Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 1-425
Cow position:
Alignm length: 425
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 373, 0

Conread position: 1-605
Cow position:
Alignm length: 607
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 157

Conread position: 1-625
Cow position:
Alignm length: 628
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 157

Conread position: 1-644
Cow position:
Alignm length: 645
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 157

Conread position: 1-644
Cow position:
Alignm length: 644
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 626, 0

Conread position: 2-418
Cow position:
Alignm length: 417
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-449
Cow position:
Alignm length: 450
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 38

Conread position: 2-541
Cow position:
Alignm length: 543
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 167

Conread position: 2-620
Cow position:
Alignm length: 623
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 359

Conread position: 2-625
Cow position:
Alignm length: 627
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 14

Conread position: 2-626
Cow position:
Alignm length: 626
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 156

Conread position: 2-626
Cow position:
Alignm length: 625
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 410, 0

Conread position: 2-628
Cow position:
Alignm length: 627
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-668
Cow position:
Alignm length: 669
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 85

Conread position: 2-700
Cow position:
Alignm length: 704
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 2-702
Cow position:
Alignm length: 705
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 39

Conread position: 3-382
Cow position:
Alignm length: 382
Alignm identity: 248
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 161, 155

Conread position: 3-502
Cow position:
Alignm length: 502
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 33

Conread position: 3-520
Cow position:
Alignm length: 519
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 42

Conread position: 3-627
Cow position:
Alignm length: 625
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-638
Cow position:
Alignm length: 637
Alignm identity: 374
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 62, 77

Conread position: 3-656
Cow position:
Alignm length: 654
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 0

Conread position: 5-473
Cow position:
Alignm length: 470
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 301

Conread position: 5-497
Cow position:
Alignm length: 494
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 439, 90

Conread position: 5-641
Cow position:
Alignm length: 638
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 493

Conread position: 5-654
Cow position:
Alignm length: 656
Alignm identity: 393
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 90, 79

Conread position: 6-382
Cow position:
Alignm length: 377
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-493
Cow position:
Alignm length: 493
Alignm identity: 312
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 71

Conread position: 6-593
Cow position:
Alignm length: 590
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 57

Conread position: 6-625
Cow position:
Alignm length: 620
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-640
Cow position:
Alignm length: 636
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 152

Conread position: 6-701
Cow position:
Alignm length: 701
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 639, 622

Conread position: 8-419
Cow position:
Alignm length: 412
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 8-625
Cow position:
Alignm length: 619
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 150

Conread position: 8-625
Cow position:
Alignm length: 624
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 17

Conread position: 9-306
Cow position:
Alignm length: 298
Alignm identity: 201
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 9-471
Cow position:
Alignm length: 472
Alignm identity: 298
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 46, 33

Conread position: 9-499
Cow position:
Alignm length: 506
Alignm identity: 319
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 84, 99

Conread position: 9-625
Cow position:
Alignm length: 618
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 149

Conread position: 9-637
Cow position:
Alignm length: 630
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 171

Conread position: 9-639
Cow position:
Alignm length: 631
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 619, 0

Conread position: 12-638
Cow position:
Alignm length: 628
Alignm identity: 359
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 231, 254

Conread position: 15-299
Cow position:
Alignm length: 285
Alignm identity: 180
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 15-373
Cow position:
Alignm length: 361
Alignm identity: 226
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 75

Conread position: 15-467
Cow position:
Alignm length: 454
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 317

Conread position: 15-496
Cow position:
Alignm length: 483
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 0

Conread position: 15-546
Cow position:
Alignm length: 533
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 134

Conread position: 15-626
Cow position:
Alignm length: 616
Alignm identity: 377
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 104, 96

Conread position: 15-649
Cow position:
Alignm length: 637
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 76

Conread position: 18-544
Cow position:
Alignm length: 531
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 110

Conread position: 18-621
Cow position:
Alignm length: 604
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-700
Cow position:
Alignm length: 687
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 627, 609

Conread position: 22-671
Cow position:
Alignm length: 653
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 613, 643

Conread position: 23-541
Cow position:
Alignm length: 520
Alignm identity: 315
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 245, 226

Conread position: 23-588
Cow position:
Alignm length: 572
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 73

Conread position: 24-547
Cow position:
Alignm length: 533
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 230

Conread position: 24-557
Cow position:
Alignm length: 535
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 528, 0

Conread position: 24-588
Cow position:
Alignm length: 565
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 24-625
Cow position:
Alignm length: 613
Alignm identity: 378
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 252, 220

Conread position: 27-649
Cow position:
Alignm length: 626
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 29

Conread position: 35-625
Cow position:
Alignm length: 591
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 37-619
Cow position:
Alignm length: 584
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 13

Conread position: 39-469
Cow position:
Alignm length: 432
Alignm identity: 270
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 135, 119

Conread position: 39-645
Cow position:
Alignm length: 613
Alignm identity: 361
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 39, 48

Conread position: 41-621
Cow position:
Alignm length: 583
Alignm identity: 349
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 124, 117

Conread position: 41-621
Cow position:
Alignm length: 582
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 10

Conread position: 41-626
Cow position:
Alignm length: 589
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 52

Conread position: 42-625
Cow position:
Alignm length: 585
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 166

Conread position: 43-619
Cow position:
Alignm length: 580
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 107

Conread position: 44-374
Cow position:
Alignm length: 334
Alignm identity: 228
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 159, 147

Conread position: 44-400
Cow position:
Alignm length: 357
Alignm identity: 235
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 45-493
Cow position:
Alignm length: 451
Alignm identity: 281
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 55, 43

Conread position: 45-607
Cow position:
Alignm length: 568
Alignm identity: 339
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 119, 113

Conread position: 48-649
Cow position:
Alignm length: 608
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 110

Conread position: 65-627
Cow position:
Alignm length: 565
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 73

Conread position: 65-628
Cow position:
Alignm length: 564
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 68-558
Cow position:
Alignm length: 491
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 69-387
Cow position:
Alignm length: 320
Alignm identity: 218
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 116, 99

Conread position: 69-625
Cow position:
Alignm length: 559
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 12

Conread position: 72-631
Cow position:
Alignm length: 561
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 47

Conread position: 75-625
Cow position:
Alignm length: 555
Alignm identity: 343
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 94, 98

Conread position: 82-649
Cow position:
Alignm length: 572
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 46

Conread position: 84-649
Cow position:
Alignm length: 567
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 21

Conread position: 93-333
Cow position:
Alignm length: 242
Alignm identity: 162
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 76, 82

Conread position: 102-675
Cow position:
Alignm length: 577
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 110

Conread position: 111-533
Cow position:
Alignm length: 427
Alignm identity: 270
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 51, 11

Conread position: 118-609
Cow position:
Alignm length: 492
Alignm identity: 303
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 276, 0

Conread position: 124-609
Cow position:
Alignm length: 488
Alignm identity: 284
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 191, 209

Conread position: 124-647
Cow position:
Alignm length: 526
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 168

Conread position: 129-437
Cow position:
Alignm length: 310
Alignm identity: 208
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 50, 42

Conread position: 129-639
Cow position:
Alignm length: 513
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 79

Conread position: 130-626
Cow position:
Alignm length: 499
Alignm identity: 308
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 146, 137

Conread position: 151-484
Cow position:
Alignm length: 336
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 28, 20

Conread position: 151-630
Cow position:
Alignm length: 482
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 294

Conread position: 178-516
Cow position:
Alignm length: 342
Alignm identity: 212
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 139, 0

Conread position: 186-690
Cow position:
Alignm length: 509
Alignm identity: 312
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 60, 64

Conread position: 201-417
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 204-626
Cow position:
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 51

Conread position: 212-582
Cow position:
Alignm length: 373
Alignm identity: 224
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 56, 41

Conread position: 213-542
Cow position:
Alignm length: 331
Alignm identity: 212
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 186, 192

Conread position: 214-457
Cow position:
Alignm length: 245
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 198, 210

Conread position: 219-550
Cow position:
Alignm length: 332
Alignm identity: 206
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 261-599
Cow position:
Alignm length: 342
Alignm identity: 221
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 138, 0

Conread position: 261-627
Cow position:
Alignm length: 390
Alignm identity: 249
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 223, 334

Conread position: 276-626
Cow position:
Alignm length: 354
Alignm identity: 218
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 138, 153

Conread position: 291-619
Cow position:
Alignm length: 333
Alignm identity: 222
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 99, 110

Conread position: 300-625
Cow position:
Alignm length: 328
Alignm identity: 208
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 9, 41

Conread position: 308-588
Cow position:
Alignm length: 283
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 136, 11

Conread position: 345-585
Cow position:
Alignm length: 241
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 363-625
Cow position:
Alignm length: 264
Alignm identity: 169
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 87

Show alignments to all cow chromosomes.