 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 128, 122 |
| Conread position: | 141-654 |
| Cow position: | chr13:56292849-56292339 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 94, 74 |
| Conread position: | 183-634 |
| Cow position: | chr13:39930617-39931067 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 151 |
| Conread position: | 260-634 |
| Cow position: | chr13:39930610-39930983 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 67, 74 |
| Conread position: | 262-593 |
| Cow position: | chr13:56333512-56333843 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 84, 77 |
| Conread position: | 272-649 |
| Cow position: | chr13:39983874-39984249 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 332, 320 |
| Conread position: | 275-627 |
| Cow position: | chr13:56317929-56318287 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 294-673 |
| Cow position: | chr13:39983812-39984193 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 363, 333 |
| Conread position: | 308-705 |
| Cow position: | chr13:56292850-56292456 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 80 |
Show alignments to all cow chromosomes.