Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-302 |
| Cow position: | chr28:9253312-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-506 |
| Cow position: | chr28:9299262-9299761 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 334, 311 |
| Conread position: | 2-510 |
| Cow position: | chr28:34696036-34696545 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 309 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 14, 157 |
| Conread position: | 2-560 |
| Cow position: | chr28:11334096-11333538 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 443, 432 |
| Conread position: | 2-581 |
| Cow position: | chr28:9298609-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 56 |
| Conread position: | 2-619 |
| Cow position: | chr28:7757961-7758562 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 0 |
| Conread position: | 2-634 |
| Cow position: | chr28:7757625-7758256 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 626, 0 |
| Conread position: | 2-644 |
| Cow position: | chr28:7758129-7758754 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 430, 188 |
| Conread position: | 3-270 |
| Cow position: | chr28:33210354-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 72, 86 |
| Conread position: | 3-380 |
| Cow position: | chr28:7758534-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 262, 243 |
| Conread position: | 3-468 |
| Cow position: | chr28:34696122-34696585 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 442, 429 |
| Conread position: | 3-529 |
| Cow position: | chr28:9253145-9253672 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 469, 478 |
| Conread position: | 3-649 |
| Cow position: | chr28:9289798-9290433 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 81 |
| Conread position: | 3-661 |
| Cow position: | chr28:7810306-7810954 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 229 |
| Conread position: | 3-729 |
| Cow position: | chr28:7757710-7758440 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 155 |
| Conread position: | 4-625 |
| Cow position: | chr28:7757459-7758080 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 53 |
| Conread position: | 4-649 |
| Cow position: | chr28:7757543-7758186 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 170 |
| Conread position: | 4-670 |
| Cow position: | chr28:9252978-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 631, 0 |
| Conread position: | 5-407 |
| Cow position: | chr28:7758452-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 95 |
| Conread position: | 5-587 |
| Cow position: | chr28:9290132-9290708 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 5-602 |
| Cow position: | chr28:11333757-11333158 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 239 |
| Conread position: | 5-621 |
| Cow position: | chr28:9299111-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 548, 80 |
| Conread position: | 5-658 |
| Cow position: | chr28:7758048-7758683 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 6-420 |
| Cow position: | chr28:9290297-9290709 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 6-424 |
| Cow position: | chr28:34673485-34673902 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 154, 7 |
| Conread position: | 6-625 |
| Cow position: | chr28:7758217-7758819 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 6-644 |
| Cow position: | chr28:9252895-9253533 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 622 |
| Conread position: | 8-626 |
| Cow position: | chr28:9298948-9299550 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 47 |
| Conread position: | 9-625 |
| Cow position: | chr28:34695876-34696492 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 430 |
| Conread position: | 10-644 |
| Cow position: | chr28:11333836-11333203 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 54 |
| Conread position: | 15-509 |
| Cow position: | chr28:9290224-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 36 |
| Conread position: | 15-625 |
| Cow position: | chr28:11334167-11333557 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 69 |
| Conread position: | 21-690 |
| Cow position: | chr28:9289978-9290645 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 5 |
| Conread position: | 22-537 |
| Cow position: | chr28:34673416-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 316 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 161 |
| Conread position: | 24-543 |
| Cow position: | chr28:7758387-7758906 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 391 |
| Conread position: | 24-639 |
| Cow position: | chr28:7757233-7757841 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 95 |
| Conread position: | 26-649 |
| Cow position: | chr28:7757397-7758018 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 602, 0 |
| Conread position: | 36-352 |
| Cow position: | chr28:33210303-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 138 |
| Conread position: | 38-543 |
| Cow position: | chr28:34679565-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 331 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 19 |
| Conread position: | 41-436 |
| Cow position: | chr28:33210223-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 255 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 43-621 |
| Cow position: | chr28:34673353-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 360 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 115, 139 |
| Conread position: | 43-627 |
| Cow position: | chr28:9298567-9299145 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 11 |
| Conread position: | 45-603 |
| Cow position: | chr28:34695996-34696553 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 335 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 354, 358 |
| Conread position: | 49-649 |
| Cow position: | chr28:9252524-9253117 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 358 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 54-627 |
| Cow position: | chr28:11334212-11333639 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 524, 531 |
| Conread position: | 56-638 |
| Cow position: | chr28:7757343-7757925 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 47 |
| Conread position: | 60-625 |
| Cow position: | chr28:34695843-34696408 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-626 |
| Cow position: | chr28:7810284-7810836 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 241 |
| Conread position: | 108-413 |
| Cow position: | chr28:7809811-7810111 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 186-649 |
| Cow position: | chr28:9289729-9290186 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 60, 77 |
| Conread position: | 213-606 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 198, 204 |
| Conread position: | 222-644 |
| Cow position: | chr28:34673364-34673785 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 266 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 271, 279 |
| Conread position: | 234-644 |
| Cow position: | chr28:7810285-7810685 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 276-671 |
| Cow position: | chr28:34679579-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 160, 30 |
| Conread position: | 293-621 |
| Cow position: | chr28:33210223-33210552 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 295-672 |
| Cow position: | chr28:34673353-34673732 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 120, 139 |
| Conread position: | 309-649 |
| Cow position: | chr28:7810276-7810605 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 252, 0 |
Show alignments to all cow chromosomes.