Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-342 |
| Cow position: | chr19:14948339-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 93, 85 |
| Conread position: | 2-384 |
| Cow position: | chr19:23614736-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 2-448 |
| Cow position: | chr19:14940620-14941066 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-469 |
| Cow position: | chr19:20635505-20635038 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 106 |
| Conread position: | 2-625 |
| Cow position: | chr19:23649766-23650389 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 2-627 |
| Cow position: | chr19:14940032-14940657 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-627 |
| Cow position: | chr19:23649682-23650307 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 266 |
| Conread position: | 2-638 |
| Cow position: | chr19:14959525-14958904 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 0 |
| Conread position: | 2-688 |
| Cow position: | chr19:23613476-23614164 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 98 |
| Conread position: | 3-299 |
| Cow position: | chr19:14959119-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-311 |
| Cow position: | chr19:23597410-23597718 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-554 |
| Cow position: | chr19:14940537-14941088 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-620 |
| Cow position: | chr19:14960430-14959815 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 3-627 |
| Cow position: | chr19:14940201-14940825 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 155 |
| Conread position: | 3-701 |
| Cow position: | chr19:14940285-14940987 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 171 |
| Conread position: | 5-377 |
| Cow position: | chr19:43570010-43569641 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 277 |
| Conread position: | 5-588 |
| Cow position: | chr19:14960345-14959765 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 195 |
| Conread position: | 5-700 |
| Cow position: | chr19:14959607-14958924 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 256 |
| Conread position: | 6-417 |
| Cow position: | chr19:14948418-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 15 |
| Conread position: | 6-631 |
| Cow position: | chr19:23614488-23615113 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 338, 333 |
| Conread position: | 6-644 |
| Cow position: | chr19:23613732-23614369 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 258 |
| Conread position: | 6-690 |
| Cow position: | chr19:23614320-23615005 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 337, 321 |
| Conread position: | 8-649 |
| Cow position: | chr19:23613398-23614037 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 505, 490 |
| Conread position: | 9-418 |
| Cow position: | chr19:20678338-20678744 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 384, 0 |
| Conread position: | 9-625 |
| Cow position: | chr19:14940375-14940991 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-649 |
| Cow position: | chr19:20677834-20678472 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 618, 0 |
| Conread position: | 9-670 |
| Cow position: | chr19:14960006-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 194 |
| Conread position: | 9-708 |
| Cow position: | chr19:23596915-23597613 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 117 |
| Conread position: | 12-625 |
| Cow position: | chr19:23649608-23650221 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 89 |
| Conread position: | 12-643 |
| Cow position: | chr19:23649524-23650154 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 13-625 |
| Cow position: | chr19:20677922-20678534 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 86 |
| Conread position: | 14-382 |
| Cow position: | chr19:23597337-23597705 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 327 |
| Conread position: | 15-229 |
| Cow position: | chr19:20635240-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-498 |
| Cow position: | chr19:23597254-23597736 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 143 |
| Conread position: | 15-586 |
| Cow position: | chr19:20678092-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 15-619 |
| Cow position: | chr19:14940465-14941069 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-639 |
| Cow position: | chr19:23649863-23650487 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 81 |
| Conread position: | 15-644 |
| Cow position: | chr19:23614245-23614873 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 583, 575 |
| Conread position: | 15-644 |
| Cow position: | chr19:23649443-23650071 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 613, 0 |
| Conread position: | 15-670 |
| Cow position: | chr19:23613573-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 312 |
| Conread position: | 15-691 |
| Cow position: | chr19:23613993-23614671 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 472 |
| Conread position: | 18-544 |
| Cow position: | chr19:43570164-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 19-627 |
| Cow position: | chr19:14959677-14959083 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 21-625 |
| Cow position: | chr19:23597092-23597696 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 23-418 |
| Cow position: | chr19:14916028-14916418 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 272, 109 |
| Conread position: | 23-627 |
| Cow position: | chr19:23614085-23614689 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 380 |
| Conread position: | 23-644 |
| Cow position: | chr19:23597013-23597630 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 23-649 |
| Cow position: | chr19:20677680-20678304 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 77 |
| Conread position: | 23-670 |
| Cow position: | chr19:20677764-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 572, 567 |
| Conread position: | 23-688 |
| Cow position: | chr19:23614421-23615088 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 24-644 |
| Cow position: | chr19:23613666-23614285 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 315 |
| Conread position: | 24-644 |
| Cow position: | chr19:23613918-23614537 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 603, 0 |
| Conread position: | 24-648 |
| Cow position: | chr19:43570242-43569625 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 134 |
| Conread position: | 24-712 |
| Cow position: | chr19:14959419-14958755 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 62 |
| Conread position: | 27-649 |
| Cow position: | chr19:14939973-14940593 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 600, 0 |
| Conread position: | 30-503 |
| Cow position: | chr19:20678191-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-560 |
| Cow position: | chr19:20678275-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 55 |
| Conread position: | 30-625 |
| Cow position: | chr19:14940144-14940739 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 222 |
| Conread position: | 30-671 |
| Cow position: | chr19:20635645-20635002 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 393 |
| Conread position: | 34-588 |
| Cow position: | chr19:20677439-20677993 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 22 |
| Conread position: | 34-672 |
| Cow position: | chr19:20677523-20678163 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 490, 482 |
| Conread position: | 35-588 |
| Cow position: | chr19:20677608-20678161 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 395 |
| Conread position: | 36-588 |
| Cow position: | chr19:20678029-20678581 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 144 |
| Conread position: | 42-625 |
| Cow position: | chr19:23649302-23649885 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 134 |
| Conread position: | 44-625 |
| Cow position: | chr19:23649388-23649969 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 43 |
| Conread position: | 55-625 |
| Cow position: | chr19:43570452-43569893 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 55 |
| Conread position: | 66-704 |
| Cow position: | chr19:14960451-14959813 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 193 |
| Conread position: | 99-690 |
| Cow position: | chr19:23613321-23613914 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 310 |
| Conread position: | 106-700 |
| Cow position: | chr19:23649282-23649878 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 52 |
| Conread position: | 107-616 |
| Cow position: | chr19:14915863-14916365 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 311 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 151, 39 |
| Conread position: | 108-594 |
| Cow position: | chr19:14948484-14947999 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 81 |
| Conread position: | 126-672 |
| Cow position: | chr19:14960475-14959929 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 517, 322 |
| Conread position: | 130-644 |
| Cow position: | chr19:23596868-23597378 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 317 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 164, 0 |
| Conread position: | 200-631 |
| Cow position: | chr19:14948476-14948046 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 73 |
| Conread position: | 200-672 |
| Cow position: | chr19:43570392-43569928 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 114 |
| Conread position: | 203-649 |
| Cow position: | chr19:20677440-20677884 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 137 |
| Conread position: | 261-774 |
| Cow position: | chr19:23613315-23613830 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 366 |
| Conread position: | 270-596 |
| Cow position: | chr19:23596840-23597162 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 281-599 |
| Cow position: | chr19:20635646-20635328 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-701 |
| Cow position: | chr19:14960477-14960150 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 253, 0 |
Show alignments to all cow chromosomes.