Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 1-491 |
| Cow position: | chr17:22551970-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-627 |
| Cow position: | chr17:22552390-22551764 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 18 |
| Conread position: | 1-644 |
| Cow position: | chr17:22552810-22552168 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 627, 0 |
| Conread position: | 1-700 |
| Cow position: | chr17:22552894-22552193 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 627 |
| Conread position: | 1-708 |
| Cow position: | chr17:22552978-22552269 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 644, 626 |
| Conread position: | 2-415 |
| Cow position: | chr17:22452086-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 87 |
| Conread position: | 2-627 |
| Cow position: | chr17:22499268-22498643 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 508, 498 |
| Conread position: | 3-158 |
| Cow position: | chr17:22551632-22551477 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-418 |
| Cow position: | chr17:22473545-22473962 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 83 |
| Conread position: | 3-552 |
| Cow position: | chr17:22452169-22451620 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 75 |
| Conread position: | 3-645 |
| Cow position: | chr17:22552136-22551495 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 625, 0 |
| Conread position: | 4-627 |
| Cow position: | chr17:22553059-22552436 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 52 |
| Conread position: | 4-644 |
| Cow position: | chr17:22552555-22551916 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 624, 0 |
| Conread position: | 4-649 |
| Cow position: | chr17:22590308-22589666 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 4-671 |
| Cow position: | chr17:22552471-22551802 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 99 |
| Conread position: | 4-704 |
| Cow position: | chr17:22553143-22552440 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 154 |
| Conread position: | 5-619 |
| Cow position: | chr17:22552302-22551688 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-639 |
| Cow position: | chr17:22589972-22589339 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 582, 590 |
| Conread position: | 5-644 |
| Cow position: | chr17:22552638-22552000 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 266 |
| Conread position: | 5-734 |
| Cow position: | chr17:22589888-22589157 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 82 |
| Conread position: | 6-613 |
| Cow position: | chr17:22590139-22589532 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 589, 584 |
| Conread position: | 6-626 |
| Cow position: | chr17:22590223-22589603 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-704 |
| Cow position: | chr17:22552721-22552020 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 439 |
| Conread position: | 8-625 |
| Cow position: | chr17:22590053-22589436 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 419, 412 |
| Conread position: | 9-419 |
| Cow position: | chr17:41440653-41440243 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 152, 139 |
| Conread position: | 9-627 |
| Cow position: | chr17:22452331-22451713 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 66 |
| Conread position: | 9-645 |
| Cow position: | chr17:22499093-22498467 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 79 |
| Conread position: | 12-626 |
| Cow position: | chr17:22452412-22451798 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 146 |
| Conread position: | 14-644 |
| Cow position: | chr17:22452242-22451613 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 144 |
| Conread position: | 15-399 |
| Cow position: | chr17:22498835-22498460 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 93 |
| Conread position: | 15-621 |
| Cow position: | chr17:22499171-22498565 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 420 |
| Conread position: | 15-625 |
| Cow position: | chr17:22473306-22473916 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 237 |
| Conread position: | 15-669 |
| Cow position: | chr17:22552208-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 630, 613 |
| Conread position: | 22-708 |
| Cow position: | chr17:22499332-22498644 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 324, 317 |
| Conread position: | 23-558 |
| Cow position: | chr17:22473398-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 526, 0 |
| Conread position: | 34-701 |
| Cow position: | chr17:22473244-22473912 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 311, 19 |
| Conread position: | 41-626 |
| Cow position: | chr17:22499395-22498812 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 9 |
| Conread position: | 65-644 |
| Cow position: | chr17:22553166-22552588 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 92 |
| Conread position: | 69-419 |
| Cow position: | chr17:41440677-41440327 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 95-644 |
| Cow position: | chr17:22452413-22451865 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 319 |
| Conread position: | 129-700 |
| Cow position: | chr17:22499393-22498820 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 514, 0 |
| Conread position: | 208-618 |
| Cow position: | chr17:22499398-22498988 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 382 |
| Conread position: | 292-625 |
| Cow position: | chr17:22499398-22499065 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 309-649 |
| Cow position: | chr17:22553174-22552836 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 319, 0 |
Show alignments to all cow chromosomes.