Cow genome map
Conread name: | Ss1.1-ruio05_f13.5.5 |
Conread position: | 1-708 |
Cow position: | chrX:25325715-25325006 (view UCSC Genome Browser custom track) |
Alignm length: | 713 |
Alignm identity: | 500 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 443, 431 |
Conread position: | 1-765 |
Cow position: | chrX:25325547-25324780 (view UCSC Genome Browser custom track) |
Alignm length: | 771 |
Alignm identity: | 535 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 157, 174 |
Conread position: | 2-617 |
Cow position: | chrX:25324790-25324179 (view UCSC Genome Browser custom track) |
Alignm length: | 617 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 419, 443 |
Conread position: | 2-672 |
Cow position: | chrX:29045618-29044967 (view UCSC Genome Browser custom track) |
Alignm length: | 675 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 342, 245 |
Conread position: | 2-702 |
Cow position: | chrX:25325210-25324508 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 488 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 443, 431 |
Conread position: | 3-627 |
Cow position: | chrX:25325041-25324417 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 444 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 3-644 |
Cow position: | chrX:25325377-25324737 (view UCSC Genome Browser custom track) |
Alignm length: | 642 |
Alignm identity: | 449 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 625, 0 |
Conread position: | 3-708 |
Cow position: | chrX:25325629-25324922 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 489 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 247, 240 |
Conread position: | 4-389 |
Cow position: | chrX:29045049-29044663 (view UCSC Genome Browser custom track) |
Alignm length: | 387 |
Alignm identity: | 294 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 380, 0 |
Conread position: | 4-555 |
Cow position: | chrX:25310017-25310568 (view UCSC Genome Browser custom track) |
Alignm length: | 554 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 90, 95 |
Conread position: | 4-708 |
Cow position: | chrX:25325124-25324418 (view UCSC Genome Browser custom track) |
Alignm length: | 707 |
Alignm identity: | 495 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 639, 0 |
Conread position: | 5-149 |
Cow position: | chrX:29044796-29044652 (view UCSC Genome Browser custom track) |
Alignm length: | 145 |
Alignm identity: | 108 |
Alignm E-value: | 2e-24 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 5-232 |
Cow position: | chrX:29044880-29044653 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 167 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 5-625 |
Cow position: | chrX:25309934-25310554 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 340, 346 |
Conread position: | 5-627 |
Cow position: | chrX:25324871-25324249 (view UCSC Genome Browser custom track) |
Alignm length: | 623 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 5-656 |
Cow position: | chrX:25309766-25310415 (view UCSC Genome Browser custom track) |
Alignm length: | 654 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 419, 430 |
Conread position: | 6-312 |
Cow position: | chrX:29044963-29044657 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 6-560 |
Cow position: | chrX:29045215-29044661 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 393 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 439, 427 |
Conread position: | 6-627 |
Cow position: | chrX:25325290-25324669 (view UCSC Genome Browser custom track) |
Alignm length: | 622 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 7-708 |
Cow position: | chrX:25324953-25324250 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 480 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 83 |
Conread position: | 9-674 |
Cow position: | chrX:25309854-25310521 (view UCSC Genome Browser custom track) |
Alignm length: | 671 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 243 |
Conread position: | 15-322 |
Cow position: | chrX:25310280-25310586 (view UCSC Genome Browser custom track) |
Alignm length: | 308 |
Alignm identity: | 207 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 300, 0 |
Conread position: | 15-502 |
Cow position: | chrX:13826726-13826239 (view UCSC Genome Browser custom track) |
Alignm length: | 489 |
Alignm identity: | 286 |
Alignm E-value: | 3e-28 |
Alignm gaps (pig, cow): | 85, 69 |
Conread position: | 15-649 |
Cow position: | chrX:29045773-29045162 (view UCSC Genome Browser custom track) |
Alignm length: | 636 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 328, 310 |
Conread position: | 18-639 |
Cow position: | chrX:29045287-29044666 (view UCSC Genome Browser custom track) |
Alignm length: | 623 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 150, 140 |
Conread position: | 19-702 |
Cow position: | chrX:29045367-29044685 (view UCSC Genome Browser custom track) |
Alignm length: | 687 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 36 |
Conread position: | 23-474 |
Cow position: | chrX:25310120-25310571 (view UCSC Genome Browser custom track) |
Alignm length: | 453 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 76 |
Conread position: | 23-588 |
Cow position: | chrX:12627333-12627896 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 356 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 57, 77 |
Conread position: | 23-638 |
Cow position: | chrX:25309700-25310315 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 34 |
Conread position: | 24-649 |
Cow position: | chrX:25325776-25325153 (view UCSC Genome Browser custom track) |
Alignm length: | 626 |
Alignm identity: | 440 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 604, 0 |
Conread position: | 25-503 |
Cow position: | chrX:12627586-12628063 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 293 |
Alignm E-value: | 5e-23 |
Alignm gaps (pig, cow): | 80, 59 |
Conread position: | 32-418 |
Cow position: | chrX:29045840-29045454 (view UCSC Genome Browser custom track) |
Alignm length: | 388 |
Alignm identity: | 269 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 16, 25 |
Conread position: | 36-326 |
Cow position: | chrX:14181231-14180941 (view UCSC Genome Browser custom track) |
Alignm length: | 291 |
Alignm identity: | 182 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 36-586 |
Cow position: | chrX:12627513-12628062 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 344 |
Alignm E-value: | 6e-35 |
Alignm gaps (pig, cow): | 207, 148 |
Conread position: | 36-588 |
Cow position: | chrX:13826873-13826321 (view UCSC Genome Browser custom track) |
Alignm length: | 559 |
Alignm identity: | 337 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 53, 43 |
Conread position: | 42-409 |
Cow position: | chrX:14181309-14180942 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 231 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 52, 45 |
Conread position: | 43-587 |
Cow position: | chrX:14181560-14181016 (view UCSC Genome Browser custom track) |
Alignm length: | 549 |
Alignm identity: | 318 |
Alignm E-value: | 6e-25 |
Alignm gaps (pig, cow): | 134, 114 |
Conread position: | 60-439 |
Cow position: | chrX:13826597-13826219 (view UCSC Genome Browser custom track) |
Alignm length: | 381 |
Alignm identity: | 226 |
Alignm E-value: | 1e-21 |
Alignm gaps (pig, cow): | 327, 320 |
Conread position: | 69-502 |
Cow position: | chrX:13826924-13826491 (view UCSC Genome Browser custom track) |
Alignm length: | 438 |
Alignm identity: | 269 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 91, 106 |
Conread position: | 74-638 |
Cow position: | chrX:25309667-25310231 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 25, 17 |
Conread position: | 99-418 |
Cow position: | chrX:12627325-12627643 (view UCSC Genome Browser custom track) |
Alignm length: | 321 |
Alignm identity: | 202 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 65, 79 |
Conread position: | 119-503 |
Cow position: | chrX:29045837-29045453 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 150-628 |
Cow position: | chrX:13826927-13826449 (view UCSC Genome Browser custom track) |
Alignm length: | 484 |
Alignm identity: | 292 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 106, 95 |
Conread position: | 151-649 |
Cow position: | chrX:25309660-25310156 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 25 |
Conread position: | 192-558 |
Cow position: | chrX:14181327-14180961 (view UCSC Genome Browser custom track) |
Alignm length: | 368 |
Alignm identity: | 221 |
Alignm E-value: | 6e-24 |
Alignm gaps (pig, cow): | 169, 156 |
Conread position: | 203-586 |
Cow position: | chrX:29045837-29045454 (view UCSC Genome Browser custom track) |
Alignm length: | 386 |
Alignm identity: | 264 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 76, 59 |
Conread position: | 212-633 |
Cow position: | chrX:13826949-13826528 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 259 |
Alignm E-value: | 5e-22 |
Alignm gaps (pig, cow): | 57, 52 |
Conread position: | 289-668 |
Cow position: | chrX:25325847-25325466 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 245 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 16, 9 |
Conread position: | 292-643 |
Cow position: | chrX:29045832-29045482 (view UCSC Genome Browser custom track) |
Alignm length: | 353 |
Alignm identity: | 234 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 59, 47 |
Show alignments to all cow chromosomes.