Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 1-644 |
| Cow position: | chr7:1439510-1440152 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 78 |
| Conread position: | 1-644 |
| Cow position: | chr7:42878984-42878342 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 249 |
| Conread position: | 1-935 |
| Cow position: | chr7:42878900-42877950 (view UCSC Genome Browser custom track) |
| Alignm length: | 951 |
| Alignm identity: | 838 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 636, 0 |
| Conread position: | 2-367 |
| Cow position: | chr7:18390455-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 240 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-430 |
| Cow position: | chr7:1438290-1438718 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 164, 178 |
| Conread position: | 2-550 |
| Cow position: | chr7:3180326-3180873 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 471 |
| Conread position: | 2-627 |
| Cow position: | chr7:1014398-1015017 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 247 |
| Conread position: | 2-688 |
| Cow position: | chr7:3180074-3180762 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 641, 626 |
| Conread position: | 3-263 |
| Cow position: | chr7:1440016-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 186, 155 |
| Conread position: | 3-347 |
| Cow position: | chr7:1438375-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 213 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-631 |
| Cow position: | chr7:11601062-11600433 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 421 |
| Conread position: | 3-644 |
| Cow position: | chr7:42879066-42878426 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 336 |
| Conread position: | 3-649 |
| Cow position: | chr7:1439595-1440240 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 3-691 |
| Cow position: | chr7:1014315-1014999 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 87 |
| Conread position: | 4-639 |
| Cow position: | chr7:42879149-42878515 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 623, 0 |
| Conread position: | 4-672 |
| Cow position: | chr7:42879233-42878563 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 511, 504 |
| Conread position: | 5-604 |
| Cow position: | chr7:1438127-1438723 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 349 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 6-334 |
| Cow position: | chr7:1015152-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 73 |
| Conread position: | 9-599 |
| Cow position: | chr7:1014903-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 162 |
| Conread position: | 9-669 |
| Cow position: | chr7:3180165-3180825 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 423, 436 |
| Conread position: | 15-619 |
| Cow position: | chr7:18390216-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-638 |
| Cow position: | chr7:3179919-3180542 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-644 |
| Cow position: | chr7:3180003-3180631 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 155 |
| Conread position: | 15-704 |
| Cow position: | chr7:3179751-3180444 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 237 |
| Conread position: | 21-334 |
| Cow position: | chr7:8325801-8326114 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 180, 149 |
| Conread position: | 21-482 |
| Cow position: | chr7:8277908-8278369 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 300 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 81, 87 |
| Conread position: | 21-586 |
| Cow position: | chr7:8243195-8243759 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 362 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 192, 156 |
| Conread position: | 21-588 |
| Cow position: | chr7:8325297-8325864 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 21-645 |
| Cow position: | chr7:18390138-18390763 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 149 |
| Conread position: | 22-515 |
| Cow position: | chr7:1438226-1438719 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 153 |
| Conread position: | 23-169 |
| Cow position: | chr7:11434425-11434279 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-502 |
| Cow position: | chr7:8278246-8278716 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 78, 70 |
| Conread position: | 23-526 |
| Cow position: | chr7:1439786-1440287 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 23-586 |
| Cow position: | chr7:8325131-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 83 |
| Conread position: | 23-587 |
| Cow position: | chr7:8243448-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 346 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 230, 247 |
| Conread position: | 23-588 |
| Cow position: | chr7:8277574-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 23-588 |
| Cow position: | chr7:8325551-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 70 |
| Conread position: | 23-599 |
| Cow position: | chr7:1439703-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 23-625 |
| Cow position: | chr7:1014833-1015435 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-673 |
| Cow position: | chr7:8243029-8243680 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 387 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 241, 250 |
| Conread position: | 23-676 |
| Cow position: | chr7:8277742-8278398 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 223 |
| Conread position: | 23-763 |
| Cow position: | chr7:11601209-11600466 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 567 |
| Conread position: | 24-502 |
| Cow position: | chr7:11434753-11434282 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 307 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 24-588 |
| Cow position: | chr7:8324964-8325528 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 249 |
| Conread position: | 24-649 |
| Cow position: | chr7:1014750-1015373 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 244 |
| Conread position: | 25-461 |
| Cow position: | chr7:11434668-11434239 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 72 |
| Conread position: | 30-546 |
| Cow position: | chr7:18390315-18390831 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-586 |
| Cow position: | chr7:8278001-8278555 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 30-644 |
| Cow position: | chr7:3179850-3180463 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 140 |
| Conread position: | 34-672 |
| Cow position: | chr7:8277837-8278475 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 136 |
| Conread position: | 35-644 |
| Cow position: | chr7:42879370-42878762 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 593, 0 |
| Conread position: | 36-701 |
| Cow position: | chr7:1014516-1015179 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 39-693 |
| Cow position: | chr7:1014267-1014917 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 306, 295 |
| Conread position: | 41-588 |
| Cow position: | chr7:8277256-8277803 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 342 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 65, 43 |
| Conread position: | 41-588 |
| Cow position: | chr7:8324729-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 130 |
| Conread position: | 41-672 |
| Cow position: | chr7:8243382-8244013 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 390 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 47, 67 |
| Conread position: | 42-649 |
| Cow position: | chr7:42879277-42878674 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 9 |
| Conread position: | 45-587 |
| Cow position: | chr7:8277510-8278054 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 341 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 10, 135 |
| Conread position: | 51-625 |
| Cow position: | chr7:18390000-18390574 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 127 |
| Conread position: | 54-649 |
| Cow position: | chr7:1438092-1438683 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 356 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 73-653 |
| Cow position: | chr7:1439410-1439993 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 177 |
| Conread position: | 103-626 |
| Cow position: | chr7:1014079-1014602 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 494, 485 |
| Conread position: | 105-588 |
| Cow position: | chr7:8242859-8243342 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 81, 88 |
| Conread position: | 116-625 |
| Cow position: | chr7:1014260-1014763 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 316 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 310, 304 |
| Conread position: | 131-590 |
| Cow position: | chr7:8324735-8325194 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 297 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 55, 47 |
| Conread position: | 200-545 |
| Cow position: | chr7:1014260-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 313, 302 |
| Conread position: | 214-638 |
| Cow position: | chr7:18389995-18390418 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 88, 105 |
| Conread position: | 221-649 |
| Cow position: | chr7:3179705-3180131 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 221 |
| Conread position: | 273-590 |
| Cow position: | chr7:8242859-8243176 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 339-627 |
| Cow position: | chr7:3179655-3179943 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 92, 82 |
Show alignments to all cow chromosomes.