Cow genome map
| Conread name: | Ss1.1-ruio05_f13.5.5 |
| Conread position: | 2-294 |
| Cow position: | chr8:46817094-46817386 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 248 |
| Conread position: | 2-496 |
| Cow position: | chr8:45201479-45201973 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-627 |
| Cow position: | chr8:46816674-46817299 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 156 |
| Conread position: | 2-632 |
| Cow position: | chr8:45201563-45202183 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 246 |
| Conread position: | 2-644 |
| Cow position: | chr8:45201311-45201952 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 626, 0 |
| Conread position: | 3-407 |
| Cow position: | chr8:6958038-6957635 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 255, 264 |
| Conread position: | 3-617 |
| Cow position: | chr8:46816339-46816953 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-628 |
| Cow position: | chr8:46816003-46816628 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-702 |
| Cow position: | chr8:46815757-46816452 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 27 |
| Conread position: | 3-760 |
| Cow position: | chr8:46816591-46817351 (view UCSC Genome Browser custom track) |
| Alignm length: | 764 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 429, 442 |
| Conread position: | 4-214 |
| Cow position: | chr8:46817180-46817390 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-625 |
| Cow position: | chr8:46815917-46816541 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 4-627 |
| Cow position: | chr8:46816760-46817383 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-708 |
| Cow position: | chr8:46816256-46816962 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 639, 0 |
| Conread position: | 4-765 |
| Cow position: | chr8:45201061-45201825 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 623 |
| Conread position: | 5-627 |
| Cow position: | chr8:46816509-46817131 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 432 |
| Conread position: | 5-649 |
| Cow position: | chr8:45201398-45202042 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-700 |
| Cow position: | chr8:48407250-48406553 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 166 |
| Conread position: | 6-383 |
| Cow position: | chr8:46817014-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-627 |
| Cow position: | chr8:46816090-46816711 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 85 |
| Conread position: | 6-644 |
| Cow position: | chr8:45201147-45201784 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 622, 0 |
| Conread position: | 6-644 |
| Cow position: | chr8:46816174-46816811 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 152 |
| Conread position: | 6-644 |
| Cow position: | chr8:48407585-48406948 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 622, 0 |
| Conread position: | 6-701 |
| Cow position: | chr8:48407082-48406382 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 177 |
| Conread position: | 6-702 |
| Cow position: | chr8:45201231-45201929 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 637, 0 |
| Conread position: | 8-644 |
| Cow position: | chr8:46816428-46817063 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 620, 0 |
| Conread position: | 9-551 |
| Cow position: | chr8:46816849-46817391 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 159 |
| Conread position: | 12-627 |
| Cow position: | chr8:55581041-55581656 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-324 |
| Cow position: | chr8:48406568-48406259 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 254, 247 |
| Conread position: | 15-547 |
| Cow position: | chr8:55581128-55581660 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 242 |
| Conread position: | 15-631 |
| Cow position: | chr8:48407408-48406792 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 583, 577 |
| Conread position: | 15-644 |
| Cow position: | chr8:45200988-45201616 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 15-644 |
| Cow position: | chr8:48406988-48406360 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 275, 268 |
| Conread position: | 15-672 |
| Cow position: | chr8:55580876-55581535 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 593, 598 |
| Conread position: | 18-688 |
| Cow position: | chr8:48407489-48406817 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 163 |
| Conread position: | 18-700 |
| Cow position: | chr8:48407657-48406973 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 19-386 |
| Cow position: | chr8:55581385-55581751 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 324, 5 |
| Conread position: | 23-378 |
| Cow position: | chr8:48406644-48406289 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 148, 159 |
| Conread position: | 23-455 |
| Cow position: | chr8:55581304-55581735 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 23-502 |
| Cow position: | chr8:55581220-55581699 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 135 |
| Conread position: | 24-634 |
| Cow position: | chr8:45200829-45201438 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 604, 0 |
| Conread position: | 24-639 |
| Cow position: | chr8:48406895-48406281 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 64 |
| Conread position: | 31-644 |
| Cow position: | chr8:55580808-55581420 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 48-701 |
| Cow position: | chr8:45200937-45201594 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 595, 579 |
| Conread position: | 63-542 |
| Cow position: | chr8:6958062-6957586 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 300 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 273, 288 |
| Conread position: | 65-644 |
| Cow position: | chr8:45200786-45201364 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 228 |
| Conread position: | 101-625 |
| Cow position: | chr8:48407658-48407134 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 151-631 |
| Cow position: | chr8:6958058-6957581 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 305 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 348, 269 |
| Conread position: | 231-711 |
| Cow position: | chr8:6958062-6957583 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 430, 271 |
| Conread position: | 269-672 |
| Cow position: | chr8:48407658-48407253 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 263 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 78, 58 |
| Conread position: | 280-700 |
| Cow position: | chr8:55580805-55581227 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 20, 29 |
Show alignments to all cow chromosomes.