Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 2-236
Cow position:
Alignm length: 235
Alignm identity: 160
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 214, 0

Conread position: 2-431
Cow position:
Alignm length: 434
Alignm identity: 266
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 92, 85

Conread position: 2-471
Cow position:
Alignm length: 471
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 35

Conread position: 2-635
Cow position:
Alignm length: 637
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 258

Conread position: 3-221
Cow position:
Alignm length: 219
Alignm identity: 152
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 3-390
Cow position:
Alignm length: 390
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 86

Conread position: 3-430
Cow position:
Alignm length: 430
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 168

Conread position: 3-546
Cow position:
Alignm length: 545
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 168

Conread position: 3-593
Cow position:
Alignm length: 594
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 243

Conread position: 3-625
Cow position:
Alignm length: 623
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-625
Cow position:
Alignm length: 625
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 49

Conread position: 4-488
Cow position:
Alignm length: 486
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 25

Conread position: 4-536
Cow position:
Alignm length: 537
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 170

Conread position: 4-628
Cow position:
Alignm length: 625
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 591, 0

Conread position: 5-585
Cow position:
Alignm length: 600
Alignm identity: 373
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 109, 168

Conread position: 6-625
Cow position:
Alignm length: 622
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 127

Conread position: 9-388
Cow position:
Alignm length: 380
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-389
Cow position:
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 78

Conread position: 9-424
Cow position:
Alignm length: 417
Alignm identity: 272
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 253, 244

Conread position: 9-541
Cow position:
Alignm length: 548
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 332, 0

Conread position: 10-625
Cow position:
Alignm length: 617
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 164

Conread position: 15-473
Cow position:
Alignm length: 459
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-487
Cow position:
Alignm length: 474
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 172

Conread position: 15-552
Cow position:
Alignm length: 538
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-558
Cow position:
Alignm length: 544
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-592
Cow position:
Alignm length: 572
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 67

Conread position: 23-641
Cow position:
Alignm length: 620
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 135

Conread position: 24-473
Cow position:
Alignm length: 453
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 134

Conread position: 31-702
Cow position:
Alignm length: 677
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 7

Conread position: 36-698
Cow position:
Alignm length: 666
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 607, 591

Conread position: 39-653
Cow position:
Alignm length: 618
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 119

Conread position: 40-620
Cow position:
Alignm length: 584
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 44

Conread position: 43-425
Cow position:
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 136

Conread position: 43-625
Cow position:
Alignm length: 585
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 475, 458

Conread position: 44-534
Cow position:
Alignm length: 493
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 48

Conread position: 44-646
Cow position:
Alignm length: 603
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 583, 0

Conread position: 45-689
Cow position:
Alignm length: 650
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 23

Conread position: 54-392
Cow position:
Alignm length: 339
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 55-625
Cow position:
Alignm length: 571
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 58-649
Cow position:
Alignm length: 592
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 569, 0

Conread position: 65-457
Cow position:
Alignm length: 396
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 10

Conread position: 86-598
Cow position:
Alignm length: 514
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 395

Conread position: 88-552
Cow position:
Alignm length: 466
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 158

Conread position: 107-671
Cow position:
Alignm length: 573
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 65

Conread position: 115-700
Cow position:
Alignm length: 590
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 60

Conread position: 122-621
Cow position:
Alignm length: 504
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 230

Conread position: 137-622
Cow position:
Alignm length: 490
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 374

Conread position: 138-627
Cow position:
Alignm length: 491
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 163

Conread position: 151-541
Cow position:
Alignm length: 394
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 7

Conread position: 170-638
Cow position:
Alignm length: 469
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 463, 0

Conread position: 226-628
Cow position:
Alignm length: 403
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 234-625
Cow position:
Alignm length: 394
Alignm identity: 257
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 88, 79

Conread position: 234-625
Cow position:
Alignm length: 394
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 286

Conread position: 275-638
Cow position:
Alignm length: 364
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 277-700
Cow position:
Alignm length: 433
Alignm identity: 278
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 9, 29

Conread position: 305-627
Cow position:
Alignm length: 323
Alignm identity: 211
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 308-625
Cow position:
Alignm length: 318
Alignm identity: 209
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 312-627
Cow position:
Alignm length: 317
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 27, 15

Conread position: 375-627
Cow position:
Alignm length: 253
Alignm identity: 170
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 376-625
Cow position:
Alignm length: 251
Alignm identity: 160
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 35

Conread position: 396-644
Cow position:
Alignm length: 249
Alignm identity: 158
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 231, 0

Conread position: 442-700
Cow position:
Alignm length: 261
Alignm identity: 172
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 201, 0

Conread position: 459-686
Cow position:
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 183, 173

Show alignments to all cow chromosomes.