Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-544 |
| Cow position: | chr24:17070500-17071042 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 338 |
| Conread position: | 2-546 |
| Cow position: | chr24:17078052-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-625 |
| Cow position: | chr24:17036253-17035630 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 2-637 |
| Cow position: | chr24:17070416-17071052 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 606 |
| Conread position: | 3-467 |
| Cow position: | chr24:17077967-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-481 |
| Cow position: | chr24:17035412-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 341, 336 |
| Conread position: | 3-625 |
| Cow position: | chr24:17036084-17035462 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-625 |
| Cow position: | chr24:17036168-17035546 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 337 |
| Conread position: | 3-644 |
| Cow position: | chr24:17035916-17035276 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 85 |
| Conread position: | 3-659 |
| Cow position: | chr24:17036000-17035347 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 624, 0 |
| Conread position: | 3-753 |
| Cow position: | chr24:17036336-17035583 (view UCSC Genome Browser custom track) |
| Alignm length: | 758 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 166, 157 |
| Conread position: | 5-625 |
| Cow position: | chr24:17078133-17077513 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 5-626 |
| Cow position: | chr24:17078217-17077596 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 608, 603 |
| Conread position: | 5-641 |
| Cow position: | chr24:17035747-17035112 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 244 |
| Conread position: | 9-471 |
| Cow position: | chr24:17070591-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-567 |
| Cow position: | chr24:17035490-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 61 |
| Conread position: | 9-625 |
| Cow position: | chr24:17036414-17035798 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 583 |
| Conread position: | 9-626 |
| Cow position: | chr24:17035574-17034957 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 495, 506 |
| Conread position: | 9-638 |
| Cow position: | chr24:17035658-17035029 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 587, 581 |
| Conread position: | 9-644 |
| Cow position: | chr24:17035826-17035192 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 80 |
| Conread position: | 15-323 |
| Cow position: | chr24:17013218-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 84, 72 |
| Conread position: | 15-625 |
| Cow position: | chr24:17036573-17035966 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 24 |
| Conread position: | 15-673 |
| Cow position: | chr24:17036492-17035832 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 315 |
| Conread position: | 24-306 |
| Cow position: | chr24:17070774-17071056 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 24, 31 |
| Conread position: | 25-698 |
| Cow position: | chr24:17078365-17077690 (view UCSC Genome Browser custom track) |
| Alignm length: | 676 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 618, 0 |
| Conread position: | 44-387 |
| Cow position: | chr24:17013165-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 111-491 |
| Cow position: | chr24:17013146-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 68 |
| Conread position: | 132-354 |
| Cow position: | chr24:16986433-16986655 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 131, 121 |
| Conread position: | 139-764 |
| Cow position: | chr24:17036617-17035992 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 142-685 |
| Cow position: | chr24:17070388-17070932 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 214-606 |
| Cow position: | chr24:17013165-17013557 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 125 |
| Conread position: | 226-437 |
| Cow position: | chr24:16986443-16986654 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 99 |
| Conread position: | 279-521 |
| Cow position: | chr24:16986412-16986654 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 152, 130 |
| Conread position: | 280-628 |
| Cow position: | chr24:17013147-17013495 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 141 |
| Conread position: | 379-599 |
| Cow position: | chr24:16986428-16986648 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 136, 114 |
Show alignments to all cow chromosomes.