Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-236 |
| Cow position: | chr23:24626518-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 214, 0 |
| Conread position: | 2-431 |
| Cow position: | chr23:25698530-25698101 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 2-471 |
| Cow position: | chr23:25660277-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 35 |
| Conread position: | 2-635 |
| Cow position: | chr23:25626324-25626954 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 258 |
| Conread position: | 3-221 |
| Cow position: | chr23:24560343-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-390 |
| Cow position: | chr23:25724084-25723698 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 3-430 |
| Cow position: | chr23:25626658-25627086 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 168 |
| Conread position: | 3-546 |
| Cow position: | chr23:25660194-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 168 |
| Conread position: | 3-593 |
| Cow position: | chr23:24536002-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 243 |
| Conread position: | 3-625 |
| Cow position: | chr23:24547287-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-625 |
| Cow position: | chr23:24639343-24639965 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 49 |
| Conread position: | 4-488 |
| Cow position: | chr23:24626268-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 25 |
| Conread position: | 4-536 |
| Cow position: | chr23:25698613-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 170 |
| Conread position: | 4-628 |
| Cow position: | chr23:25625990-25626611 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 591, 0 |
| Conread position: | 5-585 |
| Cow position: | chr23:24522271-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 373 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 109, 168 |
| Conread position: | 6-625 |
| Cow position: | chr23:24639262-24639881 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 127 |
| Conread position: | 9-388 |
| Cow position: | chr23:24639685-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-389 |
| Cow position: | chr23:24560505-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 78 |
| Conread position: | 9-424 |
| Cow position: | chr23:24654082-24654491 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 253, 244 |
| Conread position: | 9-541 |
| Cow position: | chr23:24522519-24521972 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 0 |
| Conread position: | 10-625 |
| Cow position: | chr23:24639434-24640049 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 164 |
| Conread position: | 15-473 |
| Cow position: | chr23:24560583-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-487 |
| Cow position: | chr23:24639607-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 178, 172 |
| Conread position: | 15-552 |
| Cow position: | chr23:24560667-24560130 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-558 |
| Cow position: | chr23:24639523-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-592 |
| Cow position: | chr23:24522754-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 67 |
| Conread position: | 23-641 |
| Cow position: | chr23:25626429-25627043 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 521, 135 |
| Conread position: | 24-473 |
| Cow position: | chr23:25626595-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 134 |
| Conread position: | 31-702 |
| Cow position: | chr23:24547342-24546670 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 7 |
| Conread position: | 36-698 |
| Cow position: | chr23:24560814-24560150 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 607, 591 |
| Conread position: | 39-653 |
| Cow position: | chr23:25660146-25660759 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 40-620 |
| Cow position: | chr23:25698660-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 43-425 |
| Cow position: | chr23:24522569-24522187 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 43-625 |
| Cow position: | chr23:24536046-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 458 |
| Conread position: | 44-534 |
| Cow position: | chr23:25626534-25627021 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 48 |
| Conread position: | 44-646 |
| Cow position: | chr23:24560722-24560121 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 583, 0 |
| Conread position: | 45-689 |
| Cow position: | chr23:24522814-24522173 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 23 |
| Conread position: | 54-392 |
| Cow position: | chr23:24654043-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 55-625 |
| Cow position: | chr23:24560879-24560309 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-649 |
| Cow position: | chr23:24639230-24639819 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 569, 0 |
| Conread position: | 65-457 |
| Cow position: | chr23:25724106-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 10 |
| Conread position: | 86-598 |
| Cow position: | chr23:25625988-25626500 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 395 |
| Conread position: | 88-552 |
| Cow position: | chr23:24626268-24626732 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 158 |
| Conread position: | 107-671 |
| Cow position: | chr23:25698677-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 65 |
| Conread position: | 115-700 |
| Cow position: | chr23:24560903-24560316 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 60 |
| Conread position: | 122-621 |
| Cow position: | chr23:25660145-25660644 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 214, 230 |
| Conread position: | 137-622 |
| Cow position: | chr23:24654042-24654521 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 374 |
| Conread position: | 138-627 |
| Cow position: | chr23:24639226-24639715 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 151-541 |
| Cow position: | chr23:25724104-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 170-638 |
| Cow position: | chr23:24626266-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 0 |
| Conread position: | 226-628 |
| Cow position: | chr23:24536031-24535629 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-625 |
| Cow position: | chr23:25698787-25698411 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 88, 79 |
| Conread position: | 234-625 |
| Cow position: | chr23:25724105-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 286 |
| Conread position: | 275-638 |
| Cow position: | chr23:25626009-25626372 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 277-700 |
| Cow position: | chr23:24639197-24639622 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 9, 29 |
| Conread position: | 305-627 |
| Cow position: | chr23:24654042-24654364 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 308-625 |
| Cow position: | chr23:25625958-25626275 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 312-627 |
| Cow position: | chr23:25724111-25723796 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 27, 15 |
| Conread position: | 375-627 |
| Cow position: | chr23:24536050-24535798 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-625 |
| Cow position: | chr23:25724131-25723882 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 46, 35 |
| Conread position: | 396-644 |
| Cow position: | chr23:24654049-24654296 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 231, 0 |
| Conread position: | 442-700 |
| Cow position: | chr23:24547352-24547092 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 459-686 |
| Cow position: | chr23:24536050-24535821 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 183, 173 |
Show alignments to all cow chromosomes.