Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 1-436
Cow position: chr22:12418902-12418467 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 425

Conread position: 1-502
Cow position: chr22:12418986-12418485 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-644
Cow position: chr22:12476096-12475454 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 259

Conread position: 1-704
Cow position: chr22:12431951-12431244 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 32

Conread position: 2-625
Cow position: chr22:12385710-12385085 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 40

Conread position: 2-644
Cow position: chr22:12419254-12418596 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 576

Conread position: 2-704
Cow position: chr22:12476179-12475474 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 638, 0

Conread position: 2-704
Cow position: chr22:12499080-12499785 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 633, 0

Conread position: 3-306
Cow position: chr22:12475590-12475287 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 209
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 3-306
Cow position: chr22:12499669-12499972 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 3-469
Cow position: chr22:12475758-12475292 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 261

Conread position: 3-469
Cow position: chr22:12499501-12499967 (view UCSC Genome Browser custom track)
Alignm length: 468
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 439, 430

Conread position: 3-551
Cow position: chr22:12385456-12384907 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 7

Conread position: 3-628
Cow position: chr22:12432117-12431492 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 30

Conread position: 3-631
Cow position: chr22:11640817-11641445 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 515

Conread position: 3-644
Cow position: chr22:12476262-12475622 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 258

Conread position: 3-645
Cow position: chr22:12399549-12398906 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 640, 0

Conread position: 3-691
Cow position: chr22:12498997-12499687 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 169

Conread position: 6-554
Cow position: chr22:11701147-11701696 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 31

Conread position: 6-562
Cow position: chr22:11640904-11641460 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 84

Conread position: 6-628
Cow position: chr22:12458394-12457772 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 253

Conread position: 6-644
Cow position: chr22:12431358-12430721 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 428

Conread position: 6-644
Cow position: chr22:12431778-12431141 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 173

Conread position: 6-671
Cow position: chr22:12458563-12457895 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 426

Conread position: 7-334
Cow position: chr22:11666577-11666905 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 213
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 12, 264

Conread position: 7-626
Cow position: chr22:12385537-12384916 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 88

Conread position: 9-470
Cow position: chr22:12458223-12457762 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 170

Conread position: 9-550
Cow position: chr22:12431103-12430562 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 237, 250

Conread position: 9-589
Cow position: chr22:14429695-14430275 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 75

Conread position: 9-625
Cow position: chr22:12432447-12431831 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 594, 584

Conread position: 9-627
Cow position: chr22:12399627-12399009 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 511

Conread position: 9-627
Cow position: chr22:12476340-12475722 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 149

Conread position: 9-627
Cow position: chr22:12498919-12499537 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 149

Conread position: 15-299
Cow position: chr22:12418720-12418434 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 186
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 79, 72

Conread position: 15-398
Cow position: chr22:12399117-12398733 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 0

Conread position: 15-550
Cow position: chr22:12458301-12457766 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-550
Cow position: chr22:12475830-12475295 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-551
Cow position: chr22:12399285-12398749 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 406

Conread position: 15-621
Cow position: chr22:46654152-46654758 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 73

Conread position: 15-625
Cow position: chr22:12431601-12430991 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-625
Cow position: chr22:12499345-12499955 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 244

Conread position: 15-626
Cow position: chr22:12431181-12430570 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 237

Conread position: 15-627
Cow position: chr22:12475914-12475302 (view UCSC Genome Browser custom track)
Alignm length: 614
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 245

Conread position: 15-639
Cow position: chr22:12431265-12430642 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 318, 335

Conread position: 15-644
Cow position: chr22:12431517-12430889 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 228

Conread position: 15-657
Cow position: chr22:12432189-12431548 (view UCSC Genome Browser custom track)
Alignm length: 646
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 164

Conread position: 15-700
Cow position: chr22:12399789-12399102 (view UCSC Genome Browser custom track)
Alignm length: 690
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 79

Conread position: 19-621
Cow position: chr22:12458465-12457863 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 416

Conread position: 19-627
Cow position: chr22:12419321-12418696 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 0

Conread position: 21-626
Cow position: chr22:12458631-12458026 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 69

Conread position: 22-638
Cow position: chr22:12431846-12431230 (view UCSC Genome Browser custom track)
Alignm length: 619
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 241

Conread position: 23-550
Cow position: chr22:12499437-12499964 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-588
Cow position: chr22:14467954-14468519 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 309

Conread position: 23-619
Cow position: chr22:12544728-12545324 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 347
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 332, 325

Conread position: 23-625
Cow position: chr22:12399445-12398843 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-631
Cow position: chr22:14441939-14442547 (view UCSC Genome Browser custom track)
Alignm length: 611
Alignm identity: 354
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 341, 345

Conread position: 23-644
Cow position: chr22:12476410-12475790 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 135

Conread position: 23-644
Cow position: chr22:12498849-12499469 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 135

Conread position: 24-384
Cow position: chr22:12458124-12457762 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 67

Conread position: 24-588
Cow position: chr22:14429794-14430358 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 486

Conread position: 24-625
Cow position: chr22:12399360-12398759 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-625
Cow position: chr22:12431676-12431075 (view UCSC Genome Browser custom track)
Alignm length: 603
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 246, 236

Conread position: 24-627
Cow position: chr22:12499186-12499789 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 64

Conread position: 24-627
Cow position: chr22:12499270-12499873 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-644
Cow position: chr22:12399696-12399077 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 228

Conread position: 24-644
Cow position: chr22:12544645-12545264 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 378
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 252, 213

Conread position: 24-649
Cow position: chr22:11640670-11641293 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 24-649
Cow position: chr22:12431424-12430801 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 8

Conread position: 24-672
Cow position: chr22:12475989-12475339 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 619, 0

Conread position: 24-689
Cow position: chr22:14430214-14430880 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 406
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 61, 82

Conread position: 24-700
Cow position: chr22:12432264-12431586 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 239

Conread position: 25-388
Cow position: chr22:46654498-46654863 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 220
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 350, 0

Conread position: 28-588
Cow position: chr22:14429462-14430022 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 341
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 28, 13

Conread position: 35-591
Cow position: chr22:46654256-46654812 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 64

Conread position: 35-625
Cow position: chr22:46654088-46654678 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 64

Conread position: 35-626
Cow position: chr22:46654004-46654595 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 53

Conread position: 36-586
Cow position: chr22:14442120-14442667 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 332
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 303, 316

Conread position: 36-644
Cow position: chr22:11640766-11641373 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 559, 567

Conread position: 36-644
Cow position: chr22:14430394-14430994 (view UCSC Genome Browser custom track)
Alignm length: 612
Alignm identity: 362
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 51, 63

Conread position: 42-617
Cow position: chr22:12432498-12431923 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 485, 473

Conread position: 45-471
Cow position: chr22:14442297-14442720 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 257
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 19

Conread position: 46-699
Cow position: chr22:12399920-12399271 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 468, 81

Conread position: 54-621
Cow position: chr22:12419017-12418450 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 68-557
Cow position: chr22:11666471-11666960 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 301
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 119, 108

Conread position: 68-588
Cow position: chr22:11701125-11701645 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 327
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 119, 108

Conread position: 68-644
Cow position: chr22:12399820-12399245 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 103

Conread position: 117-702
Cow position: chr22:46654002-46654589 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 364
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 143, 150

Conread position: 130-644
Cow position: chr22:12432494-12431981 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 132

Conread position: 132-621
Cow position: chr22:12419023-12418534 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 137-588
Cow position: chr22:11666456-11666907 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 283
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 28, 21

Conread position: 137-625
Cow position: chr22:11701110-11701598 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 313
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 27, 21

Conread position: 185-626
Cow position: chr22:12385695-12385252 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 260

Conread position: 187-644
Cow position: chr22:12419321-12418848 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 282
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 236, 384

Conread position: 200-639
Cow position: chr22:12458620-12458183 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 58

Conread position: 207-449
Cow position: chr22:12545641-12545883 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 165
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 70, 58

Conread position: 222-671
Cow position: chr22:12544591-12545042 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 275
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 223, 211

Conread position: 234-644
Cow position: chr22:11701123-11701532 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 260
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 102, 118

Conread position: 254-709
Cow position: chr22:12385710-12385251 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 40

Conread position: 261-686
Cow position: chr22:12432447-12432020 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 374, 404

Conread position: 264-625
Cow position: chr22:11640574-11640935 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 121, 113

Conread position: 294-620
Cow position: chr22:12432498-12432172 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 212
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 439-649
Cow position: chr22:12476414-12476206 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 189, 0

Show alignments to all cow chromosomes.