Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 1-457
Cow position:
Alignm length: 459
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 252

Conread position: 1-625
Cow position:
Alignm length: 629
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 261

Conread position: 2-341
Cow position:
Alignm length: 340
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 2-423
Cow position:
Alignm length: 426
Alignm identity: 275
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 156, 148

Conread position: 2-507
Cow position:
Alignm length: 507
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 261

Conread position: 2-588
Cow position:
Alignm length: 590
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 2-591
Cow position:
Alignm length: 590
Alignm identity: 346
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 2-606
Cow position:
Alignm length: 605
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-619
Cow position:
Alignm length: 620
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 156

Conread position: 2-625
Cow position:
Alignm length: 628
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 117

Conread position: 2-625
Cow position:
Alignm length: 629
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 443

Conread position: 2-625
Cow position:
Alignm length: 627
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 146

Conread position: 3-458
Cow position:
Alignm length: 458
Alignm identity: 272
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 12, 16

Conread position: 3-466
Cow position:
Alignm length: 465
Alignm identity: 284
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 182, 173

Conread position: 3-593
Cow position:
Alignm length: 593
Alignm identity: 358
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 168, 176

Conread position: 3-601
Cow position:
Alignm length: 601
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 190

Conread position: 3-626
Cow position:
Alignm length: 628
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 3-638
Cow position:
Alignm length: 643
Alignm identity: 380
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 82, 91

Conread position: 3-644
Cow position:
Alignm length: 646
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 103

Conread position: 3-644
Cow position:
Alignm length: 645
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 103

Conread position: 5-638
Cow position:
Alignm length: 634
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-590
Cow position:
Alignm length: 588
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 26

Conread position: 9-382
Cow position:
Alignm length: 374
Alignm identity: 236
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 9-460
Cow position:
Alignm length: 454
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 75

Conread position: 9-560
Cow position:
Alignm length: 554
Alignm identity: 337
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 258, 262

Conread position: 9-587
Cow position:
Alignm length: 582
Alignm identity: 348
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 413, 425

Conread position: 9-588
Cow position:
Alignm length: 582
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 149

Conread position: 9-595
Cow position:
Alignm length: 590
Alignm identity: 348
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 254, 84

Conread position: 9-619
Cow position:
Alignm length: 611
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-638
Cow position:
Alignm length: 632
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 496, 510

Conread position: 9-643
Cow position:
Alignm length: 639
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 184

Conread position: 9-689
Cow position:
Alignm length: 686
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 497

Conread position: 9-702
Cow position:
Alignm length: 698
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 75

Conread position: 10-550
Cow position:
Alignm length: 541
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-560
Cow position:
Alignm length: 552
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 148

Conread position: 11-587
Cow position:
Alignm length: 581
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 224

Conread position: 11-701
Cow position:
Alignm length: 698
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 158

Conread position: 12-335
Cow position:
Alignm length: 325
Alignm identity: 216
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 246, 252

Conread position: 12-638
Cow position:
Alignm length: 628
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 586, 580

Conread position: 12-638
Cow position:
Alignm length: 627
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 12-638
Cow position:
Alignm length: 628
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 578, 588

Conread position: 12-752
Cow position:
Alignm length: 744
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 628, 0

Conread position: 15-418
Cow position:
Alignm length: 405
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 333

Conread position: 15-472
Cow position:
Alignm length: 461
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 430

Conread position: 15-491
Cow position:
Alignm length: 480
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 83

Conread position: 15-537
Cow position:
Alignm length: 525
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 214

Conread position: 15-545
Cow position:
Alignm length: 532
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 20

Conread position: 15-625
Cow position:
Alignm length: 613
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 406

Conread position: 15-627
Cow position:
Alignm length: 615
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 489, 504

Conread position: 15-638
Cow position:
Alignm length: 624
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-627
Cow position:
Alignm length: 611
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 583, 574

Conread position: 19-559
Cow position:
Alignm length: 543
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 69

Conread position: 19-691
Cow position:
Alignm length: 680
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 69

Conread position: 20-644
Cow position:
Alignm length: 627
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 256

Conread position: 21-328
Cow position:
Alignm length: 311
Alignm identity: 203
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 86, 70

Conread position: 21-604
Cow position:
Alignm length: 587
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 88

Conread position: 21-625
Cow position:
Alignm length: 607
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 252

Conread position: 21-644
Cow position:
Alignm length: 625
Alignm identity: 370
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 424, 403

Conread position: 21-688
Cow position:
Alignm length: 672
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 434, 426

Conread position: 23-463
Cow position:
Alignm length: 445
Alignm identity: 266
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 335, 328

Conread position: 23-625
Cow position:
Alignm length: 606
Alignm identity: 356
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 138, 91

Conread position: 23-626
Cow position:
Alignm length: 607
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 29

Conread position: 23-638
Cow position:
Alignm length: 617
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 398, 410

Conread position: 23-668
Cow position:
Alignm length: 650
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 526, 571

Conread position: 24-378
Cow position:
Alignm length: 357
Alignm identity: 225
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 33, 37

Conread position: 24-466
Cow position:
Alignm length: 444
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 222

Conread position: 24-500
Cow position:
Alignm length: 478
Alignm identity: 296
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 160, 151

Conread position: 24-587
Cow position:
Alignm length: 564
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-588
Cow position:
Alignm length: 574
Alignm identity: 349
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 13, 8

Conread position: 24-594
Cow position:
Alignm length: 576
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 46

Conread position: 24-625
Cow position:
Alignm length: 602
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-625
Cow position:
Alignm length: 603
Alignm identity: 359
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 161, 167

Conread position: 24-626
Cow position:
Alignm length: 604
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 165

Conread position: 24-628
Cow position:
Alignm length: 608
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 134

Conread position: 24-628
Cow position:
Alignm length: 607
Alignm identity: 370
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 236, 197

Conread position: 24-638
Cow position:
Alignm length: 616
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 134

Conread position: 24-638
Cow position:
Alignm length: 616
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 85

Conread position: 24-638
Cow position:
Alignm length: 620
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 74

Conread position: 24-644
Cow position:
Alignm length: 622
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 155

Conread position: 24-644
Cow position:
Alignm length: 623
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 82

Conread position: 24-645
Cow position:
Alignm length: 624
Alignm identity: 372
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 78, 85

Conread position: 24-671
Cow position:
Alignm length: 652
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 63

Conread position: 24-687
Cow position:
Alignm length: 668
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 85

Conread position: 25-621
Cow position:
Alignm length: 598
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 20

Conread position: 30-223
Cow position:
Alignm length: 194
Alignm identity: 130
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 35-644
Cow position:
Alignm length: 610
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 592, 0

Conread position: 35-644
Cow position:
Alignm length: 614
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 74

Conread position: 35-649
Cow position:
Alignm length: 615
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 593, 0

Conread position: 36-548
Cow position:
Alignm length: 517
Alignm identity: 309
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 157, 136

Conread position: 36-550
Cow position:
Alignm length: 516
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 401

Conread position: 36-562
Cow position:
Alignm length: 531
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 36-587
Cow position:
Alignm length: 553
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 409, 389

Conread position: 36-598
Cow position:
Alignm length: 568
Alignm identity: 337
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 386, 405

Conread position: 36-616
Cow position:
Alignm length: 583
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 72

Conread position: 36-619
Cow position:
Alignm length: 584
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 36-619
Cow position:
Alignm length: 584
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 36-631
Cow position:
Alignm length: 599
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 122

Conread position: 39-618
Cow position:
Alignm length: 584
Alignm identity: 345
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 25, 31

Conread position: 40-469
Cow position:
Alignm length: 431
Alignm identity: 272
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 228, 224

Conread position: 41-588
Cow position:
Alignm length: 552
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 55

Conread position: 41-621
Cow position:
Alignm length: 583
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 481, 109

Conread position: 41-644
Cow position:
Alignm length: 604
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 42-588
Cow position:
Alignm length: 550
Alignm identity: 320
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 52, 42

Conread position: 52-644
Cow position:
Alignm length: 594
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 123

Conread position: 54-625
Cow position:
Alignm length: 576
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 370

Conread position: 69-686
Cow position:
Alignm length: 625
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 89

Conread position: 108-588
Cow position:
Alignm length: 487
Alignm identity: 305
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 76, 66

Conread position: 108-598
Cow position:
Alignm length: 494
Alignm identity: 305
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 160, 61

Conread position: 108-656
Cow position:
Alignm length: 552
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 49

Conread position: 113-625
Cow position:
Alignm length: 513
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 114-386
Cow position:
Alignm length: 275
Alignm identity: 176
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 52, 44

Conread position: 114-625
Cow position:
Alignm length: 513
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 350

Conread position: 126-546
Cow position:
Alignm length: 422
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 319

Conread position: 144-670
Cow position:
Alignm length: 531
Alignm identity: 317
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 499, 483

Conread position: 151-418
Cow position:
Alignm length: 269
Alignm identity: 171
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 24

Conread position: 183-672
Cow position:
Alignm length: 493
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 155

Conread position: 192-625
Cow position:
Alignm length: 435
Alignm identity: 270
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 243, 253

Conread position: 202-396
Cow position:
Alignm length: 195
Alignm identity: 138
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 202-644
Cow position:
Alignm length: 443
Alignm identity: 278
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 44, 0

Conread position: 208-625
Cow position:
Alignm length: 418
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 267-649
Cow position:
Alignm length: 383
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 0

Conread position: 275-619
Cow position:
Alignm length: 346
Alignm identity: 226
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 155, 145

Conread position: 298-619
Cow position:
Alignm length: 323
Alignm identity: 211
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 61, 23

Conread position: 350-702
Cow position:
Alignm length: 355
Alignm identity: 226
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 293, 0

Conread position: 368-625
Cow position:
Alignm length: 258
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 369-630
Cow position:
Alignm length: 264
Alignm identity: 171
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 73, 51

Show alignments to all cow chromosomes.