Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 1-644
Cow position:
Alignm length: 650
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 78

Conread position: 1-644
Cow position:
Alignm length: 645
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 249

Conread position: 1-935
Cow position:
Alignm length: 951
Alignm identity: 838
Alignm E-value: 0
Alignm gaps (pig, cow): 636, 0

Conread position: 2-367
Cow position:
Alignm length: 366
Alignm identity: 240
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 2-430
Cow position:
Alignm length: 430
Alignm identity: 270
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 164, 178

Conread position: 2-550
Cow position:
Alignm length: 550
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 511, 471

Conread position: 2-627
Cow position:
Alignm length: 629
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 247

Conread position: 2-688
Cow position:
Alignm length: 690
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 641, 626

Conread position: 3-263
Cow position:
Alignm length: 263
Alignm identity: 176
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 186, 155

Conread position: 3-347
Cow position:
Alignm length: 345
Alignm identity: 213
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 3-631
Cow position:
Alignm length: 631
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 421

Conread position: 3-644
Cow position:
Alignm length: 643
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 344, 336

Conread position: 3-649
Cow position:
Alignm length: 653
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 48

Conread position: 3-691
Cow position:
Alignm length: 693
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 87

Conread position: 4-639
Cow position:
Alignm length: 636
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 623, 0

Conread position: 4-672
Cow position:
Alignm length: 672
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 511, 504

Conread position: 5-604
Cow position:
Alignm length: 600
Alignm identity: 349
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 62, 0

Conread position: 6-334
Cow position:
Alignm length: 332
Alignm identity: 215
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 73

Conread position: 9-599
Cow position:
Alignm length: 595
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 162

Conread position: 9-669
Cow position:
Alignm length: 664
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 436

Conread position: 15-619
Cow position:
Alignm length: 605
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-638
Cow position:
Alignm length: 624
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-644
Cow position:
Alignm length: 631
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 155

Conread position: 15-704
Cow position:
Alignm length: 696
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 237

Conread position: 21-334
Cow position:
Alignm length: 319
Alignm identity: 213
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 180, 149

Conread position: 21-482
Cow position:
Alignm length: 467
Alignm identity: 300
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 81, 87

Conread position: 21-586
Cow position:
Alignm length: 576
Alignm identity: 362
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 192, 156

Conread position: 21-588
Cow position:
Alignm length: 577
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 76

Conread position: 21-645
Cow position:
Alignm length: 629
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 149

Conread position: 22-515
Cow position:
Alignm length: 495
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 153

Conread position: 23-169
Cow position:
Alignm length: 147
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 23-502
Cow position:
Alignm length: 486
Alignm identity: 303
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 78, 70

Conread position: 23-526
Cow position:
Alignm length: 504
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 23-586
Cow position:
Alignm length: 571
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 83

Conread position: 23-587
Cow position:
Alignm length: 568
Alignm identity: 346
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 230, 247

Conread position: 23-588
Cow position:
Alignm length: 571
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 70

Conread position: 23-588
Cow position:
Alignm length: 571
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 70

Conread position: 23-599
Cow position:
Alignm length: 577
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 23-625
Cow position:
Alignm length: 603
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 23-673
Cow position:
Alignm length: 658
Alignm identity: 387
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 241, 250

Conread position: 23-676
Cow position:
Alignm length: 664
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 223

Conread position: 23-763
Cow position:
Alignm length: 746
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 575, 567

Conread position: 24-502
Cow position:
Alignm length: 483
Alignm identity: 307
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 29, 37

Conread position: 24-588
Cow position:
Alignm length: 571
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 249

Conread position: 24-649
Cow position:
Alignm length: 627
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 240, 244

Conread position: 25-461
Cow position:
Alignm length: 440
Alignm identity: 273
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 62, 72

Conread position: 30-546
Cow position:
Alignm length: 517
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-586
Cow position:
Alignm length: 561
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 64

Conread position: 30-644
Cow position:
Alignm length: 616
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 140

Conread position: 34-672
Cow position:
Alignm length: 648
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 136

Conread position: 35-644
Cow position:
Alignm length: 610
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 593, 0

Conread position: 36-701
Cow position:
Alignm length: 673
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 48

Conread position: 39-693
Cow position:
Alignm length: 659
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 295

Conread position: 41-588
Cow position:
Alignm length: 558
Alignm identity: 342
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 65, 43

Conread position: 41-588
Cow position:
Alignm length: 555
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 130

Conread position: 41-672
Cow position:
Alignm length: 639
Alignm identity: 390
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 47, 67

Conread position: 42-649
Cow position:
Alignm length: 609
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 553, 9

Conread position: 45-587
Cow position:
Alignm length: 555
Alignm identity: 341
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 10, 135

Conread position: 51-625
Cow position:
Alignm length: 576
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 127

Conread position: 54-649
Cow position:
Alignm length: 596
Alignm identity: 356
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 109, 0

Conread position: 73-653
Cow position:
Alignm length: 590
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 177

Conread position: 103-626
Cow position:
Alignm length: 525
Alignm identity: 317
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 494, 485

Conread position: 105-588
Cow position:
Alignm length: 489
Alignm identity: 297
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 81, 88

Conread position: 116-625
Cow position:
Alignm length: 511
Alignm identity: 316
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 310, 304

Conread position: 131-590
Cow position:
Alignm length: 467
Alignm identity: 297
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 55, 47

Conread position: 200-545
Cow position:
Alignm length: 347
Alignm identity: 230
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 313, 302

Conread position: 214-638
Cow position:
Alignm length: 428
Alignm identity: 270
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 88, 105

Conread position: 221-649
Cow position:
Alignm length: 432
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 221

Conread position: 273-590
Cow position:
Alignm length: 319
Alignm identity: 197
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 64, 88

Conread position: 339-627
Cow position:
Alignm length: 290
Alignm identity: 187
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 92, 82

Show alignments to all cow chromosomes.