Cow genome map

Conread name: Ss1.1-ruio05_f13.5.5

Conread position: 1-708
Cow position: chrX:25325715-25325006 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 431

Conread position: 1-765
Cow position: chrX:25325547-25324780 (view UCSC Genome Browser custom track)
Alignm length: 771
Alignm identity: 535
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 174

Conread position: 2-617
Cow position: chrX:25324790-25324179 (view UCSC Genome Browser custom track)
Alignm length: 617
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 443

Conread position: 2-672
Cow position: chrX:29045618-29044967 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 245

Conread position: 2-702
Cow position: chrX:25325210-25324508 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 431

Conread position: 3-627
Cow position: chrX:25325041-25324417 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-644
Cow position: chrX:25325377-25324737 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 625, 0

Conread position: 3-708
Cow position: chrX:25325629-25324922 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 240

Conread position: 4-389
Cow position: chrX:29045049-29044663 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 0

Conread position: 4-555
Cow position: chrX:25310017-25310568 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 95

Conread position: 4-708
Cow position: chrX:25325124-25324418 (view UCSC Genome Browser custom track)
Alignm length: 707
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 639, 0

Conread position: 5-149
Cow position: chrX:29044796-29044652 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 5-232
Cow position: chrX:29044880-29044653 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 167
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 5-625
Cow position: chrX:25309934-25310554 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 346

Conread position: 5-627
Cow position: chrX:25324871-25324249 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-656
Cow position: chrX:25309766-25310415 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 419, 430

Conread position: 6-312
Cow position: chrX:29044963-29044657 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-560
Cow position: chrX:29045215-29044661 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 439, 427

Conread position: 6-627
Cow position: chrX:25325290-25324669 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-708
Cow position: chrX:25324953-25324250 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 83

Conread position: 9-674
Cow position: chrX:25309854-25310521 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 243

Conread position: 15-322
Cow position: chrX:25310280-25310586 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 300, 0

Conread position: 15-502
Cow position: chrX:13826726-13826239 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 286
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 85, 69

Conread position: 15-649
Cow position: chrX:29045773-29045162 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 310

Conread position: 18-639
Cow position: chrX:29045287-29044666 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 140

Conread position: 19-702
Cow position: chrX:29045367-29044685 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 36

Conread position: 23-474
Cow position: chrX:25310120-25310571 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 76

Conread position: 23-588
Cow position: chrX:12627333-12627896 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 356
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 57, 77

Conread position: 23-638
Cow position: chrX:25309700-25310315 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 34

Conread position: 24-649
Cow position: chrX:25325776-25325153 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 604, 0

Conread position: 25-503
Cow position: chrX:12627586-12628063 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 293
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 80, 59

Conread position: 32-418
Cow position: chrX:29045840-29045454 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 25

Conread position: 36-326
Cow position: chrX:14181231-14180941 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 182
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 36-586
Cow position: chrX:12627513-12628062 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 344
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 207, 148

Conread position: 36-588
Cow position: chrX:13826873-13826321 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 337
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 53, 43

Conread position: 42-409
Cow position: chrX:14181309-14180942 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 231
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 52, 45

Conread position: 43-587
Cow position: chrX:14181560-14181016 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 318
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 134, 114

Conread position: 60-439
Cow position: chrX:13826597-13826219 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 226
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 327, 320

Conread position: 69-502
Cow position: chrX:13826924-13826491 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 269
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 91, 106

Conread position: 74-638
Cow position: chrX:25309667-25310231 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 17

Conread position: 99-418
Cow position: chrX:12627325-12627643 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 202
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 65, 79

Conread position: 119-503
Cow position: chrX:29045837-29045453 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-628
Cow position: chrX:13826927-13826449 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 292
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 106, 95

Conread position: 151-649
Cow position: chrX:25309660-25310156 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 25

Conread position: 192-558
Cow position: chrX:14181327-14180961 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 221
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 169, 156

Conread position: 203-586
Cow position: chrX:29045837-29045454 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 59

Conread position: 212-633
Cow position: chrX:13826949-13826528 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 259
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 52

Conread position: 289-668
Cow position: chrX:25325847-25325466 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 245
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 16, 9

Conread position: 292-643
Cow position: chrX:29045832-29045482 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 59, 47

Show alignments to all cow chromosomes.