Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-ruio09_c16.5
        

               Conread position:
               178-688
               

               Cow position:
               chr1:90101516-90100998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               521
               

               Alignm identity:
               189
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               245, 474
               

               Conread position:
               377-745
               

               Cow position:
               chr1:21678621-21678978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               255
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               27, 16
               

               Conread position:
               381-754
               

               Cow position:
               chr1:85527462-85527080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               247
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               8, 309
               

               Conread position:
               394-762
               

               Cow position:
               chr1:92433503-92433871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 225
               

               Conread position:
               395-611
               

               Cow position:
               chr1:56644153-56643931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               19, 0
               

               Conread position:
               395-644
               

               Cow position:
               chr1:23973506-23973758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               169
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               395-871
               

               Cow position:
               chr1:17008996-17008513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               485
               

               Alignm identity:
               335
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 146
               

               Conread position:
               396-660
               

               Cow position:
               chr1:86020609-86020339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               190
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               20, 54
               

               Conread position:
               397-668
               

               Cow position:
               chr1:22778112-22777832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               107, 6
               

               Conread position:
               398-691
               

               Cow position:
               chr1:89547696-89548001 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               133, 275
               

               Conread position:
               401-669
               

               Cow position:
               chr1:57888806-57889067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               261, 19
               

               Conread position:
               408-860
               

               Cow position:
               chr1:64818392-64817938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               456
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               139, 129
               

               Conread position:
               411-823
               

               Cow position:
               chr1:87240182-87239769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 27
               

               Conread position:
               414-624
               

               Cow position:
               chr1:46940196-46940407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               414-640
               

               Cow position:
               chr1:12804454-12804680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               66, 126
               

               Conread position:
               414-649
               

               Cow position:
               chr1:55146044-55146283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               184
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               114, 144
               

               Conread position:
               414-752
               

               Cow position:
               chr1:73225472-73225824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               223
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               51, 44
               

               Conread position:
               414-820
               

               Cow position:
               chr1:9438041-9437642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 50
               

               Conread position:
               414-823
               

               Cow position:
               chr1:77177357-77176945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 124
               

               Conread position:
               414-837
               

               Cow position:
               chr1:58419428-58419861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 127
               

               Conread position:
               414-859
               

               Cow position:
               chr1:71822416-71821970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 349
               

               Conread position:
               414-860
               

               Cow position:
               chr1:44164580-44165029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 88
               

               Conread position:
               414-860
               

               Cow position:
               chr1:68282301-68282748 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               338
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               248, 54
               

               Conread position:
               415-532
               

               Cow position:
               chr1:99866141-99866257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               94
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               415-587
               

               Cow position:
               chr1:85358643-85358821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               127
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               415-644
               

               Cow position:
               chr1:76699976-76699739 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               169
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               94, 67
               

               Conread position:
               415-646
               

               Cow position:
               chr1:95050642-95050406 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               415-647
               

               Cow position:
               chr1:53041197-53040963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               167
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               100, 53
               

               Conread position:
               415-647
               

               Cow position:
               chr1:57969572-57969334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               120, 0
               

               Conread position:
               415-647
               

               Cow position:
               chr1:85529660-85529423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               118, 72
               

               Conread position:
               415-649
               

               Cow position:
               chr1:56669551-56669312 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               108, 197
               

               Conread position:
               415-654
               

               Cow position:
               chr1:92196739-92196974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               175
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               415-657
               

               Cow position:
               chr1:70534463-70534217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               114, 228
               

               Conread position:
               415-660
               

               Cow position:
               chr1:10881290-10881528 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               192
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               135, 38
               

               Conread position:
               415-661
               

               Cow position:
               chr1:82338309-82338060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               188
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               114, 68
               

               Conread position:
               415-667
               

               Cow position:
               chr1:15333418-15333666 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               234, 42
               

               Conread position:
               415-668
               

               Cow position:
               chr1:86578496-86578749 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 205
               

               Conread position:
               415-669
               

               Cow position:
               chr1:79419559-79419300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               66, 19
               

               Conread position:
               415-681
               

               Cow position:
               chr1:24446219-24445955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 67
               

               Conread position:
               415-688
               

               Cow position:
               chr1:20045978-20046255 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               46, 39
               

               Conread position:
               415-688
               

               Cow position:
               chr1:82656365-82656625 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               132, 102
               

               Conread position:
               415-695
               

               Cow position:
               chr1:90621992-90621707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               205
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               415-696
               

               Cow position:
               chr1:97221289-97221569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               182
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               120, 103
               

               Conread position:
               415-745
               

               Cow position:
               chr1:23191182-23191523 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               228
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               126, 211
               

               Conread position:
               415-745
               

               Cow position:
               chr1:80130381-80130712 (view UCSC Genome Browser custom track)
               

               Alignm length:
               333
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-751
               

               Cow position:
               chr1:22637888-22637554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 214
               

               Conread position:
               415-754
               

               Cow position:
               chr1:71020995-71020653 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               112, 71
               

               Conread position:
               415-754
               

               Cow position:
               chr1:74928383-74928715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               216
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               183, 102
               

               Conread position:
               415-754
               

               Cow position:
               chr1:89405159-89405502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               108, 23
               

               Conread position:
               415-758
               

               Cow position:
               chr1:3012053-3011710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               246, 53
               

               Conread position:
               415-758
               

               Cow position:
               chr1:22516047-22516396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               45, 201
               

               Conread position:
               415-766
               

               Cow position:
               chr1:23362121-23362488 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               235
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               15, 0
               

               Conread position:
               415-777
               

               Cow position:
               chr1:7790046-7789686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               245
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               114, 133
               

               Conread position:
               415-799
               

               Cow position:
               chr1:50657012-50656622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 59
               

               Conread position:
               415-801
               

               Cow position:
               chr1:53208194-53207805 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 69
               

               Conread position:
               415-806
               

               Cow position:
               chr1:46694151-46693760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 289
               

               Conread position:
               415-806
               

               Cow position:
               chr1:51980731-51981124 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               415-806
               

               Cow position:
               chr1:71666670-71666281 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               291
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 59
               

               Conread position:
               415-806
               

               Cow position:
               chr1:99690660-99691048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               267
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               101, 191
               

               Conread position:
               415-807
               

               Cow position:
               chr1:7583231-7583617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               267
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               86, 30
               

               Conread position:
               415-807
               

               Cow position:
               chr1:31814931-31815327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               270
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               114, 24
               

               Conread position:
               415-807
               

               Cow position:
               chr1:53370365-53370763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               251
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               110, 171
               

               Conread position:
               415-810
               

               Cow position:
               chr1:47634937-47634540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               247, 0
               

               Conread position:
               415-813
               

               Cow position:
               chr1:42874436-42874048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 52
               

               Conread position:
               415-813
               

               Cow position:
               chr1:77620051-77620451 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 124
               

               Conread position:
               415-817
               

               Cow position:
               chr1:61661806-61661403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               280
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               29, 21
               

               Conread position:
               415-830
               

               Cow position:
               chr1:76419621-76420038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-836
               

               Cow position:
               chr1:26606709-26606286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 22
               

               Conread position:
               415-836
               

               Cow position:
               chr1:61070518-61070931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               245, 158
               

               Conread position:
               415-836
               

               Cow position:
               chr1:63340707-63340285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-836
               

               Cow position:
               chr1:90235445-90235030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 226
               

               Conread position:
               415-851
               

               Cow position:
               chr1:38382375-38381940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 162
               

               Conread position:
               415-851
               

               Cow position:
               chr1:74821955-74822393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 232
               

               Conread position:
               415-854
               

               Cow position:
               chr1:26514844-26514409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 44
               

               Conread position:
               415-854
               

               Cow position:
               chr1:30372657-30373094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 278
               

               Conread position:
               415-854
               

               Cow position:
               chr1:70380649-70380205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 98
               

               Conread position:
               415-854
               

               Cow position:
               chr1:90605078-90604638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 92
               

               Conread position:
               415-854
               

               Cow position:
               chr1:99837581-99837143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 278
               

               Conread position:
               415-860
               

               Cow position:
               chr1:36874523-36874960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 222
               

               Conread position:
               415-860
               

               Cow position:
               chr1:39069466-39069008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               468
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 359
               

               Conread position:
               415-860
               

               Cow position:
               chr1:84240411-84240839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 217
               

               Conread position:
               415-860
               

               Cow position:
               chr1:85795713-85796160 (view UCSC Genome Browser custom track)
               

               Alignm length:
               449
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-860
               

               Cow position:
               chr1:90392993-90392544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-862
               

               Cow position:
               chr1:99398382-99398830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 113
               

               Conread position:
               415-864
               

               Cow position:
               chr1:20098852-20099319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               314
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               67, 173
               

               Conread position:
               415-867
               

               Cow position:
               chr1:72624616-72625074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 122
               

               Conread position:
               415-875
               

               Cow position:
               chr1:73433365-73432901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               466
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 111
               

               Conread position:
               416-657
               

               Cow position:
               chr1:36234837-36234594 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               177
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               109, 15
               

               Conread position:
               416-659
               

               Cow position:
               chr1:51844156-51843908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               181
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               110, 11
               

               Conread position:
               416-732
               

               Cow position:
               chr1:60280596-60280915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 145
               

               Conread position:
               416-754
               

               Cow position:
               chr1:20399038-20399371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               116, 84
               

               Conread position:
               416-759
               

               Cow position:
               chr1:90392197-90391842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               232
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               65, 272
               

               Conread position:
               416-766
               

               Cow position:
               chr1:49201523-49201878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               235
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               110, 15
               

               Conread position:
               416-860
               

               Cow position:
               chr1:53494961-53495415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               459
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 60
               

               Conread position:
               416-860
               

               Cow position:
               chr1:99136923-99136484 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               246, 82
               

               Conread position:
               417-762
               

               Cow position:
               chr1:53920977-53921347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               60, 0
               

               Conread position:
               417-793
               

               Cow position:
               chr1:3020989-3020591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               267
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               112, 152
               

               Conread position:
               418-624
               

               Cow position:
               chr1:33987038-33986829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               107, 157
               

               Conread position:
               418-647
               

               Cow position:
               chr1:7970959-7971186 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               105, 91
               

               Conread position:
               418-669
               

               Cow position:
               chr1:77530332-77530580 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 94
               

               Conread position:
               418-762
               

               Cow position:
               chr1:63036721-63037070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               244
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               106, 31
               

               Conread position:
               418-770
               

               Cow position:
               chr1:93413090-93412736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               248
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               105, 9
               

               Conread position:
               418-770
               

               Cow position:
               chr1:93795068-93795424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               246
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               111, 18
               

               Conread position:
               418-805
               

               Cow position:
               chr1:44678614-44679004 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               259
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               111, 270
               

               Conread position:
               418-836
               

               Cow position:
               chr1:11226737-11226317 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 121
               

               Conread position:
               419-566
               

               Cow position:
               chr1:68845946-68845799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               120
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               127, 119
               

               Conread position:
               419-567
               

               Cow position:
               chr1:83080883-83081030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               149
               

               Alignm identity:
               115
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               419-598
               

               Cow position:
               chr1:62967273-62967094 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-602
               

               Cow position:
               chr1:52160739-52160923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               139
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               106, 120
               

               Conread position:
               419-619
               

               Cow position:
               chr1:86073201-86073401 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               419-620
               

               Cow position:
               chr1:77100389-77100185 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               419-627
               

               Cow position:
               chr1:1349054-1348847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               163
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               139, 0
               

               Conread position:
               419-641
               

               Cow position:
               chr1:56408082-56408300 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               134, 61
               

               Conread position:
               419-646
               

               Cow position:
               chr1:29901485-29901250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               180
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               419-652
               

               Cow position:
               chr1:61747650-61747418 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               419-653
               

               Cow position:
               chr1:2465167-2464929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               178
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               108, 198
               

               Conread position:
               419-660
               

               Cow position:
               chr1:20798591-20798830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               419-660
               

               Cow position:
               chr1:85163323-85163082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               419-661
               

               Cow position:
               chr1:19517663-19517425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               419-665
               

               Cow position:
               chr1:56476897-56477133 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               118, 49
               

               Conread position:
               419-669
               

               Cow position:
               chr1:4058285-4058032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               170
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               103, 39
               

               Conread position:
               419-669
               

               Cow position:
               chr1:66242296-66242049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               186
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               242, 64
               

               Conread position:
               419-669
               

               Cow position:
               chr1:71558980-71558729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-669
               

               Cow position:
               chr1:72284786-72284542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               191
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 0
               

               Conread position:
               419-672
               

               Cow position:
               chr1:92881104-92880858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               183
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               123, 184
               

               Conread position:
               419-693
               

               Cow position:
               chr1:99792298-99792571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 154
               

               Conread position:
               419-740
               

               Cow position:
               chr1:22227370-22227688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               106, 60
               

               Conread position:
               419-743
               

               Cow position:
               chr1:76020170-76019848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 60
               

               Conread position:
               419-744
               

               Cow position:
               chr1:39468416-39468089 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               233
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               105, 218
               

               Conread position:
               419-746
               

               Cow position:
               chr1:36528934-36529266 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               107, 126
               

               Conread position:
               419-746
               

               Cow position:
               chr1:64327067-64327395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               108, 70
               

               Conread position:
               419-752
               

               Cow position:
               chr1:70770168-70769843 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               216
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               109, 95
               

               Conread position:
               419-754
               

               Cow position:
               chr1:41827680-41828005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               146, 68
               

               Conread position:
               419-754
               

               Cow position:
               chr1:53458214-53458551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 193
               

               Conread position:
               419-758
               

               Cow position:
               chr1:89349495-89349826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 14
               

               Conread position:
               419-759
               

               Cow position:
               chr1:52593088-52592745 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 274
               

               Conread position:
               419-759
               

               Cow position:
               chr1:84170011-84170337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               345
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 64
               

               Conread position:
               419-761
               

               Cow position:
               chr1:3963130-3963470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 110
               

               Conread position:
               419-764
               

               Cow position:
               chr1:44824768-44825122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               55, 185
               

               Conread position:
               419-766
               

               Cow position:
               chr1:30098603-30098272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               236
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               419-769
               

               Cow position:
               chr1:3440732-3441083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-775
               

               Cow position:
               chr1:82880194-82880530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 41
               

               Conread position:
               419-793
               

               Cow position:
               chr1:80967845-80968218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               114, 61
               

               Conread position:
               419-799
               

               Cow position:
               chr1:64878985-64878607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               243
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               125, 96
               

               Conread position:
               419-800
               

               Cow position:
               chr1:101776184-101776555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               270
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               160, 72
               

               Conread position:
               419-801
               

               Cow position:
               chr1:37332761-37332379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               254
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               110, 293
               

               Conread position:
               419-801
               

               Cow position:
               chr1:81664731-81664345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               255
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               53, 34
               

               Conread position:
               419-804
               

               Cow position:
               chr1:8659157-8659542 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 110
               

               Conread position:
               419-804
               

               Cow position:
               chr1:68854701-68855061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               419-810
               

               Cow position:
               chr1:12607981-12607591 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-810
               

               Cow position:
               chr1:53650416-53650791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               393
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               359, 217
               

               Conread position:
               419-810
               

               Cow position:
               chr1:56619176-56618779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               281
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               229, 110
               

               Conread position:
               419-811
               

               Cow position:
               chr1:97206125-97206517 (view UCSC Genome Browser custom track)
               

               Alignm length:
               397
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 60
               

               Conread position:
               419-821
               

               Cow position:
               chr1:18224370-18223968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               220, 107
               

               Conread position:
               419-823
               

               Cow position:
               chr1:28517206-28516808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 121
               

               Conread position:
               419-823
               

               Cow position:
               chr1:51983113-51983494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 62
               

               Conread position:
               419-826
               

               Cow position:
               chr1:58439527-58439137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               409
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               396, 187
               

               Conread position:
               419-836
               

               Cow position:
               chr1:17937983-17937568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 121
               

               Conread position:
               419-836
               

               Cow position:
               chr1:31714941-31714522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-836
               

               Cow position:
               chr1:79843979-79844387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 30
               

               Conread position:
               419-836
               

               Cow position:
               chr1:89492471-89492054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               241, 273
               

               Conread position:
               419-837
               

               Cow position:
               chr1:40061954-40062376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               419-851
               

               Cow position:
               chr1:20385116-20384683 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               239, 344
               

               Conread position:
               419-852
               

               Cow position:
               chr1:100400680-100400257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 74
               

               Conread position:
               419-853
               

               Cow position:
               chr1:1981602-1981175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 206
               

               Conread position:
               419-853
               

               Cow position:
               chr1:85776692-85776256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 401
               

               Conread position:
               419-854
               

               Cow position:
               chr1:7686128-7685692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               243, 263
               

               Conread position:
               419-854
               

               Cow position:
               chr1:54207313-54206878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 207
               

               Conread position:
               419-854
               

               Cow position:
               chr1:68253100-68253532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 338
               

               Conread position:
               419-854
               

               Cow position:
               chr1:74939713-74940141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 120
               

               Conread position:
               419-854
               

               Cow position:
               chr1:95499992-95499553 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 269
               

               Conread position:
               419-858
               

               Cow position:
               chr1:21091030-21091470 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 90
               

               Conread position:
               419-858
               

               Cow position:
               chr1:84812441-84811999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               328
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 398
               

               Conread position:
               419-860
               

               Cow position:
               chr1:2170016-2169572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               334
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               130, 267
               

               Conread position:
               419-860
               

               Cow position:
               chr1:24236007-24235570 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 61
               

               Conread position:
               419-860
               

               Cow position:
               chr1:42887736-42887320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               445
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               209, 121
               

               Conread position:
               419-860
               

               Cow position:
               chr1:67009226-67008795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 183
               

               Conread position:
               419-860
               

               Cow position:
               chr1:67821708-67821264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               453
               

               Alignm identity:
               329
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 110
               

               Conread position:
               419-860
               

               Cow position:
               chr1:94227037-94226605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 8
               

               Conread position:
               419-862
               

               Cow position:
               chr1:89742502-89742048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               330
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 107
               

               Conread position:
               419-864
               

               Cow position:
               chr1:96136010-96136436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               451
               

               Alignm identity:
               295
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               39, 210
               

               Conread position:
               419-867
               

               Cow position:
               chr1:21420888-21420440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 118
               

               Conread position:
               419-869
               

               Cow position:
               chr1:41004856-41004407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               454
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               242, 119
               

               Conread position:
               420-649
               

               Cow position:
               chr1:56634382-56634617 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               178
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               105, 198
               

               Conread position:
               422-754
               

               Cow position:
               chr1:95637055-95637391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 26
               

               Conread position:
               422-758
               

               Cow position:
               chr1:83105593-83105935 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               217
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               136, 9
               

               Conread position:
               423-650
               

               Cow position:
               chr1:52054599-52054832 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               423-677
               

               Cow position:
               chr1:73555040-73555307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               423-688
               

               Cow position:
               chr1:6425917-6426187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               35, 19
               

               Conread position:
               423-742
               

               Cow position:
               chr1:71797382-71797067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               238, 115
               

               Conread position:
               423-805
               

               Cow position:
               chr1:32625012-32625393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 207
               

               Conread position:
               424-661
               

               Cow position:
               chr1:50260344-50260106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               424-669
               

               Cow position:
               chr1:50271327-50271080 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               34, 45
               

               Conread position:
               424-730
               

               Cow position:
               chr1:6334949-6334636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               214
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               110, 44
               

               Conread position:
               424-746
               

               Cow position:
               chr1:44195828-44195507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               214
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               98, 44
               

               Conread position:
               424-751
               

               Cow position:
               chr1:24020782-24020454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               16, 27
               

               Conread position:
               424-752
               

               Cow position:
               chr1:84252058-84251723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               338
               

               Alignm identity:
               226
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               102, 18
               

               Conread position:
               424-754
               

               Cow position:
               chr1:42175088-42175408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 90
               

               Conread position:
               424-754
               

               Cow position:
               chr1:81307997-81308329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               214
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               102, 177
               

               Conread position:
               424-766
               

               Cow position:
               chr1:54203988-54204332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               233
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               114, 61
               

               Conread position:
               424-776
               

               Cow position:
               chr1:52555039-52554692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               247
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               102, 26
               

               Conread position:
               424-785
               

               Cow position:
               chr1:20128609-20128246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               230
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               120, 84
               

               Conread position:
               424-807
               

               Cow position:
               chr1:62140886-62140497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 168
               

               Conread position:
               424-821
               

               Cow position:
               chr1:15036829-15037242 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               111, 281
               

               Conread position:
               424-837
               

               Cow position:
               chr1:53397498-53397915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 383
               

               Conread position:
               424-852
               

               Cow position:
               chr1:26930453-26930032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               292
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               424-852
               

               Cow position:
               chr1:26942835-26943246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               296
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               233, 81
               

               Conread position:
               424-853
               

               Cow position:
               chr1:83583434-83582995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               455
               

               Alignm identity:
               309
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               60, 120
               

               Conread position:
               424-860
               

               Cow position:
               chr1:44136930-44136519 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               385, 95
               

               Conread position:
               425-804
               

               Cow position:
               chr1:98791100-98791483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               105, 142
               

               Conread position:
               425-853
               

               Cow position:
               chr1:63596543-63596114 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 109
               

               Conread position:
               426-599
               

               Cow position:
               chr1:13411895-13412065 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               128
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               426-641
               

               Cow position:
               chr1:34915384-34915608 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               158
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               426-757
               

               Cow position:
               chr1:63447488-63447152 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               217
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               101, 19
               

               Conread position:
               427-759
               

               Cow position:
               chr1:57672155-57671822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               96, 103
               

               Conread position:
               429-533
               

               Cow position:
               chr1:53648057-53648162 (view UCSC Genome Browser custom track)
               

               Alignm length:
               106
               

               Alignm identity:
               86
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               429-533
               

               Cow position:
               chr1:55135282-55135386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               85
               

               Alignm E-value:
               3e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-533
               

               Cow position:
               chr1:76554939-76554835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               105
               

               Alignm identity:
               86
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-536
               

               Cow position:
               chr1:77461910-77462017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               87
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-567
               

               Cow position:
               chr1:22630139-22630277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               113
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               118, 108
               

               Conread position:
               429-567
               

               Cow position:
               chr1:100771447-100771302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               146
               

               Alignm identity:
               111
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               429-586
               

               Cow position:
               chr1:57854829-57854668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               124
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               429-611
               

               Cow position:
               chr1:16797324-16797142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               60, 39
               

               Conread position:
               429-611
               

               Cow position:
               chr1:88530217-88530026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               62, 39
               

               Conread position:
               429-613
               

               Cow position:
               chr1:71748523-71748339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               142
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-616
               

               Cow position:
               chr1:24221530-24221722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               429-619
               

               Cow position:
               chr1:83576369-83576161 (view UCSC Genome Browser custom track)
               

               Alignm length:
               209
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               136, 0
               

               Conread position:
               429-625
               

               Cow position:
               chr1:61240463-61240664 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               104, 20
               

               Conread position:
               429-625
               

               Cow position:
               chr1:76208243-76208044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               144
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               84, 162
               

               Conread position:
               429-629
               

               Cow position:
               chr1:29935825-29935626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               429-634
               

               Cow position:
               chr1:42316849-42316638 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               429-635
               

               Cow position:
               chr1:34397280-34397085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               148
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               429-635
               

               Cow position:
               chr1:101926634-101926844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               147
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               107, 144
               

               Conread position:
               429-638
               

               Cow position:
               chr1:3062211-3062006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               158
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               429-639
               

               Cow position:
               chr1:100759603-100759813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-640
               

               Cow position:
               chr1:53369492-53369700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               166
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               182, 125
               

               Conread position:
               429-641
               

               Cow position:
               chr1:21403864-21403647 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               100, 140
               

               Conread position:
               429-641
               

               Cow position:
               chr1:50931786-50931579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               163
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               106, 158
               

               Conread position:
               429-642
               

               Cow position:
               chr1:14981569-14981349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               44, 67
               

               Conread position:
               429-644
               

               Cow position:
               chr1:22388718-22388503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               106, 182
               

               Conread position:
               429-646
               

               Cow position:
               chr1:43448255-43448043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               170
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               127, 91
               

               Conread position:
               429-646
               

               Cow position:
               chr1:99210009-99209787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               223
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               429-647
               

               Cow position:
               chr1:33081544-33081316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               108, 0
               

               Conread position:
               429-647
               

               Cow position:
               chr1:81373927-81373703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               429-647
               

               Cow position:
               chr1:82370188-82370410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               94, 43
               

               Conread position:
               429-648
               

               Cow position:
               chr1:96193380-96193156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               429-649
               

               Cow position:
               chr1:22835895-22836115 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-649
               

               Cow position:
               chr1:79279039-79278811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               167
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               429-649
               

               Cow position:
               chr1:89510636-89510416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               172
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               429-649
               

               Cow position:
               chr1:97311865-97312086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               168
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               114, 0
               

               Conread position:
               429-650
               

               Cow position:
               chr1:10064542-10064315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               228
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               99, 0
               

               Conread position:
               429-650
               

               Cow position:
               chr1:91106960-91106736 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               153
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               100, 39
               

               Conread position:
               429-653
               

               Cow position:
               chr1:8515037-8515260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               167
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               429-653
               

               Cow position:
               chr1:27943796-27944031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               162
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               429-653
               

               Cow position:
               chr1:66684786-66684556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               170
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               429-654
               

               Cow position:
               chr1:3924311-3924087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               172
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               220, 87
               

               Conread position:
               429-654
               

               Cow position:
               chr1:14098266-14098490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               112, 24
               

               Conread position:
               429-654
               

               Cow position:
               chr1:25856182-25856410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               88, 136
               

               Conread position:
               429-654
               

               Cow position:
               chr1:32629920-32630138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               158
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               108, 39
               

               Conread position:
               429-654
               

               Cow position:
               chr1:52507842-52507618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               429-654
               

               Cow position:
               chr1:71081069-71080852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               45, 0
               

               Conread position:
               429-658
               

               Cow position:
               chr1:31646649-31646420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               185
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 72
               

               Conread position:
               429-660
               

               Cow position:
               chr1:27146141-27145922 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               169
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               226, 44
               

               Conread position:
               429-660
               

               Cow position:
               chr1:31253019-31252789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               112, 161
               

               Conread position:
               429-660
               

               Cow position:
               chr1:50344751-50344993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               173
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               91, 133
               

               Conread position:
               429-660
               

               Cow position:
               chr1:75744042-75744277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 134
               

               Conread position:
               429-660
               

               Cow position:
               chr1:101852820-101852588 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               171
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               101, 151
               

               Conread position:
               429-661
               

               Cow position:
               chr1:5771180-5770947 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               165
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               98, 46
               

               Conread position:
               429-661
               

               Cow position:
               chr1:7202028-7202264 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               51, 185
               

               Conread position:
               429-661
               

               Cow position:
               chr1:22616131-22615910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               429-661
               

               Cow position:
               chr1:45020989-45020760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               109, 0
               

               Conread position:
               429-661
               

               Cow position:
               chr1:58385025-58385263 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               172
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               61, 79
               

               Conread position:
               429-661
               

               Cow position:
               chr1:69678860-69678630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               173
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               429-661
               

               Cow position:
               chr1:72790653-72790890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               46, 197
               

               Conread position:
               429-661
               

               Cow position:
               chr1:100537160-100537390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               429-662
               

               Cow position:
               chr1:7630718-7630956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               163
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               101, 193
               

               Conread position:
               429-664
               

               Cow position:
               chr1:64020825-64021064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               43, 110
               

               Conread position:
               429-669
               

               Cow position:
               chr1:68798906-68798662 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               429-669
               

               Cow position:
               chr1:73197082-73196831 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               99, 221
               

               Conread position:
               429-669
               

               Cow position:
               chr1:89484879-89485113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               53, 39
               

               Conread position:
               429-669
               

               Cow position:
               chr1:100510354-100510592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               118, 21
               

               Conread position:
               429-672
               

               Cow position:
               chr1:43650133-43649909 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               181
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               38, 71
               

               Conread position:
               429-672
               

               Cow position:
               chr1:95071225-95071471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               154, 235
               

               Conread position:
               429-673
               

               Cow position:
               chr1:68827459-68827214 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               197
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 233
               

               Conread position:
               429-673
               

               Cow position:
               chr1:77589562-77589820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               175
               

               Alignm E-value:
               4e-24
               

               Alignm gaps (pig, cow):
               112, 0
               

               Conread position:
               429-685
               

               Cow position:
               chr1:83594257-83594000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 0
               

               Conread position:
               429-686
               

               Cow position:
               chr1:24581160-24581417 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               251, 231
               

               Conread position:
               429-686
               

               Cow position:
               chr1:38423215-38423495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               429-688
               

               Cow position:
               chr1:47791296-47791035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               207
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 112
               

               Conread position:
               429-688
               

               Cow position:
               chr1:96671100-96671346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 73
               

               Conread position:
               429-693
               

               Cow position:
               chr1:18282758-18283032 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               429-694
               

               Cow position:
               chr1:57908755-57909021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               196
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               116, 39
               

               Conread position:
               429-694
               

               Cow position:
               chr1:58195323-58195058 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-40
               

               Alignm gaps (pig, cow):
               112, 83
               

               Conread position:
               429-695
               

               Cow position:
               chr1:24561976-24561719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               204
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               46, 111
               

               Conread position:
               429-695
               

               Cow position:
               chr1:75249756-75250021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 39
               

               Conread position:
               429-696
               

               Cow position:
               chr1:43678009-43677733 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-23
               

               Alignm gaps (pig, cow):
               29, 36
               

               Conread position:
               429-707
               

               Cow position:
               chr1:42505859-42505571 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               93, 132
               

               Conread position:
               429-715
               

               Cow position:
               chr1:12419946-12419652 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               212
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               51, 81
               

               Conread position:
               429-719
               

               Cow position:
               chr1:37646754-37646462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 0
               

               Conread position:
               429-731
               

               Cow position:
               chr1:21955043-21954738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               216
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               139, 16
               

               Conread position:
               429-737
               

               Cow position:
               chr1:55586085-55585768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 191
               

               Conread position:
               429-744
               

               Cow position:
               chr1:30066150-30066475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               105, 0
               

               Conread position:
               429-745
               

               Cow position:
               chr1:100325216-100324890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               222, 107
               

               Conread position:
               429-745
               

               Cow position:
               chr1:100816062-100816377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 98
               

               Conread position:
               429-746
               

               Cow position:
               chr1:80296316-80296634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               217
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               132, 39
               

               Conread position:
               429-750
               

               Cow position:
               chr1:78184226-78184541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 244
               

               Conread position:
               429-751
               

               Cow position:
               chr1:3739519-3739839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 144
               

               Conread position:
               429-751
               

               Cow position:
               chr1:33537848-33538171 (view UCSC Genome Browser custom track)
               

               Alignm length:
               336
               

               Alignm identity:
               230
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               108, 211
               

               Conread position:
               429-751
               

               Cow position:
               chr1:57743480-57743159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               225
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               96, 189
               

               Conread position:
               429-752
               

               Cow position:
               chr1:29915932-29916253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 248
               

               Conread position:
               429-758
               

               Cow position:
               chr1:38418593-38418924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               61, 212
               

               Conread position:
               429-759
               

               Cow position:
               chr1:24571361-24571041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               252
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 111
               

               Conread position:
               429-759
               

               Cow position:
               chr1:30034070-30034395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 126
               

               Conread position:
               429-759
               

               Cow position:
               chr1:82378309-82378644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 226
               

               Conread position:
               429-762
               

               Cow position:
               chr1:57390842-57390501 (view UCSC Genome Browser custom track)
               

               Alignm length:
               346
               

               Alignm identity:
               239
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               97, 50
               

               Conread position:
               429-762
               

               Cow position:
               chr1:57541973-57541648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               236
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               93, 47
               

               Conread position:
               429-762
               

               Cow position:
               chr1:72104668-72104999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 26
               

               Conread position:
               429-763
               

               Cow position:
               chr1:102289676-102289343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 111
               

               Conread position:
               429-764
               

               Cow position:
               chr1:53781171-53781494 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               108, 28
               

               Conread position:
               429-767
               

               Cow position:
               chr1:27495017-27495353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               229, 188
               

               Conread position:
               429-770
               

               Cow position:
               chr1:54933707-54934055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 30
               

               Conread position:
               429-773
               

               Cow position:
               chr1:21131564-21131221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 39
               

               Conread position:
               429-773
               

               Cow position:
               chr1:44154792-44155128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 33
               

               Conread position:
               429-796
               

               Cow position:
               chr1:101792569-101792215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               234, 38
               

               Conread position:
               429-797
               

               Cow position:
               chr1:9111495-9111119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               264
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               69, 215
               

               Conread position:
               429-799
               

               Cow position:
               chr1:3323373-3323747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 128
               

               Conread position:
               429-800
               

               Cow position:
               chr1:28678805-28679179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               260
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               91, 52
               

               Conread position:
               429-800
               

               Cow position:
               chr1:72812935-72813298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 106
               

               Conread position:
               429-802
               

               Cow position:
               chr1:47831647-47832021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               245
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               101, 60
               

               Conread position:
               429-804
               

               Cow position:
               chr1:61006039-61005671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               429-805
               

               Cow position:
               chr1:13638144-13637781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 208
               

               Conread position:
               429-805
               

               Cow position:
               chr1:41736094-41735729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 90
               

               Conread position:
               429-806
               

               Cow position:
               chr1:14561439-14561051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               389
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               429-807
               

               Cow position:
               chr1:2599925-2599547 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               127, 80
               

               Conread position:
               429-807
               

               Cow position:
               chr1:6795430-6795036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               96, 246
               

               Conread position:
               429-807
               

               Cow position:
               chr1:11323982-11323593 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               254
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               94, 39
               

               Conread position:
               429-807
               

               Cow position:
               chr1:21577332-21577702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 135
               

               Conread position:
               429-807
               

               Cow position:
               chr1:25119513-25119128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               265
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               63, 39
               

               Conread position:
               429-807
               

               Cow position:
               chr1:30041247-30041620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 61
               

               Conread position:
               429-807
               

               Cow position:
               chr1:40497095-40497473 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               96, 23
               

               Conread position:
               429-807
               

               Cow position:
               chr1:91450031-91450412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               260
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               96, 136
               

               Conread position:
               429-807
               

               Cow position:
               chr1:97622690-97622306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               265
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               21, 279
               

               Conread position:
               429-808
               

               Cow position:
               chr1:83496-83872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 272
               

               Conread position:
               429-808
               

               Cow position:
               chr1:5162547-5162156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               396
               

               Alignm identity:
               269
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               97, 26
               

               Conread position:
               429-808
               

               Cow position:
               chr1:55020000-55020374 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               45, 137
               

               Conread position:
               429-808
               

               Cow position:
               chr1:57957339-57956963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 101
               

               Conread position:
               429-808
               

               Cow position:
               chr1:89840789-89841159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               244
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               429-809
               

               Cow position:
               chr1:1743783-1743393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 226
               

               Conread position:
               429-809
               

               Cow position:
               chr1:52036932-52036546 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 20
               

               Conread position:
               429-809
               

               Cow position:
               chr1:52564260-52563900 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 144
               

               Conread position:
               429-813
               

               Cow position:
               chr1:99105369-99104985 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               141, 258
               

               Conread position:
               429-816
               

               Cow position:
               chr1:97100808-97100409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               278
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               69, 39
               

               Conread position:
               429-817
               

               Cow position:
               chr1:69289943-69290339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               274
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               97, 237
               

               Conread position:
               429-821
               

               Cow position:
               chr1:60119943-60120339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 124
               

               Conread position:
               429-821
               

               Cow position:
               chr1:67406162-67406551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               101, 189
               

               Conread position:
               429-829
               

               Cow position:
               chr1:65480732-65481134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 108
               

               Conread position:
               429-831
               

               Cow position:
               chr1:63049345-63049743 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 264
               

               Conread position:
               429-836
               

               Cow position:
               chr1:62507465-62507056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 107
               

               Conread position:
               429-837
               

               Cow position:
               chr1:15546993-15547394 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 39
               

               Conread position:
               429-837
               

               Cow position:
               chr1:55163445-55163845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 66
               

               Conread position:
               429-837
               

               Cow position:
               chr1:73756611-73757012 (view UCSC Genome Browser custom track)
               

               Alignm length:
               418
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 50
               

               Conread position:
               429-837
               

               Cow position:
               chr1:81859695-81859298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 39
               

               Conread position:
               429-837
               

               Cow position:
               chr1:89344430-89344835 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 74
               

               Conread position:
               429-838
               

               Cow position:
               chr1:71691333-71691742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               233, 375
               

               Conread position:
               429-838
               

               Cow position:
               chr1:85028482-85028883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 31
               

               Conread position:
               429-843
               

               Cow position:
               chr1:102010499-102010086 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 61
               

               Conread position:
               429-850
               

               Cow position:
               chr1:100450672-100450244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 74
               

               Conread position:
               429-851
               

               Cow position:
               chr1:3340441-3340879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 403
               

               Conread position:
               429-851
               

               Cow position:
               chr1:11854171-11853747 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 391
               

               Conread position:
               429-851
               

               Cow position:
               chr1:11914350-11913939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 20
               

               Conread position:
               429-851
               

               Cow position:
               chr1:97251215-97250792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               425
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 108
               

               Conread position:
               429-851
               

               Cow position:
               chr1:97761137-97761558 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 106
               

               Conread position:
               429-853
               

               Cow position:
               chr1:101634219-101634644 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 95
               

               Conread position:
               429-854
               

               Cow position:
               chr1:1403930-1403540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 65
               

               Conread position:
               429-854
               

               Cow position:
               chr1:31720007-31720433 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 173
               

               Conread position:
               429-854
               

               Cow position:
               chr1:41696580-41696999 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               378, 236
               

               Conread position:
               429-854
               

               Cow position:
               chr1:84255281-84255704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               212, 16
               

               Conread position:
               429-854
               

               Cow position:
               chr1:100887727-100887303 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               272, 111
               

               Conread position:
               429-854
               

               Cow position:
               chr1:101008084-101007679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 50
               

               Conread position:
               429-858
               

               Cow position:
               chr1:53308878-53308443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 87
               

               Conread position:
               429-858
               

               Cow position:
               chr1:57646199-57646620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               291
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               429-859
               

               Cow position:
               chr1:11873836-11873415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 131
               

               Conread position:
               429-859
               

               Cow position:
               chr1:37309997-37309567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 255
               

               Conread position:
               429-860
               

               Cow position:
               chr1:11728707-11729128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               290
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               113, 44
               

               Conread position:
               429-860
               

               Cow position:
               chr1:19145411-19144978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               450
               

               Alignm identity:
               300
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               93, 25
               

               Conread position:
               429-860
               

               Cow position:
               chr1:21572564-21573000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 16
               

               Conread position:
               429-860
               

               Cow position:
               chr1:21786837-21787277 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 396
               

               Conread position:
               429-860
               

               Cow position:
               chr1:22728567-22728998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 169
               

               Conread position:
               429-860
               

               Cow position:
               chr1:44769596-44769166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               36, 257
               

               Conread position:
               429-860
               

               Cow position:
               chr1:45289348-45288925 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               386, 82
               

               Conread position:
               429-860
               

               Cow position:
               chr1:54732921-54732521 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               39, 0
               

               Conread position:
               429-860
               

               Cow position:
               chr1:55357767-55357338 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 145
               

               Conread position:
               429-860
               

               Cow position:
               chr1:68951162-68951574 (view UCSC Genome Browser custom track)
               

               Alignm length:
               433
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               386, 214
               

               Conread position:
               429-860
               

               Cow position:
               chr1:78795222-78794795 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               237, 39
               

               Conread position:
               429-860
               

               Cow position:
               chr1:92962903-92963342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 40
               

               Conread position:
               429-860
               

               Cow position:
               chr1:96184488-96184071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               223, 53
               

               Conread position:
               429-860
               

               Cow position:
               chr1:100421364-100421779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               435
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 108
               

               Conread position:
               429-861
               

               Cow position:
               chr1:874158-874598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               443
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 304
               

               Conread position:
               429-861
               

               Cow position:
               chr1:81180462-81180026 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               213, 73
               

               Conread position:
               429-861
               

               Cow position:
               chr1:92370842-92370412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 165
               

               Conread position:
               429-862
               

               Cow position:
               chr1:43353130-43352710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               321
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 249
               

               Conread position:
               429-862
               

               Cow position:
               chr1:53373966-53374379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 73
               

               Conread position:
               429-862
               

               Cow position:
               chr1:54199860-54199434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               437
               

               Alignm identity:
               332
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 50
               

               Conread position:
               429-862
               

               Cow position:
               chr1:82861305-82861729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               325
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 67
               

               Conread position:
               429-862
               

               Cow position:
               chr1:96963847-96964268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               439
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 47
               

               Conread position:
               429-865
               

               Cow position:
               chr1:12871504-12871056 (view UCSC Genome Browser custom track)
               

               Alignm length:
               458
               

               Alignm identity:
               302
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               103, 139
               

               Conread position:
               429-880
               

               Cow position:
               chr1:57087728-57087276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               460
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 109
               

               Conread position:
               430-619
               

               Cow position:
               chr1:98789631-98789824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               104, 187
               

               Conread position:
               430-649
               

               Cow position:
               chr1:56748087-56748305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               162
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               24, 0
               

               Conread position:
               430-654
               

               Cow position:
               chr1:102775394-102775163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               161
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               430-659
               

               Cow position:
               chr1:6158231-6158462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               157
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               51, 24
               

               Conread position:
               430-661
               

               Cow position:
               chr1:52955740-52955967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               179
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               129, 0
               

               Conread position:
               430-669
               

               Cow position:
               chr1:93526931-93527165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               185
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               129, 90
               

               Conread position:
               430-745
               

               Cow position:
               chr1:51967998-51968306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               232, 38
               

               Conread position:
               430-745
               

               Cow position:
               chr1:66363574-66363881 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               227
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               104, 226
               

               Conread position:
               430-754
               

               Cow position:
               chr1:31756454-31756775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               218
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               123, 99
               

               Conread position:
               430-805
               

               Cow position:
               chr1:101130223-101129842 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               257
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               47, 133
               

               Conread position:
               430-806
               

               Cow position:
               chr1:39112486-39112841 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               110, 84
               

               Conread position:
               430-806
               

               Cow position:
               chr1:68097375-68096998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 107
               

               Conread position:
               430-807
               

               Cow position:
               chr1:70933839-70933489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               258
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               430-808
               

               Cow position:
               chr1:31190583-31190213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 146
               

               Conread position:
               430-808
               

               Cow position:
               chr1:46821530-46821905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 57
               

               Conread position:
               430-808
               

               Cow position:
               chr1:51376423-51376005 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               295
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               70, 99
               

               Conread position:
               430-836
               

               Cow position:
               chr1:55292862-55292454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               300
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 107
               

               Conread position:
               430-838
               

               Cow position:
               chr1:64678229-64678626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               377, 176
               

               Conread position:
               430-858
               

               Cow position:
               chr1:55203122-55202673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               457
               

               Alignm identity:
               305
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               33, 270
               

               Conread position:
               430-860
               

               Cow position:
               chr1:15311386-15311816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               118, 269
               

               Conread position:
               430-860
               

               Cow position:
               chr1:69941444-69941020 (view UCSC Genome Browser custom track)
               

               Alignm length:
               436
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 86
               

               Conread position:
               430-860
               

               Cow position:
               chr1:72012286-72011862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               440
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 159
               

               Conread position:
               430-862
               

               Cow position:
               chr1:68783138-68782693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               452
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 10
               

               Conread position:
               430-867
               

               Cow position:
               chr1:21538984-21539424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 107
               

               Conread position:
               430-868
               

               Cow position:
               chr1:31645848-31645408 (view UCSC Genome Browser custom track)
               

               Alignm length:
               444
               

               Alignm identity:
               315
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 107
               

               Conread position:
               430-868
               

               Cow position:
               chr1:53424707-53425132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 135
               

               Conread position:
               431-567
               

               Cow position:
               chr1:40089148-40089284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               105
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               431-582
               

               Cow position:
               chr1:12465250-12465100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               152
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               431-600
               

               Cow position:
               chr1:41056072-41056231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               431-636
               

               Cow position:
               chr1:21430523-21430314 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               74, 31
               

               Conread position:
               431-641
               

               Cow position:
               chr1:54117008-54117219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               155
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               92, 135
               

               Conread position:
               431-650
               

               Cow position:
               chr1:102424157-102424376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               169
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               431-661
               

               Cow position:
               chr1:61221200-61221438 (view UCSC Genome Browser custom track)
               

               Alignm length:
               243
               

               Alignm identity:
               180
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               105, 218
               

               Conread position:
               431-662
               

               Cow position:
               chr1:56129240-56129016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               431-668
               

               Cow position:
               chr1:44975264-44975504 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               87, 19
               

               Conread position:
               431-670
               

               Cow position:
               chr1:16273090-16272858 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               186
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 206
               

               Conread position:
               431-672
               

               Cow position:
               chr1:31964324-31964083 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               167
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               88, 100
               

               Conread position:
               431-677
               

               Cow position:
               chr1:100436427-100436673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               184
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               236, 177
               

               Conread position:
               431-722
               

               Cow position:
               chr1:3556984-3556697 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               212
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               431-727
               

               Cow position:
               chr1:4368564-4368267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 0
               

               Conread position:
               431-746
               

               Cow position:
               chr1:79646140-79645822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               213
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               111, 14
               

               Conread position:
               431-758
               

               Cow position:
               chr1:80184218-80183890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               184, 26
               

               Conread position:
               431-770
               

               Cow position:
               chr1:59019295-59019634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 98
               

               Conread position:
               431-801
               

               Cow position:
               chr1:73995212-73995581 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 37
               

               Conread position:
               431-805
               

               Cow position:
               chr1:6744603-6744238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               253
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               15, 58
               

               Conread position:
               431-807
               

               Cow position:
               chr1:65144956-65144567 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               104, 347
               

               Conread position:
               431-807
               

               Cow position:
               chr1:90297682-90298061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 189
               

               Conread position:
               431-837
               

               Cow position:
               chr1:81569514-81569107 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 41
               

               Conread position:
               431-850
               

               Cow position:
               chr1:31399710-31399288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 176
               

               Conread position:
               431-853
               

               Cow position:
               chr1:39100560-39101000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               235, 405
               

               Conread position:
               431-853
               

               Cow position:
               chr1:72462659-72463087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 261
               

               Conread position:
               431-854
               

               Cow position:
               chr1:23659148-23659562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 108
               

               Conread position:
               431-854
               

               Cow position:
               chr1:47653788-47653371 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               305
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               116, 109
               

               Conread position:
               431-854
               

               Cow position:
               chr1:98551242-98551657 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               231, 118
               

               Conread position:
               431-859
               

               Cow position:
               chr1:30441467-30441902 (view UCSC Genome Browser custom track)
               

               Alignm length:
               446
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 31
               

               Conread position:
               431-860
               

               Cow position:
               chr1:35598029-35597602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 106
               

               Conread position:
               433-567
               

               Cow position:
               chr1:732499-732365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               135
               

               Alignm identity:
               112
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               433-669
               

               Cow position:
               chr1:63042076-63041839 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 0
               

               Conread position:
               433-680
               

               Cow position:
               chr1:76095741-76095993 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               188
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               102, 220
               

               Conread position:
               433-754
               

               Cow position:
               chr1:61679658-61679349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               148, 87
               

               Conread position:
               433-770
               

               Cow position:
               chr1:55273259-55272929 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 90
               

               Conread position:
               433-802
               

               Cow position:
               chr1:96928733-96928372 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 66
               

               Conread position:
               433-808
               

               Cow position:
               chr1:32360624-32360246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               391
               

               Alignm identity:
               268
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               35, 199
               

               Conread position:
               433-854
               

               Cow position:
               chr1:77103325-77102905 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 26
               

               Conread position:
               434-579
               

               Cow position:
               chr1:78686523-78686669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               111
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               33, 105
               

               Conread position:
               434-602
               

               Cow position:
               chr1:55327455-55327285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-33
               

               Alignm gaps (pig, cow):
               12, 0
               

               Conread position:
               434-646
               

               Cow position:
               chr1:8828805-8829019 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               434-649
               

               Cow position:
               chr1:59248011-59247791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               166
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               89, 111
               

               Conread position:
               434-660
               

               Cow position:
               chr1:95765608-95765375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               434-688
               

               Cow position:
               chr1:56425697-56425950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               198
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 155
               

               Conread position:
               434-694
               

               Cow position:
               chr1:85960802-85960535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               103, 28
               

               Conread position:
               434-751
               

               Cow position:
               chr1:61591259-61590936 (view UCSC Genome Browser custom track)
               

               Alignm length:
               325
               

               Alignm identity:
               226
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               82, 209
               

               Conread position:
               434-754
               

               Cow position:
               chr1:28989177-28988847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               228
               

               Alignm E-value:
               5e-36
               

               Alignm gaps (pig, cow):
               99, 39
               

               Conread position:
               434-754
               

               Cow position:
               chr1:50988965-50989284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               229
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               70, 128
               

               Conread position:
               434-754
               

               Cow position:
               chr1:77762167-77762502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               222
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               62, 15
               

               Conread position:
               434-759
               

               Cow position:
               chr1:42053799-42053474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 122
               

               Conread position:
               434-801
               

               Cow position:
               chr1:79002432-79002073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 230
               

               Conread position:
               434-806
               

               Cow position:
               chr1:77648428-77648042 (view UCSC Genome Browser custom track)
               

               Alignm length:
               390
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               227, 34
               

               Conread position:
               434-808
               

               Cow position:
               chr1:73522618-73522245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               263
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               99, 177
               

               Conread position:
               434-823
               

               Cow position:
               chr1:35071106-35071496 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 103
               

               Conread position:
               434-830
               

               Cow position:
               chr1:99912483-99912085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 103
               

               Conread position:
               434-831
               

               Cow position:
               chr1:40122025-40122425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               217, 0
               

               Conread position:
               434-835
               

               Cow position:
               chr1:21506762-21506355 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 110
               

               Conread position:
               434-853
               

               Cow position:
               chr1:40310529-40310948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 199
               

               Conread position:
               434-854
               

               Cow position:
               chr1:32108607-32109029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               299
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 259
               

               Conread position:
               434-860
               

               Cow position:
               chr1:15743602-15744030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 387
               

               Conread position:
               434-860
               

               Cow position:
               chr1:60114554-60114982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 0
               

               Conread position:
               434-860
               

               Cow position:
               chr1:91733405-91733833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               430
               

               Alignm identity:
               308
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 103
               

               Conread position:
               434-868
               

               Cow position:
               chr1:28876880-28877318 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               322
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 103
               

               Conread position:
               434-869
               

               Cow position:
               chr1:95176459-95176894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               438
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 370
               

               Conread position:
               434-875
               

               Cow position:
               chr1:88624975-88625422 (view UCSC Genome Browser custom track)
               

               Alignm length:
               448
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               434-922
               

               Cow position:
               chr1:7712558-7713044 (view UCSC Genome Browser custom track)
               

               Alignm length:
               495
               

               Alignm identity:
               341
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               113, 103
               

               Conread position:
               435-640
               

               Cow position:
               chr1:63905966-63905767 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               435-696
               

               Cow position:
               chr1:36099404-36099665 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-22
               

               Alignm gaps (pig, cow):
               91, 52
               

               Conread position:
               435-738
               

               Cow position:
               chr1:55429458-55429155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               221, 196
               

               Conread position:
               435-740
               

               Cow position:
               chr1:57254850-57255156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               226, 0
               
UCSC Genome Browser
               Conread position:
               435-746
               

               Cow position:
               chr1:20527945-20528258 (view  custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 103
               
UCSC Genome Browser
               
               
               
Conread position: 435-758

               
               
               
Cow position: chr1:87456459-87456797 (view  custom track)

               
               
               
Alignm length: 343

               
               
               
Alignm identity: 223

               
               
               
Alignm E-value: 4e-23

               
               
               
Alignm gaps (pig, cow): 46, 143
UCSC Genome Browser
               
               
               
Conread position: 435-807

               
               
               
Cow position: chr1:88338216-88338593 (view  custom track)

               
               
               
Alignm length: 382

               
               
               
Alignm identity: 289

               
               
               
Alignm E-value: 0

               
               
               
Alignm gaps (pig, cow): 107, 16

               
               
               Conread position:436-535
               
               
               Cow position:chr1:54471627-54471528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-555
               
               
               Cow position:chr1:44126771-44126654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:436-560
               
               
               Cow position:chr1:48600899-48601022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):111, 13

               
               
               Conread position:436-562
               
               
               Cow position:chr1:15049659-15049785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-562
               
               
               Cow position:chr1:20848744-20848618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-562
               
               
               Cow position:chr1:50764919-50765045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:104
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-565
               
               
               Cow position:chr1:47543200-47543071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):74, 39

               
               
               Conread position:436-566
               
               
               Cow position:chr1:43225202-43225072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-567
               
               
               Cow position:chr1:44556878-44556747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-567
               
               
               Cow position:chr1:63046668-63046799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:108
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-567
               
               
               Cow position:chr1:70865030-70865161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):112, 102

               
               
               Conread position:436-576
               
               
               Cow position:chr1:40351642-40351782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-576
               
               
               Cow position:chr1:69503587-69503447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-581
               
               
               Cow position:chr1:81579422-81579279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:436-583
               
               
               Cow position:chr1:40436581-40436728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:119
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-583
               
               
               Cow position:chr1:57577114-57576966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):27, 102

               
               
               Conread position:436-583
               
               
               Cow position:chr1:58216814-58216666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:111
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:436-583
               
               
               Cow position:chr1:68480901-68480754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:118
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-588
               
               
               Cow position:chr1:18535133-18534981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:84
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-590
               
               
               Cow position:chr1:28811455-28811301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:116
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-591
               
               
               Cow position:chr1:26536399-26536244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-597
               
               
               Cow position:chr1:18699217-18699378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-597
               
               
               Cow position:chr1:99100630-99100469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-598
               
               
               Cow position:chr1:40680943-40680780 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:436-605
               
               
               Cow position:chr1:21994095-21993925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):163, 0

               
               
               Conread position:436-606
               
               
               Cow position:chr1:23099413-23099577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:436-611
               
               
               Cow position:chr1:31391268-31391089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):105, 0

               
               
               Conread position:436-612
               
               
               Cow position:chr1:26838705-26838880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:436-614
               
               
               Cow position:chr1:82061055-82061229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:436-616
               
               
               Cow position:chr1:21523534-21523715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:146
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):171, 0

               
               
               Conread position:436-619
               
               
               Cow position:chr1:12374517-12374334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:151
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-619
               
               
               Cow position:chr1:48345955-48346138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:436-622
               
               
               Cow position:chr1:10468003-10467815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:436-626
               
               
               Cow position:chr1:78558214-78558404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:154
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-628
               
               
               Cow position:chr1:99571808-99571620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):125, 138

               
               
               Conread position:436-629
               
               
               Cow position:chr1:69078449-69078256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:150
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:436-634
               
               
               Cow position:chr1:79165811-79165615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:436-641
               
               
               Cow position:chr1:24595350-24595548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:436-641
               
               
               Cow position:chr1:31638725-31638521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-650
               
               
               Cow position:chr1:64717109-64716895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):96, 158

               
               
               Conread position:436-650
               
               
               Cow position:chr1:93111130-93110913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 38

               
               
               Conread position:436-653
               
               
               Cow position:chr1:66835506-66835296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:436-654
               
               
               Cow position:chr1:3908874-3908656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-654
               
               
               Cow position:chr1:13797564-13797335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 32

               
               
               Conread position:436-654
               
               
               Cow position:chr1:76873664-76873884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:436-654
               
               
               Cow position:chr1:80421717-80421934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:165
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:436-656
               
               
               Cow position:chr1:69425804-69425582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:436-656
               
               
               Cow position:chr1:83170228-83170449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 102

               
               
               Conread position:436-657
               
               
               Cow position:chr1:25241075-25241294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 87

               
               
               Conread position:436-659
               
               
               Cow position:chr1:53564226-53564449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-660
               
               
               Cow position:chr1:15348271-15348495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-660
               
               
               Cow position:chr1:31662101-31662325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-660
               
               
               Cow position:chr1:53422975-53423201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:436-660
               
               
               Cow position:chr1:58167903-58167673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):70, 92

               
               
               Conread position:436-660
               
               
               Cow position:chr1:60554348-60554119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:436-660
               
               
               Cow position:chr1:85838621-85838854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:436-661
               
               
               Cow position:chr1:79255779-79256007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):94, 138

               
               
               Conread position:436-661
               
               
               Cow position:chr1:98612734-98612960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:436-663
               
               
               Cow position:chr1:22012178-22011948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):158, 0

               
               
               Conread position:436-664
               
               
               Cow position:chr1:22174143-22174372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-666
               
               
               Cow position:chr1:81363058-81363282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:183
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):31, 100

               
               
               Conread position:436-667
               
               
               Cow position:chr1:2752184-2752416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-667
               
               
               Cow position:chr1:35785565-35785796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 60

               
               
               Conread position:436-668
               
               
               Cow position:chr1:23886507-23886274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-669
               
               
               Cow position:chr1:4337544-4337777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 144

               
               
               Conread position:436-669
               
               
               Cow position:chr1:15386132-15385898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-669
               
               
               Cow position:chr1:16116612-16116378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-669
               
               
               Cow position:chr1:52979452-52979686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-669
               
               
               Cow position:chr1:68601843-68601612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):212, 0

               
               
               Conread position:436-672
               
               
               Cow position:chr1:5178337-5178099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:436-674
               
               
               Cow position:chr1:64613493-64613732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-675
               
               
               Cow position:chr1:28770117-28769877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-676
               
               
               Cow position:chr1:49773193-49772952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-677
               
               
               Cow position:chr1:51884388-51884630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 240

               
               
               Conread position:436-678
               
               
               Cow position:chr1:8643039-8643282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-679
               
               
               Cow position:chr1:10632276-10632504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:436-685
               
               
               Cow position:chr1:7747767-7748020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 229

               
               
               Conread position:436-685
               
               
               Cow position:chr1:7751933-7752186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:189
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):37, 229

               
               
               Conread position:436-687
               
               
               Cow position:chr1:39234720-39234467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:436-688
               
               
               Cow position:chr1:8345620-8345367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-688
               
               
               Cow position:chr1:9262283-9262535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 71

               
               
               Conread position:436-688
               
               
               Cow position:chr1:40766538-40766791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-688
               
               
               Cow position:chr1:56620008-56619755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-693
               
               
               Cow position:chr1:40479830-40479577 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):226, 114

               
               
               Conread position:436-693
               
               
               Cow position:chr1:82091681-82091936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):36, 100

               
               
               Conread position:436-693
               
               
               Cow position:chr1:86511689-86511945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 80

               
               
               Conread position:436-715
               
               
               Cow position:chr1:66145487-66145766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 80

               
               
               Conread position:436-718
               
               
               Cow position:chr1:97231507-97231784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 7

               
               
               Conread position:436-726
               
               
               Cow position:chr1:97778383-97778670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 43

               
               
               Conread position:436-727
               
               
               Cow position:chr1:6046040-6046328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 0

               
               
               Conread position:436-727
               
               
               Cow position:chr1:62928633-62928925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-727
               
               
               Cow position:chr1:71123852-71123560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-728
               
               
               Cow position:chr1:51910097-51909805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 152

               
               
               Conread position:436-732
               
               
               Cow position:chr1:42740809-42741105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-735
               
               
               Cow position:chr1:43144000-43144300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-738
               
               
               Cow position:chr1:65021328-65021630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-739
               
               
               Cow position:chr1:39479696-39479396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 32

               
               
               Conread position:436-748
               
               
               Cow position:chr1:94464898-94465207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 37

               
               
               Conread position:436-751
               
               
               Cow position:chr1:80901708-80901384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:436-751
               
               
               Cow position:chr1:85142428-85142113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:226
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):23, 33

               
               
               Conread position:436-751
               
               
               Cow position:chr1:94879296-94878980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-754
               
               
               Cow position:chr1:15418049-15417730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-754
               
               
               Cow position:chr1:17707306-17707625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 29

               
               
               Conread position:436-754
               
               
               Cow position:chr1:22221331-22221015 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 123

               
               
               Conread position:436-754
               
               
               Cow position:chr1:72589577-72589258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-759
               
               
               Cow position:chr1:19465587-19465912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 46

               
               
               Conread position:436-759
               
               
               Cow position:chr1:68912282-68912601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):107, 76

               
               
               Conread position:436-762
               
               
               Cow position:chr1:65074163-65073831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:202
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 233

               
               
               Conread position:436-769
               
               
               Cow position:chr1:54639812-54640146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:20147200-20147539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:242
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:436-770
               
               
               Cow position:chr1:22685577-22685912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:31708392-31708727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:37110290-37109957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:53015592-53015927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:82479770-82480103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:84449412-84449746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-770
               
               
               Cow position:chr1:102743660-102743991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):241, 261

               
               
               Conread position:436-772
               
               
               Cow position:chr1:34363451-34363784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):226, 87

               
               
               Conread position:436-773
               
               
               Cow position:chr1:4218579-4218239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 60

               
               
               Conread position:436-773
               
               
               Cow position:chr1:19828208-19827868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-773
               
               
               Cow position:chr1:72087370-72087709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:436-773
               
               
               Cow position:chr1:91888461-91888123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-777
               
               
               Cow position:chr1:73017691-73017366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:241
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):87, 119

               
               
               Conread position:436-781
               
               
               Cow position:chr1:61204572-61204913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):144, 238

               
               
               Conread position:436-785
               
               
               Cow position:chr1:31350984-31350634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-795
               
               
               Cow position:chr1:26934994-26934655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:436-795
               
               
               Cow position:chr1:72987242-72987593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-796
               
               
               Cow position:chr1:46930167-46929806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-798
               
               
               Cow position:chr1:12283144-12283505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:436-799
               
               
               Cow position:chr1:77554216-77553851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-799
               
               
               Cow position:chr1:85866595-85866949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:255
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):97, 69

               
               
               Conread position:436-804
               
               
               Cow position:chr1:61493586-61493955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-805
               
               
               Cow position:chr1:51365893-51366264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-805
               
               
               Cow position:chr1:60342761-60343133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:436-806
               
               
               Cow position:chr1:56718841-56719214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 148

               
               
               Conread position:436-806
               
               
               Cow position:chr1:63240491-63240838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:260
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):225, 55

               
               
               Conread position:436-806
               
               
               Cow position:chr1:96637566-96637937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-807
               
               
               Cow position:chr1:3382128-3381755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-807
               
               
               Cow position:chr1:47454195-47453818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:269
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):100, 176

               
               
               Conread position:436-807
               
               
               Cow position:chr1:54295136-54294763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 32

               
               
               Conread position:436-807
               
               
               Cow position:chr1:58218883-58219265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):94, 278

               
               
               Conread position:436-807
               
               
               Cow position:chr1:66971385-66971013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 97

               
               
               Conread position:436-808
               
               
               Cow position:chr1:2318113-2317743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 185

               
               
               Conread position:436-808
               
               
               Cow position:chr1:82920354-82919987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 207

               
               
               Conread position:436-808
               
               
               Cow position:chr1:89084194-89084562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 33

               
               
               Conread position:436-809
               
               
               Cow position:chr1:23932073-23931683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:263
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):52, 265

               
               
               Conread position:436-810
               
               
               Cow position:chr1:475665-476041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:8402258-8402634 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:8744710-8744335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:16372835-16373211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:17247876-17247500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:17450641-17450265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:19235710-19235336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 145

               
               
               Conread position:436-810
               
               
               Cow position:chr1:20846226-20845849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 102

               
               
               Conread position:436-810
               
               
               Cow position:chr1:33464485-33464109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:33910151-33910527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 0

               
               
               Conread position:436-810
               
               
               Cow position:chr1:34820717-34821093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:34874762-34875138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:36706651-36706275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:37243916-37243540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-810
               
               
               Cow position:chr1:46122099-46121723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:47078395-47078019 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:47418232-47418608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:50687510-50687886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:52381231-52381605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:61331176-61330801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:436-810
               
               
               Cow position:chr1:62530339-62530715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:66368607-66368232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 37

               
               
               Conread position:436-810
               
               
               Cow position:chr1:67717546-67717170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:72963308-72962932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:74513356-74512980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:76486020-76485648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:76617702-76617340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):276, 165

               
               
               Conread position:436-810
               
               
               Cow position:chr1:76748608-76748232 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 322

               
               
               Conread position:436-810
               
               
               Cow position:chr1:76916855-76917231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:77841071-77841447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-810
               
               
               Cow position:chr1:83136721-83137097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 92

               
               
               Conread position:436-810
               
               
               Cow position:chr1:97075716-97075335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 252

               
               
               Conread position:436-811
               
               
               Cow position:chr1:10624478-10624854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-811
               
               
               Cow position:chr1:20832668-20833042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 18

               
               
               Conread position:436-811
               
               
               Cow position:chr1:27956758-27957129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 192

               
               
               Conread position:436-811
               
               
               Cow position:chr1:44094928-44094561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 172

               
               
               Conread position:436-811
               
               
               Cow position:chr1:56666887-56667263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-811
               
               
               Cow position:chr1:56720714-56720338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-811
               
               
               Cow position:chr1:69872717-69872341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-811
               
               
               Cow position:chr1:72806231-72805855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-811
               
               
               Cow position:chr1:89089750-89089374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-811
               
               
               Cow position:chr1:95457138-95457514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-814
               
               
               Cow position:chr1:62597436-62597057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:436-815
               
               
               Cow position:chr1:41093349-41092965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):47, 23

               
               
               Conread position:436-819
               
               
               Cow position:chr1:68821338-68820953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:831455-831070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:2990270-2990659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:13150329-13150716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:13439079-13439463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:436-823
               
               
               Cow position:chr1:17056252-17056641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:17058384-17057995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:21079653-21079264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:22546599-22546988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:26586008-26586397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:30312214-30312603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:39160885-39160496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:42714054-42713666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 80

               
               
               Conread position:436-823
               
               
               Cow position:chr1:68145184-68144797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:69513643-69513255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:70532870-70533258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-823
               
               
               Cow position:chr1:81321037-81321424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 117

               
               
               Conread position:436-823
               
               
               Cow position:chr1:84904730-84905116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-828
               
               
               Cow position:chr1:68609991-68609598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-828
               
               
               Cow position:chr1:72766249-72765859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-828
               
               
               Cow position:chr1:78234900-78234509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-828
               
               
               Cow position:chr1:91105825-91106217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-829
               
               
               Cow position:chr1:6657306-6656908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-829
               
               
               Cow position:chr1:69770602-69770997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-830
               
               
               Cow position:chr1:13451575-13451970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-830
               
               
               Cow position:chr1:34534028-34534424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-830
               
               
               Cow position:chr1:63760758-63760362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-830
               
               
               Cow position:chr1:65390348-65390744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 384

               
               
               Conread position:436-830
               
               
               Cow position:chr1:81309148-81309543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-831
               
               
               Cow position:chr1:10790628-10791027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 248

               
               
               Conread position:436-831
               
               
               Cow position:chr1:16839104-16839501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 384

               
               
               Conread position:436-831
               
               
               Cow position:chr1:25553589-25553996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-831
               
               
               Cow position:chr1:102552759-102553151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 245

               
               
               Conread position:436-835
               
               
               Cow position:chr1:32960419-32960018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:3931853-3931451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:4563277-4562880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 32

               
               
               Conread position:436-836
               
               
               Cow position:chr1:8513480-8513079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:8602191-8601790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-836
               
               
               Cow position:chr1:8845404-8845807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:436-836
               
               
               Cow position:chr1:9376592-9376192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 32

               
               
               Conread position:436-836
               
               
               Cow position:chr1:11665754-11665352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:13298321-13298722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:18961962-18961560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 286

               
               
               Conread position:436-836
               
               
               Cow position:chr1:19776311-19776724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:21376776-21376377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 323

               
               
               Conread position:436-836
               
               
               Cow position:chr1:23670006-23669607 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 245

               
               
               Conread position:436-836
               
               
               Cow position:chr1:25178218-25177816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 384

               
               
               Conread position:436-836
               
               
               Cow position:chr1:26588735-26589138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:26811288-26810872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 315

               
               
               Conread position:436-836
               
               
               Cow position:chr1:28714822-28715223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:31405538-31405940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:33365717-33366124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:44819018-44818618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:48735721-48736123 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:50670601-50671004 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 248

               
               
               Conread position:436-836
               
               
               Cow position:chr1:55137712-55137304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 391

               
               
               Conread position:436-836
               
               
               Cow position:chr1:57362546-57362144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):147, 214

               
               
               Conread position:436-836
               
               
               Cow position:chr1:58067179-58066779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 97

               
               
               Conread position:436-836
               
               
               Cow position:chr1:63583327-63582925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:65943433-65943042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 63

               
               
               Conread position:436-836
               
               
               Cow position:chr1:68052700-68052298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:70897530-70897932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:71774448-71774046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:73443097-73442693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 248

               
               
               Conread position:436-836
               
               
               Cow position:chr1:82162405-82162003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 246

               
               
               Conread position:436-836
               
               
               Cow position:chr1:84284490-84284892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:86372251-86371849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:87565036-87565438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:89234246-89233844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-836
               
               
               Cow position:chr1:89792769-89792367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-836
               
               
               Cow position:chr1:90913614-90914012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 78

               
               
               Conread position:436-836
               
               
               Cow position:chr1:91799459-91799064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 245

               
               
               Conread position:436-836
               
               
               Cow position:chr1:95592939-95592537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-837
               
               
               Cow position:chr1:31341529-31341125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 385

               
               
               Conread position:436-837
               
               
               Cow position:chr1:64907727-64908129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-844
               
               
               Cow position:chr1:49795529-49795935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:285
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:436-851
               
               
               Cow position:chr1:1383086-1382672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-851
               
               
               Cow position:chr1:4441574-4441165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 22

               
               
               Conread position:436-851
               
               
               Cow position:chr1:17457322-17457738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-851
               
               
               Cow position:chr1:32768136-32767720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-851
               
               
               Cow position:chr1:39890142-39890557 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 97

               
               
               Conread position:436-851
               
               
               Cow position:chr1:51732541-51732124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-852
               
               
               Cow position:chr1:60033076-60032659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):175, 265

               
               
               Conread position:436-852
               
               
               Cow position:chr1:68818286-68817860 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 18

               
               
               Conread position:436-853
               
               
               Cow position:chr1:64941761-64941357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):265, 220

               
               
               Conread position:436-853
               
               
               Cow position:chr1:88297996-88298411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 116

               
               
               Conread position:436-853
               
               
               Cow position:chr1:89185678-89185239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 404

               
               
               Conread position:436-854
               
               
               Cow position:chr1:3930333-3929917 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 318

               
               
               Conread position:436-854
               
               
               Cow position:chr1:9593628-9593214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 102

               
               
               Conread position:436-854
               
               
               Cow position:chr1:12057467-12057048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 13

               
               
               Conread position:436-854
               
               
               Cow position:chr1:13250761-13250341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 256

               
               
               Conread position:436-854
               
               
               Cow position:chr1:14240281-14239866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-854
               
               
               Cow position:chr1:18196382-18196802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 101

               
               
               Conread position:436-854
               
               
               Cow position:chr1:32562752-32562332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 384

               
               
               Conread position:436-854
               
               
               Cow position:chr1:36645665-36645247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-854
               
               
               Cow position:chr1:38479352-38479765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 101

               
               
               Conread position:436-854
               
               
               Cow position:chr1:40603812-40604230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 285

               
               
               Conread position:436-854
               
               
               Cow position:chr1:52171057-52170639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 9

               
               
               Conread position:436-854
               
               
               Cow position:chr1:52371940-52372356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-854
               
               
               Cow position:chr1:56140609-56140188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 246

               
               
               Conread position:436-854
               
               
               Cow position:chr1:57571619-57572039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 256

               
               
               Conread position:436-854
               
               
               Cow position:chr1:61341648-61341221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 261

               
               
               Conread position:436-854
               
               
               Cow position:chr1:63602001-63601599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 97

               
               
               Conread position:436-854
               
               
               Cow position:chr1:66491364-66491783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 64

               
               
               Conread position:436-854
               
               
               Cow position:chr1:69919912-69919501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 87

               
               
               Conread position:436-854
               
               
               Cow position:chr1:73062873-73062447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:436-854
               
               
               Cow position:chr1:74283537-74283118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 85

               
               
               Conread position:436-854
               
               
               Cow position:chr1:84556877-84556457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-854
               
               
               Cow position:chr1:99224226-99223802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 102

               
               
               Conread position:436-854
               
               
               Cow position:chr1:101973426-101973002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:436-855
               
               
               Cow position:chr1:39834826-39835260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 307

               
               
               Conread position:436-858
               
               
               Cow position:chr1:67188638-67188212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:436-859
               
               
               Cow position:chr1:57639974-57639576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 13

               
               
               Conread position:436-859
               
               
               Cow position:chr1:71795319-71795744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:3969499-3969073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:4026714-4027139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 201

               
               
               Conread position:436-860
               
               
               Cow position:chr1:4374806-4374392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 46

               
               
               Conread position:436-860
               
               
               Cow position:chr1:4589954-4589527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):211, 139

               
               
               Conread position:436-860
               
               
               Cow position:chr1:7416265-7416690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 43

               
               
               Conread position:436-860
               
               
               Cow position:chr1:9526352-9526777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:10071321-10070895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 384

               
               
               Conread position:436-860
               
               
               Cow position:chr1:13404598-13404175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 106

               
               
               Conread position:436-860
               
               
               Cow position:chr1:17032811-17032385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 102

               
               
               Conread position:436-860
               
               
               Cow position:chr1:21300536-21300962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:22295907-22295486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 76

               
               
               Conread position:436-860
               
               
               Cow position:chr1:26702671-26702260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 213

               
               
               Conread position:436-860
               
               
               Cow position:chr1:27309273-27308849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 235

               
               
               Conread position:436-860
               
               
               Cow position:chr1:29038327-29038756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 102

               
               
               Conread position:436-860
               
               
               Cow position:chr1:29429391-29429815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 104

               
               
               Conread position:436-860
               
               
               Cow position:chr1:31414452-31414014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:448
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 32

               
               
               Conread position:436-860
               
               
               Cow position:chr1:31535638-31536056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:32091888-32092309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:38688001-38688423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 256

               
               
               Conread position:436-860
               
               
               Cow position:chr1:47923081-47922655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:48731310-48730881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 229

               
               
               Conread position:436-860
               
               
               Cow position:chr1:56411827-56412251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 104

               
               
               Conread position:436-860
               
               
               Cow position:chr1:57421606-57421183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:426
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):367, 229

               
               
               Conread position:436-860
               
               
               Cow position:chr1:62223710-62224136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:67006660-67007093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:78807825-78808244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:78921222-78920797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 73

               
               
               Conread position:436-860
               
               
               Cow position:chr1:79334199-79333774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 71

               
               
               Conread position:436-860
               
               
               Cow position:chr1:84447468-84447894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:428
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:86597338-86597769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:436-860
               
               
               Cow position:chr1:91902806-91903235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-860
               
               
               Cow position:chr1:98534658-98534240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-861
               
               
               Cow position:chr1:62711403-62710974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 247

               
               
               Conread position:436-861
               
               
               Cow position:chr1:79590624-79591054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 424

               
               
               Conread position:436-861
               
               
               Cow position:chr1:85413069-85413487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 190

               
               
               Conread position:436-862
               
               
               Cow position:chr1:85361380-85361808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 408

               
               
               Conread position:436-862
               
               
               Cow position:chr1:88983622-88983199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:436-864
               
               
               Cow position:chr1:33547613-33547184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 256

               
               
               Conread position:436-866
               
               
               Cow position:chr1:7867559-7867992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-866
               
               
               Cow position:chr1:35147754-35147321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-866
               
               
               Cow position:chr1:40648339-40648773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 119

               
               
               Conread position:436-866
               
               
               Cow position:chr1:61724493-61724068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 30

               
               
               Conread position:436-867
               
               
               Cow position:chr1:1028154-1028588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:4014408-4013970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:7162032-7161599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:8470376-8469942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:19056655-19057087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:22483816-22483395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:26721541-26721107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:32795966-32796390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:49268667-49269101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:52068300-52068734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:56205027-56204593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:61281797-61282231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:75403681-75404116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 96

               
               
               Conread position:436-867
               
               
               Cow position:chr1:76207728-76207297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:76878817-76879252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 102

               
               
               Conread position:436-867
               
               
               Cow position:chr1:77748529-77748959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:77925268-77925702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:82482334-82481900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 0

               
               
               Conread position:436-867
               
               
               Cow position:chr1:83059855-83059422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 252

               
               
               Conread position:436-867
               
               
               Cow position:chr1:86497076-86497510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-867
               
               
               Cow position:chr1:89432190-89432625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:436-867
               
               
               Cow position:chr1:98353608-98353174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-868
               
               
               Cow position:chr1:14084859-14084423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 102

               
               
               Conread position:436-868
               
               
               Cow position:chr1:52378759-52379192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 98

               
               
               Conread position:436-871
               
               
               Cow position:chr1:18182318-18181883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-871
               
               
               Cow position:chr1:59201799-59201360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-871
               
               
               Cow position:chr1:85578071-85577632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-873
               
               
               Cow position:chr1:33855053-33855489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-878
               
               
               Cow position:chr1:102815259-102815706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-901
               
               
               Cow position:chr1:19157670-19157205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:162
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):111, 101

               
               
               Conread position:436-922
               
               
               Cow position:chr1:23920051-23920539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 104

               
               
               Conread position:436-922
               
               
               Cow position:chr1:91674018-91674505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:345
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 43

               
               
               Conread position:436-932
               
               
               Cow position:chr1:72808366-72808862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:497
               
               
               Alignm identity:86
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:437-567
               
               
               Cow position:chr1:427547-427421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:131
               
               
               Alignm identity:103
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:437-567
               
               
               Cow position:chr1:13578802-13578668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:437-601
               
               
               Cow position:chr1:78291345-78291508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:437-602
               
               
               Cow position:chr1:52754747-52754581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:437-619
               
               
               Cow position:chr1:33900327-33900514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:149
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):85, 105

               
               
               Conread position:437-643
               
               
               Cow position:chr1:102784309-102784514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:163
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:437-645
               
               
               Cow position:chr1:84786298-84786091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:166
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:437-645
               
               
               Cow position:chr1:86364248-86364463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:437-652
               
               
               Cow position:chr1:69963522-69963308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:171
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:437-653
               
               
               Cow position:chr1:2764917-2765134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:161
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):104, 134

               
               
               Conread position:437-655
               
               
               Cow position:chr1:38712501-38712723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:175
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-660
               
               
               Cow position:chr1:9015697-9015919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):177, 0

               
               
               Conread position:437-662
               
               
               Cow position:chr1:101834159-101834384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):11, 205

               
               
               Conread position:437-663
               
               
               Cow position:chr1:77657323-77657554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):97, 208

               
               
               Conread position:437-666
               
               
               Cow position:chr1:25282409-25282182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 31

               
               
               Conread position:437-668
               
               
               Cow position:chr1:86114287-86114519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:437-669
               
               
               Cow position:chr1:5813661-5813889 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 83

               
               
               Conread position:437-669
               
               
               Cow position:chr1:23117422-23117190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 116

               
               
               Conread position:437-686
               
               
               Cow position:chr1:60366477-60366731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):86, 177

               
               
               Conread position:437-694
               
               
               Cow position:chr1:43525353-43525088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:177
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):42, 15

               
               
               Conread position:437-695
               
               
               Cow position:chr1:57156140-57155874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:437-726
               
               
               Cow position:chr1:98618443-98618733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 103

               
               
               Conread position:437-746
               
               
               Cow position:chr1:40689235-40689555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:231
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):25, 20

               
               
               Conread position:437-746
               
               
               Cow position:chr1:49962286-49961978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):88, 20

               
               
               Conread position:437-756
               
               
               Cow position:chr1:53615646-53615327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):86, 44

               
               
               Conread position:437-758
               
               
               Cow position:chr1:27943087-27942769 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):36, 25

               
               
               Conread position:437-758
               
               
               Cow position:chr1:30672637-30672965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:437-769
               
               
               Cow position:chr1:52391075-52390742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-770
               
               
               Cow position:chr1:40530706-40530384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):104, 189

               
               
               Conread position:437-773
               
               
               Cow position:chr1:20950225-20950559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 177

               
               
               Conread position:437-773
               
               
               Cow position:chr1:86043891-86043548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:234
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):96, 90

               
               
               Conread position:437-799
               
               
               Cow position:chr1:21257824-21257465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 104

               
               
               Conread position:437-804
               
               
               Cow position:chr1:85865325-85865674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 98

               
               
               Conread position:437-807
               
               
               Cow position:chr1:74757191-74756789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:267
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:437-808
               
               
               Cow position:chr1:16973327-16972944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:267
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):34, 93

               
               
               Conread position:437-808
               
               
               Cow position:chr1:58340702-58341072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 62

               
               
               Conread position:437-810
               
               
               Cow position:chr1:39687054-39687430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 59

               
               
               Conread position:437-810
               
               
               Cow position:chr1:70068623-70068251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-813
               
               
               Cow position:chr1:67299316-67299682 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:251
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):98, 175

               
               
               Conread position:437-823
               
               
               Cow position:chr1:8517283-8516895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-829
               
               
               Cow position:chr1:19442365-19442761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 226

               
               
               Conread position:437-831
               
               
               Cow position:chr1:37660915-37660527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 31

               
               
               Conread position:437-831
               
               
               Cow position:chr1:63260711-63260330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 182

               
               
               Conread position:437-836
               
               
               Cow position:chr1:22229625-22230025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):216, 225

               
               
               Conread position:437-836
               
               
               Cow position:chr1:56190631-56190230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 121

               
               
               Conread position:437-836
               
               
               Cow position:chr1:57272364-57272765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 0

               
               
               Conread position:437-837
               
               
               Cow position:chr1:45006995-45007394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 156

               
               
               Conread position:437-838
               
               
               Cow position:chr1:23634368-23633980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 44

               
               
               Conread position:437-838
               
               
               Cow position:chr1:65907719-65907328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 182

               
               
               Conread position:437-850
               
               
               Cow position:chr1:33716748-33717165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 136

               
               
               Conread position:437-850
               
               
               Cow position:chr1:76223164-76222754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 325

               
               
               Conread position:437-851
               
               
               Cow position:chr1:52753648-52753225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:323
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 132

               
               
               Conread position:437-851
               
               
               Cow position:chr1:74762174-74761749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 106

               
               
               Conread position:437-852
               
               
               Cow position:chr1:52434810-52435211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 174

               
               
               Conread position:437-854
               
               
               Cow position:chr1:30531246-30530830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 103

               
               
               Conread position:437-854
               
               
               Cow position:chr1:52354886-52354469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 31

               
               
               Conread position:437-859
               
               
               Cow position:chr1:43893446-43893871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:434
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 258

               
               
               Conread position:437-860
               
               
               Cow position:chr1:4032171-4032575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:433
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 200

               
               
               Conread position:437-860
               
               
               Cow position:chr1:71045265-71045701 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:316
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 261

               
               
               Conread position:437-861
               
               
               Cow position:chr1:57305361-57305778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 101

               
               
               Conread position:437-862
               
               
               Cow position:chr1:665898-666313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:432
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 32

               
               
               Conread position:437-862
               
               
               Cow position:chr1:53613679-53613246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 68

               
               
               Conread position:437-863
               
               
               Cow position:chr1:21092619-21093041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:429
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 198

               
               
               Conread position:437-867
               
               
               Cow position:chr1:40058953-40059388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:322
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-867
               
               
               Cow position:chr1:62529996-62529563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:435
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-867
               
               
               Cow position:chr1:69997102-69997532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 100

               
               
               Conread position:437-869
               
               
               Cow position:chr1:64251541-64251095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:321
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 338

               
               
               Conread position:438-612
               
               
               Cow position:chr1:86505113-86504939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):50, 30

               
               
               Conread position:438-619
               
               
               Cow position:chr1:70064876-70065063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:139
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):88, 75

               
               
               Conread position:438-640
               
               
               Cow position:chr1:11020379-11020584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:438-660
               
               
               Cow position:chr1:21297749-21297976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):37, 55

               
               
               Conread position:438-661
               
               
               Cow position:chr1:54163313-54163084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):92, 118

               
               
               Conread position:438-688
               
               
               Cow position:chr1:37740035-37739778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):89, 78

               
               
               Conread position:438-688
               
               
               Cow position:chr1:87831033-87831283 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):97, 43

               
               
               Conread position:438-754
               
               
               Cow position:chr1:99628295-99627970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:438-759
               
               
               Cow position:chr1:56225001-56225325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 47

               
               
               Conread position:438-799
               
               
               Cow position:chr1:7197129-7197492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:438-801
               
               
               Cow position:chr1:42359803-42360159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 28

               
               
               Conread position:438-801
               
               
               Cow position:chr1:71676371-71676010 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 24

               
               
               Conread position:438-806
               
               
               Cow position:chr1:14528679-14528303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 30

               
               
               Conread position:438-806
               
               
               Cow position:chr1:73584893-73584510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 29

               
               
               Conread position:438-810
               
               
               Cow position:chr1:1023279-1022905 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:438-810
               
               
               Cow position:chr1:7324826-7325200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 99

               
               
               Conread position:438-811
               
               
               Cow position:chr1:67577605-67577966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 46

               
               
               Conread position:438-831
               
               
               Cow position:chr1:64061876-64062259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 49

               
               
               Conread position:438-836
               
               
               Cow position:chr1:16820395-16820795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 99

               
               
               Conread position:438-837
               
               
               Cow position:chr1:22629105-22628714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 129

               
               
               Conread position:438-849
               
               
               Cow position:chr1:10719950-10719545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:283
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):111, 36

               
               
               Conread position:438-852
               
               
               Cow position:chr1:22826695-22827106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:315
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 67

               
               
               Conread position:438-854
               
               
               Cow position:chr1:53312938-53313352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 148

               
               
               Conread position:438-860
               
               
               Cow position:chr1:67831345-67830920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:427
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 99

               
               
               Conread position:438-860
               
               
               Cow position:chr1:72069303-72068892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 160

               
               
               Conread position:438-870
               
               
               Cow position:chr1:101822968-101822542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 115

               
               
               Conread position:439-609
               
               
               Cow position:chr1:81925408-81925236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 60

               
               
               Conread position:439-672
               
               
               Cow position:chr1:1916973-1916738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:439-686
               
               
               Cow position:chr1:51892621-51892375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:164
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):177, 77

               
               
               Conread position:439-715
               
               
               Cow position:chr1:62755115-62755394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:190
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):88, 23

               
               
               Conread position:439-728
               
               
               Cow position:chr1:62776304-62776602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):77, 169

               
               
               Conread position:439-744
               
               
               Cow position:chr1:101787198-101786886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):102, 294

               
               
               Conread position:439-758
               
               
               Cow position:chr1:64462662-64462350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):223, 60

               
               
               Conread position:439-772
               
               
               Cow position:chr1:23534249-23534593 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 103

               
               
               Conread position:439-807
               
               
               Cow position:chr1:89355860-89356229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 34

               
               
               Conread position:439-808
               
               
               Cow position:chr1:17876459-17876095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 41

               
               
               Conread position:439-815
               
               
               Cow position:chr1:77168507-77168859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:255
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):369, 13

               
               
               Conread position:439-820
               
               
               Cow position:chr1:20377816-20377416 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):79, 29

               
               
               Conread position:439-821
               
               
               Cow position:chr1:82407034-82406643 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 320

               
               
               Conread position:439-843
               
               
               Cow position:chr1:68446270-68445872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:287
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):46, 179

               
               
               Conread position:439-854
               
               
               Cow position:chr1:101547511-101547092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:292
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 29

               
               
               Conread position:439-860
               
               
               Cow position:chr1:67290401-67290813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):369, 53

               
               
               Conread position:440-643
               
               
               Cow position:chr1:6040040-6039838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):21, 33

               
               
               Conread position:440-751
               
               
               Cow position:chr1:18663655-18663975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:440-758
               
               
               Cow position:chr1:58567068-58566755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):115, 79

               
               
               Conread position:440-811
               
               
               Cow position:chr1:46885622-46885996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 72

               
               
               Conread position:440-854
               
               
               Cow position:chr1:99642829-99642425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:419
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 115

               
               
               Conread position:440-860
               
               
               Cow position:chr1:39913486-39913058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:307
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):221, 42

               
               
               Conread position:441-632
               
               
               Cow position:chr1:50679719-50679528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):187, 48

               
               
               Conread position:441-676
               
               
               Cow position:chr1:22909681-22909928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:441-766
               
               
               Cow position:chr1:17690581-17690909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):85, 202

               
               
               Conread position:441-805
               
               
               Cow position:chr1:29380159-29379779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):94, 143

               
               
               Conread position:442-640
               
               
               Cow position:chr1:89729518-89729313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:442-649
               
               
               Cow position:chr1:3668284-3668064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:442-654
               
               
               Cow position:chr1:522806-523014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:164
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):164, 0

               
               
               Conread position:442-654
               
               
               Cow position:chr1:10519287-10519499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:175
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:442-654
               
               
               Cow position:chr1:74086021-74085812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 96

               
               
               Conread position:442-660
               
               
               Cow position:chr1:57982052-57981829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:442-661
               
               
               Cow position:chr1:31123360-31123134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 123

               
               
               Conread position:442-665
               
               
               Cow position:chr1:93536280-93536498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:176
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):218, 26

               
               
               Conread position:442-673
               
               
               Cow position:chr1:23370772-23370541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 85

               
               
               Conread position:442-688
               
               
               Cow position:chr1:42176265-42176022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):97, 26

               
               
               Conread position:442-688
               
               
               Cow position:chr1:61385379-61385627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 70

               
               
               Conread position:442-688
               
               
               Cow position:chr1:76860237-76859994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):87, 22

               
               
               Conread position:442-692
               
               
               Cow position:chr1:80655464-80655717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:442-704
               
               
               Cow position:chr1:74327857-74328122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 95

               
               
               Conread position:442-742
               
               
               Cow position:chr1:35241381-35241687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):84, 43

               
               
               Conread position:442-751
               
               
               Cow position:chr1:3790522-3790214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 141

               
               
               Conread position:442-754
               
               
               Cow position:chr1:66776469-66776778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:216
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):87, 23

               
               
               Conread position:442-758
               
               
               Cow position:chr1:28252158-28252469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:442-758
               
               
               Cow position:chr1:62263262-62262938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 21

               
               
               Conread position:442-762
               
               
               Cow position:chr1:97422767-97422443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:442-806
               
               
               Cow position:chr1:98493962-98494319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 78

               
               
               Conread position:442-807
               
               
               Cow position:chr1:77388575-77388203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:246
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):95, 26

               
               
               Conread position:442-808
               
               
               Cow position:chr1:44083598-44083964 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):95, 149

               
               
               Conread position:442-808
               
               
               Cow position:chr1:92048359-92048728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:442-809
               
               
               Cow position:chr1:42728466-42728086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:272
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):99, 35

               
               
               Conread position:442-817
               
               
               Cow position:chr1:3036841-3037217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 37

               
               
               Conread position:442-817
               
               
               Cow position:chr1:13056986-13056624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:270
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):89, 124

               
               
               Conread position:442-836
               
               
               Cow position:chr1:81779463-81779857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 96

               
               
               Conread position:442-837
               
               
               Cow position:chr1:35768975-35769373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 198

               
               
               Conread position:442-837
               
               
               Cow position:chr1:80336709-80336315 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 58

               
               
               Conread position:442-838
               
               
               Cow position:chr1:82937052-82936661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 317

               
               
               Conread position:442-844
               
               
               Cow position:chr1:85773996-85774391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 88

               
               
               Conread position:442-854
               
               
               Cow position:chr1:6462819-6462407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 340

               
               
               Conread position:442-854
               
               
               Cow position:chr1:12596377-12595963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 282

               
               
               Conread position:442-854
               
               
               Cow position:chr1:77553400-77552985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 379

               
               
               Conread position:442-854
               
               
               Cow position:chr1:95017989-95017578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 195

               
               
               Conread position:442-860
               
               
               Cow position:chr1:82909035-82908616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 96

               
               
               Conread position:442-862
               
               
               Cow position:chr1:20002724-20002291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:444
               
               
               Alignm identity:310
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):99, 182

               
               
               Conread position:443-672
               
               
               Cow position:chr1:97276814-97276583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):83, 140

               
               
               Conread position:443-675
               
               
               Cow position:chr1:82568488-82568719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:180
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 94

               
               
               Conread position:443-754
               
               
               Cow position:chr1:66871015-66870721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):143, 0

               
               
               Conread position:443-851
               
               
               Cow position:chr1:69670681-69670273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 135

               
               
               Conread position:443-860
               
               
               Cow position:chr1:2055336-2054925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 25

               
               
               Conread position:443-862
               
               
               Cow position:chr1:61725565-61725164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):219, 58

               
               
               Conread position:443-970
               
               
               Cow position:chr1:53578846-53579380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:536
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):218, 116

               
               
               Conread position:444-566
               
               
               Cow position:chr1:57096789-57096911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:95
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:444-640
               
               
               Cow position:chr1:102816758-102816958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:142
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):73, 181

               
               
               Conread position:444-646
               
               
               Cow position:chr1:19594545-19594349 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:444-651
               
               
               Cow position:chr1:33442404-33442198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):76, 16

               
               
               Conread position:444-682
               
               
               Cow position:chr1:40531785-40531542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 25

               
               
               Conread position:444-689
               
               
               Cow position:chr1:24412752-24412993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 18

               
               
               Conread position:444-741
               
               
               Cow position:chr1:9161115-9161411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):131, 85

               
               
               Conread position:444-770
               
               
               Cow position:chr1:15463891-15464230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):193, 30

               
               
               Conread position:444-770
               
               
               Cow position:chr1:54179207-54179533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 136

               
               
               Conread position:444-806
               
               
               Cow position:chr1:89937825-89937463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 167

               
               
               Conread position:444-859
               
               
               Cow position:chr1:34301034-34300604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:320
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 40

               
               
               Conread position:444-862
               
               
               Cow position:chr1:63391238-63390823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):217, 239

               
               
               Conread position:445-634
               
               
               Cow position:chr1:35154975-35154789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):99, 42

               
               
               Conread position:445-641
               
               
               Cow position:chr1:17477827-17478032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:445-653
               
               
               Cow position:chr1:59166928-59166713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:445-687
               
               
               Cow position:chr1:813444-813684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):110, 19

               
               
               Conread position:445-769
               
               
               Cow position:chr1:71978934-71979265 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:212
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):99, 304

               
               
               Conread position:445-792
               
               
               Cow position:chr1:35742552-35742201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:230
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):13, 20

               
               
               Conread position:445-813
               
               
               Cow position:chr1:92198312-92198670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:446-642
               
               
               Cow position:chr1:57265012-57264820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:446-643
               
               
               Cow position:chr1:10118902-10118706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):80, 9

               
               
               Conread position:446-648
               
               
               Cow position:chr1:71818970-71818763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):96, 43

               
               
               Conread position:446-750
               
               
               Cow position:chr1:70828445-70828751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):109, 92

               
               
               Conread position:446-808
               
               
               Cow position:chr1:57076838-57077203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):89, 205

               
               
               Conread position:446-818
               
               
               Cow position:chr1:75443895-75443513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:253
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):80, 153

               
               
               Conread position:446-846
               
               
               Cow position:chr1:98577015-98577409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 198

               
               
               Conread position:446-854
               
               
               Cow position:chr1:57525277-57524876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 22

               
               
               Conread position:447-605
               
               
               Cow position:chr1:5635505-5635666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:447-666
               
               
               Cow position:chr1:1459948-1459732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):157, 45

               
               
               Conread position:447-745
               
               
               Cow position:chr1:96018811-96019107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 27

               
               
               Conread position:447-770
               
               
               Cow position:chr1:18271930-18271604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):78, 21

               
               
               Conread position:447-808
               
               
               Cow position:chr1:8161064-8160702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:249
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):81, 167

               
               
               Conread position:447-860
               
               
               Cow position:chr1:86544166-86543751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 90

               
               
               Conread position:448-567
               
               
               Cow position:chr1:51789118-51788999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:448-652
               
               
               Cow position:chr1:16337064-16336863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):8, 34

               
               
               Conread position:449-563
               
               
               Cow position:chr1:37887223-37887109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:115
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:449-660
               
               
               Cow position:chr1:2070300-2070087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:449-673
               
               
               Cow position:chr1:9595261-9595037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:178
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 13

               
               
               Conread position:449-747
               
               
               Cow position:chr1:99262646-99262938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:215
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):213, 33

               
               
               Conread position:449-759
               
               
               Cow position:chr1:27341255-27341565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):77, 24

               
               
               Conread position:449-802
               
               
               Cow position:chr1:4278396-4278758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):76, 19

               
               
               Conread position:449-804
               
               
               Cow position:chr1:29462390-29462743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:255
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):208, 67

               
               
               Conread position:449-832
               
               
               Cow position:chr1:82958513-82958135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 47

               
               
               Conread position:449-836
               
               
               Cow position:chr1:33040606-33040991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 88

               
               
               Conread position:449-854
               
               
               Cow position:chr1:29671971-29671581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 119

               
               
               Conread position:449-854
               
               
               Cow position:chr1:89342449-89342054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):213, 129

               
               
               Conread position:449-862
               
               
               Cow position:chr1:96478223-96478645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:437
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:450-836
               
               
               Cow position:chr1:19357223-19357611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:450-867
               
               
               Cow position:chr1:79916880-79916458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 87

               
               
               Conread position:451-668
               
               
               Cow position:chr1:4384844-4385063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):88, 36

               
               
               Conread position:451-770
               
               
               Cow position:chr1:64669006-64668681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:451-809
               
               
               Cow position:chr1:16997862-16997503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):24, 58

               
               
               Conread position:451-838
               
               
               Cow position:chr1:31499162-31499553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 340

               
               
               Conread position:451-877
               
               
               Cow position:chr1:78586480-78586049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:436
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 90

               
               
               Conread position:451-927
               
               
               Cow position:chr1:67102981-67102505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:478
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):96, 86

               
               
               Conread position:452-590
               
               
               Cow position:chr1:93040436-93040301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:452-639
               
               
               Cow position:chr1:16589256-16589443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:138
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:452-644
               
               
               Cow position:chr1:52678680-52678867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):98, 83

               
               
               Conread position:452-669
               
               
               Cow position:chr1:32355273-32355056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 192

               
               
               Conread position:452-720
               
               
               Cow position:chr1:9512574-9512310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):89, 40

               
               
               Conread position:452-746
               
               
               Cow position:chr1:7836817-7836523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 92

               
               
               Conread position:452-762
               
               
               Cow position:chr1:44836688-44836377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):200, 85

               
               
               Conread position:452-864
               
               
               Cow position:chr1:43380475-43380073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 84

               
               
               Conread position:453-650
               
               
               Cow position:chr1:75966953-75967155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:453-688
               
               
               Cow position:chr1:37243132-37243368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):208, 0

               
               
               Conread position:453-713
               
               
               Cow position:chr1:42212203-42211938 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:178
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 20

               
               
               Conread position:453-810
               
               
               Cow position:chr1:10119758-10120117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 84

               
               
               Conread position:453-831
               
               
               Cow position:chr1:68717437-68717060 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 183

               
               
               Conread position:453-852
               
               
               Cow position:chr1:8532671-8532275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 15

               
               
               Conread position:453-853
               
               
               Cow position:chr1:2219408-2219007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):209, 229

               
               
               Conread position:453-854
               
               
               Cow position:chr1:5506308-5506708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):94, 84

               
               
               Conread position:453-858
               
               
               Cow position:chr1:61735899-61735487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:453-860
               
               
               Cow position:chr1:53520445-53520859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 212

               
               
               Conread position:454-669
               
               
               Cow position:chr1:67725368-67725150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 80

               
               
               Conread position:455-808
               
               
               Cow position:chr1:25781333-25781699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):68, 321

               
               
               Conread position:455-821
               
               
               Cow position:chr1:71938966-71938604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:248
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):20, 136

               
               
               Conread position:455-860
               
               
               Cow position:chr1:81356156-81355762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):207, 29

               
               
               Conread position:456-859
               
               
               Cow position:chr1:93499169-93499570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 133

               
               
               Conread position:456-860
               
               
               Cow position:chr1:98985377-98984969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 81

               
               
               Conread position:456-862
               
               
               Cow position:chr1:78091578-78091983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 302

               
               
               Conread position:457-762
               
               
               Cow position:chr1:100708145-100707841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):205, 39

               
               
               Conread position:457-773
               
               
               Cow position:chr1:41251128-41250809 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):72, 11

               
               
               Conread position:457-827
               
               
               Cow position:chr1:56228799-56229165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 307

               
               
               Conread position:457-854
               
               
               Cow position:chr1:57576215-57575818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 204

               
               
               Conread position:458-770
               
               
               Cow position:chr1:92075709-92076034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):70, 146

               
               
               Conread position:459-692
               
               
               Cow position:chr1:3376729-3376960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):72, 68

               
               
               Conread position:459-762
               
               
               Cow position:chr1:99808186-99807871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):59, 52

               
               
               Conread position:459-823
               
               
               Cow position:chr1:95213834-95213468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 78

               
               
               Conread position:462-649
               
               
               Cow position:chr1:57678263-57678076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:462-661
               
               
               Cow position:chr1:76470359-76470161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):123, 54

               
               
               Conread position:462-751
               
               
               Cow position:chr1:66356163-66355867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 226

               
               
               Conread position:462-770
               
               
               Cow position:chr1:44517221-44517531 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 75

               
               
               Conread position:462-836
               
               
               Cow position:chr1:72115165-72115533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):199, 171

               
               
               Conread position:462-847
               
               
               Cow position:chr1:1801696-1802074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 101

               
               
               Conread position:462-851
               
               
               Cow position:chr1:57759910-57760300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):85, 75

               
               
               Conread position:463-650
               
               
               Cow position:chr1:65394091-65394278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:463-652
               
               
               Cow position:chr1:28067685-28067873 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):79, 130

               
               
               Conread position:463-695
               
               
               Cow position:chr1:77114664-77114420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:463-786
               
               
               Cow position:chr1:35053043-35052719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):63, 162

               
               
               Conread position:463-831
               
               
               Cow position:chr1:100589246-100588887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:255
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):29, 78

               
               
               Conread position:464-806
               
               
               Cow position:chr1:52863471-52863125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):72, 183

               
               
               Conread position:465-723
               
               
               Cow position:chr1:67074732-67074476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):82, 14

               
               
               Conread position:465-853
               
               
               Cow position:chr1:89766717-89766340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):345, 9

               
               
               Conread position:465-877
               
               
               Cow position:chr1:59626880-59627287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:417
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 55

               
               
               Conread position:466-669
               
               
               Cow position:chr1:57660432-57660636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):194, 0

               
               
               Conread position:466-860
               
               
               Cow position:chr1:86113848-86113458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):195, 13

               
               
               Conread position:467-863
               
               
               Cow position:chr1:78783107-78783500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:403
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):194, 61

               
               
               Conread position:468-596
               
               
               Cow position:chr1:13762029-13761901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:468-643
               
               
               Cow position:chr1:48605733-48605906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:147
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:468-654
               
               
               Cow position:chr1:19883789-19883604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):144, 72

               
               
               Conread position:468-689
               
               
               Cow position:chr1:292568-292345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:468-751
               
               
               Cow position:chr1:82569223-82569504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:202
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):69, 26

               
               
               Conread position:468-753
               
               
               Cow position:chr1:95421993-95422282 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):6, 266

               
               
               Conread position:468-759
               
               
               Cow position:chr1:26896265-26895975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):80, 72

               
               
               Conread position:468-766
               
               
               Cow position:chr1:42171663-42171963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):61, 14

               
               
               Conread position:468-767
               
               
               Cow position:chr1:54988216-54987910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):71, 131

               
               
               Conread position:468-792
               
               
               Cow position:chr1:3709766-3709443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 78

               
               
               Conread position:468-808
               
               
               Cow position:chr1:88648410-88648058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):68, 55

               
               
               Conread position:468-808
               
               
               Cow position:chr1:89834803-89835125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 71

               
               
               Conread position:468-808
               
               
               Cow position:chr1:100132437-100132763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 141

               
               
               Conread position:468-831
               
               
               Cow position:chr1:86706000-86706362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 14

               
               
               Conread position:468-832
               
               
               Cow position:chr1:61350714-61351071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):335, 72

               
               
               Conread position:468-835
               
               
               Cow position:chr1:55260874-55260507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 216

               
               
               Conread position:468-836
               
               
               Cow position:chr1:57538168-57538538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:468-836
               
               
               Cow position:chr1:68279966-68280336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:468-836
               
               
               Cow position:chr1:97171140-97171510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:468-837
               
               
               Cow position:chr1:97284817-97284448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 125

               
               
               Conread position:468-849
               
               
               Cow position:chr1:52039195-52039572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 213

               
               
               Conread position:468-853
               
               
               Cow position:chr1:102321297-102320921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 110

               
               
               Conread position:468-854
               
               
               Cow position:chr1:55780695-55781081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 322

               
               
               Conread position:468-854
               
               
               Cow position:chr1:71946806-71946434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 145

               
               
               Conread position:468-854
               
               
               Cow position:chr1:90868869-90868500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):185, 59

               
               
               Conread position:468-860
               
               
               Cow position:chr1:40578335-40578731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 0

               
               
               Conread position:468-861
               
               
               Cow position:chr1:52496336-52496730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:291
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 99

               
               
               Conread position:468-862
               
               
               Cow position:chr1:68619362-68618985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 180

               
               
               Conread position:468-867
               
               
               Cow position:chr1:84894660-84895064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 70

               
               
               Conread position:468-869
               
               
               Cow position:chr1:81228771-81228383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):190, 68

               
               
               Conread position:468-871
               
               
               Cow position:chr1:57853920-57853513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):79, 69

               
               
               Conread position:468-883
               
               
               Cow position:chr1:36613716-36613306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 74

               
               
               Conread position:469-660
               
               
               Cow position:chr1:6305283-6305093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:469-672
               
               
               Cow position:chr1:57636646-57636850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):189, 0

               
               
               Conread position:469-775
               
               
               Cow position:chr1:85338688-85338993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 90

               
               
               Conread position:469-808
               
               
               Cow position:chr1:25183672-25184026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 321

               
               
               Conread position:469-854
               
               
               Cow position:chr1:61564352-61564737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 106

               
               
               Conread position:470-719
               
               
               Cow position:chr1:77883211-77883461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):191, 222

               
               
               Conread position:470-831
               
               
               Cow position:chr1:86599173-86598813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 67

               
               
               Conread position:470-852
               
               
               Cow position:chr1:11772513-11772135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):192, 9

               
               
               Conread position:470-860
               
               
               Cow position:chr1:31817349-31816957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 67

               
               
               Conread position:471-754
               
               
               Cow position:chr1:5289024-5289308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 9

               
               
               Conread position:471-869
               
               
               Cow position:chr1:54258133-54258521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):332, 166

               
               
               Conread position:472-670
               
               
               Cow position:chr1:71714540-71714738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):189, 8

               
               
               Conread position:472-754
               
               
               Cow position:chr1:49596039-49595749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:190
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):55, 13

               
               
               Conread position:472-754
               
               
               Cow position:chr1:61721809-61721521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):27, 118

               
               
               Conread position:472-758
               
               
               Cow position:chr1:19192154-19192441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):58, 167

               
               
               Conread position:472-860
               
               
               Cow position:chr1:28176566-28176956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):70, 175

               
               
               Conread position:472-873
               
               
               Cow position:chr1:36930264-36929858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):170, 165

               
               
               Conread position:473-745
               
               
               Cow position:chr1:8130136-8129867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:199
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):188, 164

               
               
               Conread position:473-746
               
               
               Cow position:chr1:38679417-38679700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):54, 21

               
               
               Conread position:473-747
               
               
               Cow position:chr1:71346918-71346637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):54, 165

               
               
               Conread position:473-751
               
               
               Cow position:chr1:19471800-19471521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 64

               
               
               Conread position:473-758
               
               
               Cow position:chr1:37761696-37761405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:473-759
               
               
               Cow position:chr1:25610938-25610654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):60, 20

               
               
               Conread position:473-872
               
               
               Cow position:chr1:51393975-51394377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 15

               
               
               Conread position:474-653
               
               
               Cow position:chr1:34857142-34856963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:145
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:474-662
               
               
               Cow position:chr1:6940997-6941190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):55, 95

               
               
               Conread position:474-669
               
               
               Cow position:chr1:53328238-53328042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:474-718
               
               
               Cow position:chr1:4662487-4662248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):187, 136

               
               
               Conread position:474-746
               
               
               Cow position:chr1:15916516-15916783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):20, 69

               
               
               Conread position:474-754
               
               
               Cow position:chr1:72951044-72951325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 0

               
               
               Conread position:474-769
               
               
               Cow position:chr1:2075762-2075468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 30

               
               
               Conread position:475-614
               
               
               Cow position:chr1:3607432-3607570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:475-647
               
               
               Cow position:chr1:61283227-61283406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 62

               
               
               Conread position:475-689
               
               
               Cow position:chr1:362481-362695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:166
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):186, 115

               
               
               Conread position:475-728
               
               
               Cow position:chr1:96203134-96202876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):54, 95

               
               
               Conread position:475-807
               
               
               Cow position:chr1:88911334-88910996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):58, 18

               
               
               Conread position:475-808
               
               
               Cow position:chr1:31274750-31274408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:237
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):62, 233

               
               
               Conread position:475-808
               
               
               Cow position:chr1:101551015-101551356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:475-820
               
               
               Cow position:chr1:71135723-71136059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):61, 181

               
               
               Conread position:475-836
               
               
               Cow position:chr1:34406357-34406720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):72, 62

               
               
               Conread position:475-836
               
               
               Cow position:chr1:64778247-64778612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 64

               
               
               Conread position:475-837
               
               
               Cow position:chr1:88970644-88970983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):323, 133

               
               
               Conread position:475-860
               
               
               Cow position:chr1:17286847-17286459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 63

               
               
               Conread position:476-745
               
               
               Cow position:chr1:31937602-31937328 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):47, 128

               
               
               Conread position:476-770
               
               
               Cow position:chr1:41987838-41987547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):63, 88

               
               
               Conread position:476-770
               
               
               Cow position:chr1:55443789-55443498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 61

               
               
               Conread position:476-799
               
               
               Cow position:chr1:12506895-12506572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:476-854
               
               
               Cow position:chr1:82502427-82502803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):186, 17

               
               
               Conread position:476-867
               
               
               Cow position:chr1:22261935-22262329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):71, 61

               
               
               Conread position:477-688
               
               
               Cow position:chr1:44076316-44076098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:477-688
               
               
               Cow position:chr1:53704103-53703882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:477-746
               
               
               Cow position:chr1:10646374-10646100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):67, 132

               
               
               Conread position:477-823
               
               
               Cow position:chr1:2952125-2951776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 18

               
               
               Conread position:477-854
               
               
               Cow position:chr1:82491627-82492003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):71, 39

               
               
               Conread position:477-869
               
               
               Cow position:chr1:57698891-57698489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 356

               
               
               Conread position:478-659
               
               
               Cow position:chr1:30664878-30665056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:478-853
               
               
               Cow position:chr1:81290089-81290447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):183, 159

               
               
               Conread position:479-743
               
               
               Cow position:chr1:22730333-22730595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:479-805
               
               
               Cow position:chr1:79498126-79497798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:479-922
               
               
               Cow position:chr1:95344622-95344193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:480-619
               
               
               Cow position:chr1:57396460-57396323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:480-669
               
               
               Cow position:chr1:70426350-70426533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):5, 40

               
               
               Conread position:480-672
               
               
               Cow position:chr1:15144059-15143866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 57

               
               
               Conread position:480-672
               
               
               Cow position:chr1:15145870-15145677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:154
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):67, 57

               
               
               Conread position:480-672
               
               
               Cow position:chr1:98796443-98796252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:152
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:480-737
               
               
               Cow position:chr1:100813215-100812951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:480-806
               
               
               Cow position:chr1:56232757-56233098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:224
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):57, 211

               
               
               Conread position:480-808
               
               
               Cow position:chr1:80974058-80973719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):56, 296

               
               
               Conread position:480-836
               
               
               Cow position:chr1:68087436-68087794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 57

               
               
               Conread position:480-859
               
               
               Cow position:chr1:21460439-21460815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 193

               
               
               Conread position:480-860
               
               
               Cow position:chr1:3137507-3137876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:279
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):182, 18

               
               
               Conread position:480-860
               
               
               Cow position:chr1:10727918-10728298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):181, 57

               
               
               Conread position:480-861
               
               
               Cow position:chr1:31765823-31765440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):69, 60

               
               
               Conread position:481-652
               
               
               Cow position:chr1:4055166-4054995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:129
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:481-672
               
               
               Cow position:chr1:25185988-25185796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):180, 0

               
               
               Conread position:481-806
               
               
               Cow position:chr1:27545382-27545712 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):60, 209

               
               
               Conread position:481-808
               
               
               Cow position:chr1:6321769-6322105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):7, 229

               
               
               Conread position:481-836
               
               
               Cow position:chr1:73464167-73464524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 211

               
               
               Conread position:481-869
               
               
               Cow position:chr1:3456444-3456827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:482-771
               
               
               Cow position:chr1:76495169-76494878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):122, 72

               
               
               Conread position:482-831
               
               
               Cow position:chr1:28012497-28012157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 58

               
               
               Conread position:482-847
               
               
               Cow position:chr1:88307658-88307296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:482-854
               
               
               Cow position:chr1:58191739-58191366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 155

               
               
               Conread position:482-860
               
               
               Cow position:chr1:41181414-41181792 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):178, 126

               
               
               Conread position:482-860
               
               
               Cow position:chr1:96487752-96488131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):179, 128

               
               
               Conread position:482-866
               
               
               Cow position:chr1:20528197-20528584 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:235
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):65, 55

               
               
               Conread position:482-870
               
               
               Cow position:chr1:102266700-102266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):67, 285

               
               
               Conread position:483-650
               
               
               Cow position:chr1:18780739-18780572 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:483-811
               
               
               Cow position:chr1:89435494-89435165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):64, 54

               
               
               Conread position:484-659
               
               
               Cow position:chr1:89306783-89306605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:484-688
               
               
               Cow position:chr1:3263954-3264158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:163
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):177, 197

               
               
               Conread position:484-727
               
               
               Cow position:chr1:80439406-80439167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):56, 42

               
               
               Conread position:484-821
               
               
               Cow position:chr1:23623721-23624082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 230

               
               
               Conread position:484-831
               
               
               Cow position:chr1:2744921-2745271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 275

               
               
               Conread position:484-851
               
               
               Cow position:chr1:88327413-88327046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 283

               
               
               Conread position:485-854
               
               
               Cow position:chr1:82504542-82504915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):176, 196

               
               
               Conread position:486-807
               
               
               Cow position:chr1:70282513-70282829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:230
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):40, 131

               
               
               Conread position:486-810
               
               
               Cow position:chr1:83946443-83946116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 52

               
               
               Conread position:487-644
               
               
               Cow position:chr1:43839253-43839095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):148, 106

               
               
               Conread position:487-645
               
               
               Cow position:chr1:5024513-5024352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:126
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:487-647
               
               
               Cow position:chr1:52994554-52994720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:487-649
               
               
               Cow position:chr1:41252846-41252694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:487-653
               
               
               Cow position:chr1:19483303-19483138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:487-660
               
               
               Cow position:chr1:52913321-52913150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):40, 151

               
               
               Conread position:487-661
               
               
               Cow position:chr1:24543092-24542918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:487-668
               
               
               Cow position:chr1:26729013-26729193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):70, 106

               
               
               Conread position:487-669
               
               
               Cow position:chr1:49357663-49357849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:487-729
               
               
               Cow position:chr1:91869841-91869600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 9

               
               
               Conread position:487-754
               
               
               Cow position:chr1:53306769-53307037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:487-759
               
               
               Cow position:chr1:71815208-71814933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):40, 139

               
               
               Conread position:487-807
               
               
               Cow position:chr1:81161589-81161904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):50, 163

               
               
               Conread position:487-810
               
               
               Cow position:chr1:30082322-30082647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 54

               
               
               Conread position:487-810
               
               
               Cow position:chr1:67001509-67001834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:487-817
               
               
               Cow position:chr1:48083137-48083461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):55, 130

               
               
               Conread position:487-820
               
               
               Cow position:chr1:46218151-46218488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):55, 273

               
               
               Conread position:487-836
               
               
               Cow position:chr1:34197785-34198136 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 50

               
               
               Conread position:487-838
               
               
               Cow position:chr1:83184830-83185177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 150

               
               
               Conread position:487-854
               
               
               Cow position:chr1:6200146-6200515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 50

               
               
               Conread position:487-857
               
               
               Cow position:chr1:38278454-38278089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):281, 34

               
               
               Conread position:487-860
               
               
               Cow position:chr1:10778151-10778513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 71

               
               
               Conread position:487-860
               
               
               Cow position:chr1:55158244-55157858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):168, 344

               
               
               Conread position:488-674
               
               
               Cow position:chr1:40926125-40926311 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):174, 32

               
               
               Conread position:488-860
               
               
               Cow position:chr1:31934085-31934459 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 50

               
               
               Conread position:489-652
               
               
               Cow position:chr1:97938232-97938395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:489-758
               
               
               Cow position:chr1:89262788-89262502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):46, 220

               
               
               Conread position:489-808
               
               
               Cow position:chr1:96558921-96559236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):173, 192

               
               
               Conread position:489-823
               
               
               Cow position:chr1:57615331-57615667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:489-838
               
               
               Cow position:chr1:24202150-24201822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:251
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):173, 70

               
               
               Conread position:489-867
               
               
               Cow position:chr1:90132857-90132476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 48

               
               
               Conread position:491-774
               
               
               Cow position:chr1:41138770-41138489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):171, 21

               
               
               Conread position:492-693
               
               
               Cow position:chr1:12143337-12143138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:162
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):169, 145

               
               
               Conread position:492-740
               
               
               Cow position:chr1:53488490-53488744 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):43, 71

               
               
               Conread position:492-801
               
               
               Cow position:chr1:88028873-88029173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:492-806
               
               
               Cow position:chr1:31358620-31358310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:220
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:492-807
               
               
               Cow position:chr1:100790327-100790023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):32, 69

               
               
               Conread position:492-808
               
               
               Cow position:chr1:43285626-43285310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):40, 122

               
               
               Conread position:492-810
               
               
               Cow position:chr1:40473905-40474217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:492-832
               
               
               Cow position:chr1:57573742-57573403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 48

               
               
               Conread position:492-836
               
               
               Cow position:chr1:1829725-1829396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):311, 168

               
               
               Conread position:492-836
               
               
               Cow position:chr1:12213905-12213559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 325

               
               
               Conread position:492-855
               
               
               Cow position:chr1:83082586-83082947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 51

               
               
               Conread position:492-862
               
               
               Cow position:chr1:72035347-72034976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):169, 206

               
               
               Conread position:492-867
               
               
               Cow position:chr1:30236644-30236267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:492-867
               
               
               Cow position:chr1:41486454-41486832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:492-867
               
               
               Cow position:chr1:87456946-87457324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 45

               
               
               Conread position:492-869
               
               
               Cow position:chr1:13548410-13548025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 46

               
               
               Conread position:493-688
               
               
               Cow position:chr1:18023723-18023532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):167, 24

               
               
               Conread position:493-770
               
               
               Cow position:chr1:47791887-47792157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):152, 40

               
               
               Conread position:493-807
               
               
               Cow position:chr1:60259017-60259332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 126

               
               
               Conread position:493-836
               
               
               Cow position:chr1:52941385-52941044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:493-860
               
               
               Cow position:chr1:79015233-79015602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 44

               
               
               Conread position:494-694
               
               
               Cow position:chr1:7232896-7233101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):26, 172

               
               
               Conread position:494-745
               
               
               Cow position:chr1:7739557-7739805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):168, 144

               
               
               Conread position:494-754
               
               
               Cow position:chr1:97755103-97755366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):132, 27

               
               
               Conread position:494-836
               
               
               Cow position:chr1:81670303-81669958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 43

               
               
               Conread position:494-860
               
               
               Cow position:chr1:102350185-102349807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):57, 46

               
               
               Conread position:495-746
               
               
               Cow position:chr1:52206271-52206528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:495-751
               
               
               Cow position:chr1:51359257-51358996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:198
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):47, 132

               
               
               Conread position:495-817
               
               
               Cow position:chr1:61162242-61162554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):13, 33

               
               
               Conread position:496-746
               
               
               Cow position:chr1:22823526-22823774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 141

               
               
               Conread position:496-758
               
               
               Cow position:chr1:79078567-79078297 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:496-763
               
               
               Cow position:chr1:33825421-33825685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 141

               
               
               Conread position:496-831
               
               
               Cow position:chr1:91978436-91978105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):53, 44

               
               
               Conread position:496-836
               
               
               Cow position:chr1:66576898-66577238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):165, 104

               
               
               Conread position:496-860
               
               
               Cow position:chr1:73448422-73448788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:371
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:496-867
               
               
               Cow position:chr1:50358125-50357752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 41

               
               
               Conread position:497-669
               
               
               Cow position:chr1:11195361-11195188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):78, 62

               
               
               Conread position:497-723
               
               
               Cow position:chr1:1941571-1941336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):47, 131

               
               
               Conread position:497-760
               
               
               Cow position:chr1:52384694-52384432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):156, 246

               
               
               Conread position:497-865
               
               
               Cow position:chr1:8349727-8349363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 132

               
               
               Conread position:498-669
               
               
               Cow position:chr1:79114675-79114846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):157, 55

               
               
               Conread position:498-694
               
               
               Cow position:chr1:7672069-7672269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):31, 52

               
               
               Conread position:498-770
               
               
               Cow position:chr1:89077881-89078154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:498-823
               
               
               Cow position:chr1:59790524-59790197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 39

               
               
               Conread position:499-820
               
               
               Cow position:chr1:28277239-28277556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 173

               
               
               Conread position:499-836
               
               
               Cow position:chr1:20389016-20389355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:499-849
               
               
               Cow position:chr1:60829590-60829243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 225

               
               
               Conread position:500-671
               
               
               Cow position:chr1:25499166-25499336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):158, 40

               
               
               Conread position:500-746
               
               
               Cow position:chr1:26186878-26186630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):29, 22

               
               
               Conread position:500-746
               
               
               Cow position:chr1:31907007-31907259 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):44, 239

               
               
               Conread position:500-853
               
               
               Cow position:chr1:90836402-90836059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):162, 69

               
               
               Conread position:501-751
               
               
               Cow position:chr1:26322920-26322667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 0

               
               
               Conread position:501-754
               
               
               Cow position:chr1:35686065-35685811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):160, 0

               
               
               Conread position:501-806
               
               
               Cow position:chr1:73845972-73845668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):41, 22

               
               
               Conread position:501-810
               
               
               Cow position:chr1:15477029-15476718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:501-836
               
               
               Cow position:chr1:54174530-54174867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 36

               
               
               Conread position:502-660
               
               
               Cow position:chr1:79294884-79295044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:119
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):48, 38

               
               
               Conread position:502-671
               
               
               Cow position:chr1:23999951-23999793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:130
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):159, 38

               
               
               Conread position:502-810
               
               
               Cow position:chr1:58385971-58386281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:502-851
               
               
               Cow position:chr1:57533746-57534097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):159, 0

               
               
               Conread position:503-808
               
               
               Cow position:chr1:29792081-29791771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):55, 199

               
               
               Conread position:503-860
               
               
               Cow position:chr1:61392200-61391842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 35

               
               
               Conread position:505-836
               
               
               Cow position:chr1:76478525-76478858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 32

               
               
               Conread position:505-854
               
               
               Cow position:chr1:40963285-40962936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):153, 182

               
               
               Conread position:506-648
               
               
               Cow position:chr1:97540372-97540228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:506-660
               
               
               Cow position:chr1:68676226-68676072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:506-687
               
               
               Cow position:chr1:6143848-6144029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):131, 156

               
               
               Conread position:506-736
               
               
               Cow position:chr1:22525201-22525443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:179
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):36, 6

               
               
               Conread position:507-688
               
               
               Cow position:chr1:43973024-43973206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:148
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):40, 30

               
               
               Conread position:507-720
               
               
               Cow position:chr1:45244107-45244319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:507-854
               
               
               Cow position:chr1:37694886-37694540 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 242

               
               
               Conread position:508-667
               
               
               Cow position:chr1:81482518-81482678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:508-670
               
               
               Cow position:chr1:50911657-50911494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):153, 0

               
               
               Conread position:508-849
               
               
               Cow position:chr1:74930137-74929777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:254
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):153, 329

               
               
               Conread position:508-853
               
               
               Cow position:chr1:102519272-102519605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 114

               
               
               Conread position:508-860
               
               
               Cow position:chr1:66752401-66752047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 184

               
               
               Conread position:508-860
               
               
               Cow position:chr1:71325649-71325300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 251

               
               
               Conread position:509-660
               
               
               Cow position:chr1:85825827-85825976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 129

               
               
               Conread position:509-775
               
               
               Cow position:chr1:50032245-50032510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 136

               
               
               Conread position:510-723
               
               
               Cow position:chr1:98702824-98703038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:160
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):78, 63

               
               
               Conread position:510-854
               
               
               Cow position:chr1:85151578-85151240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 34

               
               
               Conread position:511-805
               
               
               Cow position:chr1:14361703-14361998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:511-810
               
               
               Cow position:chr1:18637973-18638274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):150, 0

               
               
               Conread position:511-853
               
               
               Cow position:chr1:24133462-24133119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:511-867
               
               
               Cow position:chr1:69866602-69866247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:246
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:511-867
               
               
               Cow position:chr1:79554418-79554784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 26

               
               
               Conread position:512-653
               
               
               Cow position:chr1:4400947-4401087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:512-765
               
               
               Cow position:chr1:98412553-98412794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):149, 77

               
               
               Conread position:512-802
               
               
               Cow position:chr1:61534773-61534479 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):29, 177

               
               
               Conread position:513-828
               
               
               Cow position:chr1:60703563-60703876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 247

               
               
               Conread position:513-851
               
               
               Cow position:chr1:43829633-43829291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 24

               
               
               Conread position:513-853
               
               
               Cow position:chr1:101915772-101916112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 168

               
               
               Conread position:514-687
               
               
               Cow position:chr1:96081153-96081320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):138, 101

               
               
               Conread position:514-810
               
               
               Cow position:chr1:20339653-20339354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 22

               
               
               Conread position:514-810
               
               
               Cow position:chr1:59730364-59730068 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:515-669
               
               
               Cow position:chr1:16767336-16767492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:515-717
               
               
               Cow position:chr1:4416974-4416760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:515-773
               
               
               Cow position:chr1:79406474-79406215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:188
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):146, 177

               
               
               Conread position:515-805
               
               
               Cow position:chr1:40170184-40170476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:515-836
               
               
               Cow position:chr1:69406972-69407292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 25

               
               
               Conread position:516-831
               
               
               Cow position:chr1:60665099-60665415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 81

               
               
               Conread position:516-853
               
               
               Cow position:chr1:62963890-62964217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 43

               
               
               Conread position:516-854
               
               
               Cow position:chr1:70053334-70053670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):145, 176

               
               
               Conread position:516-862
               
               
               Cow position:chr1:70466181-70466526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 10

               
               
               Conread position:516-869
               
               
               Cow position:chr1:94211840-94212189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 165

               
               
               Conread position:517-669
               
               
               Cow position:chr1:22412787-22412940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):30, 20

               
               
               Conread position:517-852
               
               
               Cow position:chr1:3035383-3035054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):31, 67

               
               
               Conread position:517-852
               
               
               Cow position:chr1:3720819-3720495 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:240
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):119, 132

               
               
               Conread position:517-854
               
               
               Cow position:chr1:58889686-58889354 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):145, 93

               
               
               Conread position:518-822
               
               
               Cow position:chr1:72304760-72304462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):7, 42

               
               
               Conread position:520-836
               
               
               Cow position:chr1:67532693-67533011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):27, 20

               
               
               Conread position:520-836
               
               
               Cow position:chr1:98977546-98977866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):131, 174

               
               
               Conread position:520-857
               
               
               Cow position:chr1:68276018-68276356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 47

               
               
               Conread position:520-862
               
               
               Cow position:chr1:91817161-91816824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 127

               
               
               Conread position:520-873
               
               
               Cow position:chr1:80869718-80870075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 36

               
               
               Conread position:521-861
               
               
               Cow position:chr1:20125224-20125561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 22

               
               
               Conread position:522-748
               
               
               Cow position:chr1:101281318-101281094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:175
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):139, 14

               
               
               Conread position:523-770
               
               
               Cow position:chr1:57314817-57315064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):140, 160

               
               
               Conread position:523-782
               
               
               Cow position:chr1:79632484-79632223 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 180

               
               
               Conread position:523-836
               
               
               Cow position:chr1:98228511-98228194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):138, 169

               
               
               Conread position:525-821
               
               
               Cow position:chr1:54484674-54484977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):12, 165

               
               
               Conread position:525-860
               
               
               Cow position:chr1:102647654-102647325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 232

               
               
               Conread position:525-862
               
               
               Cow position:chr1:31348817-31348492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):290, 118

               
               
               Conread position:526-660
               
               
               Cow position:chr1:53202562-53202696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:100
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:526-669
               
               
               Cow position:chr1:95035955-95035811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:526-676
               
               
               Cow position:chr1:82095336-82095487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:526-729
               
               
               Cow position:chr1:99039863-99039659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:526-773
               
               
               Cow position:chr1:6760401-6760154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:526-810
               
               
               Cow position:chr1:94962467-94962181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:526-823
               
               
               Cow position:chr1:97512532-97512831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:526-830
               
               
               Cow position:chr1:5562189-5561890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 14

               
               
               Conread position:526-836
               
               
               Cow position:chr1:73564683-73564371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:526-847
               
               
               Cow position:chr1:48105820-48105500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 235

               
               
               Conread position:526-857
               
               
               Cow position:chr1:93858586-93858915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:238
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 14

               
               
               Conread position:526-860
               
               
               Cow position:chr1:34159451-34159784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):136, 110

               
               
               Conread position:526-860
               
               
               Cow position:chr1:37414193-37413863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:229
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):135, 233

               
               
               Conread position:526-867
               
               
               Cow position:chr1:17435370-17435026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:527-770
               
               
               Cow position:chr1:40437361-40437117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:527-782
               
               
               Cow position:chr1:42869534-42869284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:191
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):126, 65

               
               
               Conread position:527-817
               
               
               Cow position:chr1:35844311-35844026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):8, 50

               
               
               Conread position:527-831
               
               
               Cow position:chr1:55043412-55043112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:217
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):135, 110

               
               
               Conread position:527-860
               
               
               Cow position:chr1:44244876-44244542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:229
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):134, 79

               
               
               Conread position:527-867
               
               
               Cow position:chr1:63388665-63388322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:527-867
               
               
               Cow position:chr1:70543358-70543700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 10

               
               
               Conread position:528-727
               
               
               Cow position:chr1:2994693-2994891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:528-727
               
               
               Cow position:chr1:2997443-2997641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):133, 55

               
               
               Conread position:528-823
               
               
               Cow position:chr1:69903065-69902768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 9

               
               
               Conread position:528-858
               
               
               Cow position:chr1:8241-8567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 79

               
               
               Conread position:528-858
               
               
               Cow position:chr1:72181459-72181776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):110, 0

               
               
               Conread position:529-672
               
               
               Cow position:chr1:71254078-71253934 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):132, 0

               
               
               Conread position:529-746
               
               
               Cow position:chr1:21221332-21221118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):132, 11

               
               
               Conread position:529-754
               
               
               Cow position:chr1:94526115-94526339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 7

               
               
               Conread position:529-773
               
               
               Cow position:chr1:43821996-43822240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):132, 152

               
               
               Conread position:529-807
               
               
               Cow position:chr1:28325783-28326062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):30, 158

               
               
               Conread position:529-850
               
               
               Cow position:chr1:91800979-91800665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):153, 69

               
               
               Conread position:529-858
               
               
               Cow position:chr1:91039540-91039224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):132, 159

               
               
               Conread position:529-862
               
               
               Cow position:chr1:50634792-50634453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):127, 89

               
               
               Conread position:530-682
               
               
               Cow position:chr1:22790452-22790604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):126, 91

               
               
               Conread position:530-725
               
               
               Cow position:chr1:43789302-43789504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):74, 35

               
               
               Conread position:530-823
               
               
               Cow position:chr1:13131086-13131380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:530-828
               
               
               Cow position:chr1:29520244-29519942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):124, 0

               
               
               Conread position:530-860
               
               
               Cow position:chr1:12222985-12222657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 232

               
               
               Conread position:530-860
               
               
               Cow position:chr1:35162029-35162356 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 55

               
               
               Conread position:530-867
               
               
               Cow position:chr1:56692703-56692363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 7

               
               
               Conread position:531-660
               
               
               Cow position:chr1:15956319-15956448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:531-666
               
               
               Cow position:chr1:27378865-27379001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):80, 17

               
               
               Conread position:531-669
               
               
               Cow position:chr1:95971499-95971638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:531-669
               
               
               Cow position:chr1:95972635-95972774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:531-836
               
               
               Cow position:chr1:66909449-66909756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 6

               
               
               Conread position:532-799
               
               
               Cow position:chr1:63877170-63876903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:192
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):129, 10

               
               
               Conread position:533-762
               
               
               Cow position:chr1:63079865-63079621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):116, 79

               
               
               Conread position:533-827
               
               
               Cow position:chr1:94232785-94233076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):128, 180

               
               
               Conread position:534-827
               
               
               Cow position:chr1:61876423-61876717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):32, 18

               
               
               Conread position:535-844
               
               
               Cow position:chr1:99614077-99614383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):126, 135

               
               
               Conread position:536-686
               
               
               Cow position:chr1:2063110-2062968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:537-875
               
               
               Cow position:chr1:61638796-61639138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:538-686
               
               
               Cow position:chr1:21551916-21551766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:122
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:538-867
               
               
               Cow position:chr1:24411272-24410940 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:540-724
               
               
               Cow position:chr1:8243008-8243183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:540-810
               
               
               Cow position:chr1:7891969-7892242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:198
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:540-810
               
               
               Cow position:chr1:49601193-49600912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:540-817
               
               
               Cow position:chr1:9444212-9443941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):15, 123

               
               
               Conread position:541-664
               
               
               Cow position:chr1:101468239-101468115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 19

               
               
               Conread position:541-754
               
               
               Cow position:chr1:53792809-53792595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):121, 0

               
               
               Conread position:541-794
               
               
               Cow position:chr1:34624123-34624375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):58, 141

               
               
               Conread position:541-800
               
               
               Cow position:chr1:100095321-100095063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):108, 22

               
               
               Conread position:541-860
               
               
               Cow position:chr1:36997828-36998142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:225
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):120, 150

               
               
               Conread position:542-762
               
               
               Cow position:chr1:27462633-27462848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):169, 17

               
               
               Conread position:542-860
               
               
               Cow position:chr1:91066515-91066206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 6

               
               
               Conread position:543-683
               
               
               Cow position:chr1:102618201-102618338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:115
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):118, 77

               
               
               Conread position:543-729
               
               
               Cow position:chr1:29826183-29825994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:543-770
               
               
               Cow position:chr1:6278093-6278321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:169
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:543-830
               
               
               Cow position:chr1:91808763-91808473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):33, 150

               
               
               Conread position:543-851
               
               
               Cow position:chr1:52488319-52488023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):50, 56

               
               
               Conread position:543-851
               
               
               Cow position:chr1:52598467-52598161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 261

               
               
               Conread position:543-860
               
               
               Cow position:chr1:1877660-1877976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 61

               
               
               Conread position:543-860
               
               
               Cow position:chr1:90640665-90640978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 70

               
               
               Conread position:544-669
               
               
               Cow position:chr1:62996032-62996155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:544-695
               
               
               Cow position:chr1:53539714-53539868 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):106, 0

               
               
               Conread position:544-758
               
               
               Cow position:chr1:3657732-3657519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):118, 93

               
               
               Conread position:544-767
               
               
               Cow position:chr1:76938363-76938139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:179
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:544-831
               
               
               Cow position:chr1:56426142-56426434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):105, 281

               
               
               Conread position:544-832
               
               
               Cow position:chr1:77836615-77836336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):259, 27

               
               
               Conread position:544-836
               
               
               Cow position:chr1:64928972-64928678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:544-847
               
               
               Cow position:chr1:56073834-56073526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):104, 230

               
               
               Conread position:544-851
               
               
               Cow position:chr1:3167432-3167131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):106, 134

               
               
               Conread position:544-854
               
               
               Cow position:chr1:86696770-86696458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 148

               
               
               Conread position:544-854
               
               
               Cow position:chr1:99118023-99118330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 12

               
               
               Conread position:544-855
               
               
               Cow position:chr1:7800248-7800555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):118, 50

               
               
               Conread position:544-860
               
               
               Cow position:chr1:24015695-24015377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):117, 148

               
               
               Conread position:544-860
               
               
               Cow position:chr1:55135474-55135779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:228
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):15, 110

               
               
               Conread position:544-860
               
               
               Cow position:chr1:83943711-83943399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):118, 36

               
               
               Conread position:545-658
               
               
               Cow position:chr1:37323517-37323404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:545-766
               
               
               Cow position:chr1:3353297-3353084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):109, 38

               
               
               Conread position:545-860
               
               
               Cow position:chr1:82884750-82884443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 136

               
               
               Conread position:545-860
               
               
               Cow position:chr1:84239451-84239166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:214
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):270, 63

               
               
               Conread position:546-669
               
               
               Cow position:chr1:13978630-13978506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:105
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:546-746
               
               
               Cow position:chr1:55049142-55049337 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:546-762
               
               
               Cow position:chr1:19971190-19970982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:161
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:546-770
               
               
               Cow position:chr1:52374673-52374898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:546-795
               
               
               Cow position:chr1:61104140-61103892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):115, 135

               
               
               Conread position:546-810
               
               
               Cow position:chr1:47544399-47544662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 214

               
               
               Conread position:546-826
               
               
               Cow position:chr1:97983720-97984011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):109, 160

               
               
               Conread position:546-836
               
               
               Cow position:chr1:13210840-13210553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):114, 213

               
               
               Conread position:546-836
               
               
               Cow position:chr1:20341062-20340770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:546-836
               
               
               Cow position:chr1:24737370-24737078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 91

               
               
               Conread position:546-836
               
               
               Cow position:chr1:77223033-77223325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:546-854
               
               
               Cow position:chr1:90095855-90095548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):115, 91

               
               
               Conread position:546-860
               
               
               Cow position:chr1:62582965-62582647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:546-862
               
               
               Cow position:chr1:52329891-52329580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):261, 75

               
               
               Conread position:546-867
               
               
               Cow position:chr1:48639042-48638718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:547-674
               
               
               Cow position:chr1:79329125-79328998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:547-836
               
               
               Cow position:chr1:94664888-94665170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):114, 146

               
               
               Conread position:548-696
               
               
               Cow position:chr1:96371736-96371585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:125
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:548-835
               
               
               Cow position:chr1:96365311-96365587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):16, 194

               
               
               Conread position:548-836
               
               
               Cow position:chr1:20847258-20847547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:205
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):107, 113

               
               
               Conread position:549-746
               
               
               Cow position:chr1:80999851-80999655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:549-860
               
               
               Cow position:chr1:35491937-35491630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:223
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):112, 87

               
               
               Conread position:550-746
               
               
               Cow position:chr1:84456479-84456674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:159
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):111, 75

               
               
               Conread position:550-754
               
               
               Cow position:chr1:31085708-31085503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:550-836
               
               
               Cow position:chr1:40265500-40265213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:210
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:551-766
               
               
               Cow position:chr1:31852149-31852365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):111, 124

               
               
               Conread position:551-837
               
               
               Cow position:chr1:42256870-42256579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 272

               
               
               Conread position:552-860
               
               
               Cow position:chr1:69539339-69539644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 131

               
               
               Conread position:553-661
               
               
               Cow position:chr1:6961447-6961555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:87
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:553-668
               
               
               Cow position:chr1:30437095-30436979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:94
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:553-688
               
               
               Cow position:chr1:5209641-5209505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:112
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:553-748
               
               
               Cow position:chr1:4645394-4645203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):109, 84

               
               
               Conread position:553-765
               
               
               Cow position:chr1:30363300-30363506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:154
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):109, 68

               
               
               Conread position:553-836
               
               
               Cow position:chr1:68481259-68481543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):108, 174

               
               
               Conread position:553-836
               
               
               Cow position:chr1:69019776-69019491 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:553-836
               
               
               Cow position:chr1:88678248-88678534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:202
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):108, 244

               
               
               Conread position:553-854
               
               
               Cow position:chr1:31646857-31647150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:218
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):101, 109

               
               
               Conread position:553-860
               
               
               Cow position:chr1:100551605-100551916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 217

               
               
               Conread position:555-680
               
               
               Cow position:chr1:28412898-28412768 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:105
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):9, 90

               
               
               Conread position:555-758
               
               
               Cow position:chr1:99277966-99277761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):99, 33

               
               
               Conread position:555-791
               
               
               Cow position:chr1:52693681-52693452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:555-805
               
               
               Cow position:chr1:15178829-15179077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):107, 56

               
               
               Conread position:556-808
               
               
               Cow position:chr1:70865170-70865421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-38
               
               
               Alignm gaps (pig, cow):105, 137

               
               
               Conread position:556-860
               
               
               Cow position:chr1:5623903-5623605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):105, 206

               
               
               Conread position:556-862
               
               
               Cow position:chr1:22467574-22467882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:223
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):92, 208

               
               
               Conread position:556-862
               
               
               Cow position:chr1:83982729-83982422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):95, 27

               
               
               Conread position:558-746
               
               
               Cow position:chr1:70296916-70297108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:558-806
               
               
               Cow position:chr1:74040883-74040639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):103, 25

               
               
               Conread position:558-807
               
               
               Cow position:chr1:18527171-18526923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:558-814
               
               
               Cow position:chr1:67014034-67014286 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:558-829
               
               
               Cow position:chr1:80356819-80356548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:187
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):103, 182

               
               
               Conread position:558-859
               
               
               Cow position:chr1:100771086-100770803 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:221
               
               
               Alignm E-value:3e-40
               
               
               Alignm gaps (pig, cow):104, 78

               
               
               Conread position:559-678
               
               
               Cow position:chr1:3399022-3398902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:559-757
               
               
               Cow position:chr1:65067303-65067105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:158
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):103, 167

               
               
               Conread position:559-808
               
               
               Cow position:chr1:78689574-78689831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:559-831
               
               
               Cow position:chr1:88562655-88562385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:195
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):103, 121

               
               
               Conread position:559-836
               
               
               Cow position:chr1:80010873-80011152 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:9.94922e-44
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:559-862
               
               
               Cow position:chr1:21508040-21508339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:212
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):102, 111

               
               
               Conread position:559-866
               
               
               Cow position:chr1:95712617-95712307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:560-678
               
               
               Cow position:chr1:31804977-31805096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 0

               
               
               Conread position:560-758
               
               
               Cow position:chr1:66898828-66898629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):37, 72

               
               
               Conread position:560-803
               
               
               Cow position:chr1:22199820-22200055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):231, 68

               
               
               Conread position:560-851
               
               
               Cow position:chr1:24909441-24909150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):101, 112

               
               
               Conread position:560-868
               
               
               Cow position:chr1:66429951-66430254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):102, 121

               
               
               Conread position:561-751
               
               
               Cow position:chr1:15050013-15050200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):89, 101

               
               
               Conread position:561-758
               
               
               Cow position:chr1:48444527-48444336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:161
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):101, 76

               
               
               Conread position:561-836
               
               
               Cow position:chr1:8884474-8884751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:196
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:561-860
               
               
               Cow position:chr1:22630503-22630804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):101, 0

               
               
               Conread position:562-688
               
               
               Cow position:chr1:44955757-44955630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:562-692
               
               
               Cow position:chr1:97669023-97669154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:110
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:562-762
               
               
               Cow position:chr1:8124100-8123895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):74, 127

               
               
               Conread position:562-837
               
               
               Cow position:chr1:95687448-95687177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):98, 12

               
               
               Conread position:562-853
               
               
               Cow position:chr1:20204677-20204968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 201

               
               
               Conread position:562-854
               
               
               Cow position:chr1:47543324-47543613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.06377e-44
               
               
               Alignm gaps (pig, cow):89, 99

               
               
               Conread position:563-746
               
               
               Cow position:chr1:65031253-65031073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):82, 0

               
               
               Conread position:563-754
               
               
               Cow position:chr1:100470032-100469840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):99, 0

               
               
               Conread position:563-860
               
               
               Cow position:chr1:63503994-63504280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:201
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:563-860
               
               
               Cow position:chr1:69695353-69695045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):97, 74

               
               
               Conread position:564-835
               
               
               Cow position:chr1:81350173-81349899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:194
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):97, 129

               
               
               Conread position:565-751
               
               
               Cow position:chr1:37726718-37726533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:148
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):44, 73

               
               
               Conread position:565-769
               
               
               Cow position:chr1:72355766-72355966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:141
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):128, 44

               
               
               Conread position:569-776
               
               
               Cow position:chr1:98561758-98561965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:126
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:569-805
               
               
               Cow position:chr1:20564424-20564660 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):93, 68

               
               
               Conread position:569-852
               
               
               Cow position:chr1:98562819-98563101 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 112

               
               
               Conread position:570-823
               
               
               Cow position:chr1:24736606-24736351 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):90, 122

               
               
               Conread position:570-831
               
               
               Cow position:chr1:97502372-97502630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):15, 81

               
               
               Conread position:570-854
               
               
               Cow position:chr1:22251414-22251132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:203
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):91, 189

               
               
               Conread position:570-860
               
               
               Cow position:chr1:71280373-71280081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:200
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):91, 191

               
               
               Conread position:571-867
               
               
               Cow position:chr1:18208158-18208455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):90, 169

               
               
               Conread position:572-860
               
               
               Cow position:chr1:23488848-23488560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):90, 65

               
               
               Conread position:573-737
               
               
               Cow position:chr1:67550906-67550732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:573-762
               
               
               Cow position:chr1:29662636-29662448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:141
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):137, 87

               
               
               Conread position:573-810
               
               
               Cow position:chr1:1263055-1263294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:573-810
               
               
               Cow position:chr1:21037774-21038013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:174
               
               
               Alignm E-value:8e-40
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:573-821
               
               
               Cow position:chr1:101713778-101714029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):76, 49

               
               
               Conread position:573-823
               
               
               Cow position:chr1:40048107-40048360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:573-823
               
               
               Cow position:chr1:75935556-75935305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 248

               
               
               Conread position:573-836
               
               
               Cow position:chr1:3257487-3257748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):70, 46

               
               
               Conread position:573-836
               
               
               Cow position:chr1:54597012-54596746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:183
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):88, 0

               
               
               Conread position:573-836
               
               
               Cow position:chr1:95604674-95604939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):88, 118

               
               
               Conread position:573-837
               
               
               Cow position:chr1:77857676-77857413 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):88, 71

               
               
               Conread position:573-838
               
               
               Cow position:chr1:81913486-81913224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 64

               
               
               Conread position:573-853
               
               
               Cow position:chr1:77462029-77462300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):88, 46

               
               
               Conread position:573-854
               
               
               Cow position:chr1:22745290-22745565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:204
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):88, 124

               
               
               Conread position:573-863
               
               
               Cow position:chr1:69264485-69264763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:218
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):87, 108

               
               
               Conread position:574-861
               
               
               Cow position:chr1:53594989-53595267 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):88, 188

               
               
               Conread position:574-867
               
               
               Cow position:chr1:91084999-91084703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:205
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:575-695
               
               
               Cow position:chr1:90976631-90976513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:101
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:575-837
               
               
               Cow position:chr1:31548503-31548763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:200
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):86, 121

               
               
               Conread position:575-853
               
               
               Cow position:chr1:36879943-36880219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:199
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):85, 184

               
               
               Conread position:575-854
               
               
               Cow position:chr1:73960365-73960646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 230

               
               
               Conread position:575-861
               
               
               Cow position:chr1:19440349-19440067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):87, 68

               
               
               Conread position:575-869
               
               
               Cow position:chr1:95215511-95215222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):240, 37

               
               
               Conread position:576-810
               
               
               Cow position:chr1:26789668-26789904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:576-831
               
               
               Cow position:chr1:82226827-82227081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:186
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):88, 116

               
               
               Conread position:576-860
               
               
               Cow position:chr1:5873307-5873024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 107

               
               
               Conread position:577-660
               
               
               Cow position:chr1:73947759-73947841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:84
               
               
               Alignm identity:75
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:577-727
               
               
               Cow position:chr1:17653176-17653324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):84, 60

               
               
               Conread position:577-754
               
               
               Cow position:chr1:60986636-60986816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:577-758
               
               
               Cow position:chr1:36920958-36920784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:577-828
               
               
               Cow position:chr1:62337965-62337722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:185
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):84, 104

               
               
               Conread position:577-851
               
               
               Cow position:chr1:75093161-75093437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:195
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):83, 0

               
               
               Conread position:577-854
               
               
               Cow position:chr1:61494544-61494822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):84, 182

               
               
               Conread position:577-854
               
               
               Cow position:chr1:94876017-94875734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):35, 110

               
               
               Conread position:577-861
               
               
               Cow position:chr1:7350205-7350490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):84, 121

               
               
               Conread position:577-862
               
               
               Cow position:chr1:65530237-65529950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:205
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):84, 115

               
               
               Conread position:578-768
               
               
               Cow position:chr1:21560623-21560811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):71, 38

               
               
               Conread position:579-854
               
               
               Cow position:chr1:23969366-23969096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:204
               
               
               Alignm E-value:3.9937e-43
               
               
               Alignm gaps (pig, cow):155, 81

               
               
               Conread position:579-858
               
               
               Cow position:chr1:95100637-95100908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:198
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):82, 10

               
               
               Conread position:580-821
               
               
               Cow position:chr1:15307709-15307943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):82, 32

               
               
               Conread position:580-827
               
               
               Cow position:chr1:11659318-11659559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):82, 8

               
               
               Conread position:580-836
               
               
               Cow position:chr1:30693045-30692786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):80, 241

               
               
               Conread position:580-851
               
               
               Cow position:chr1:13895815-13895544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):81, 21

               
               
               Conread position:581-729
               
               
               Cow position:chr1:6789021-6788875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):81, 55

               
               
               Conread position:581-811
               
               
               Cow position:chr1:21926223-21925995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):80, 194

               
               
               Conread position:581-857
               
               
               Cow position:chr1:43211449-43211715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:201
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):80, 123

               
               
               Conread position:581-860
               
               
               Cow position:chr1:39418447-39418174 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:203
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):81, 101

               
               
               Conread position:582-762
               
               
               Cow position:chr1:28513454-28513273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:583-854
               
               
               Cow position:chr1:57901064-57900799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:201
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):152, 66

               
               
               Conread position:584-759
               
               
               Cow position:chr1:732251-732075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:139
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:584-775
               
               
               Cow position:chr1:37887112-37886921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:153
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:584-873
               
               
               Cow position:chr1:92666777-92666486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):77, 175

               
               
               Conread position:585-737
               
               
               Cow position:chr1:100791652-100791501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):75, 95

               
               
               Conread position:585-806
               
               
               Cow position:chr1:39718688-39718912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):77, 40

               
               
               Conread position:585-810
               
               
               Cow position:chr1:8857119-8856892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:585-810
               
               
               Cow position:chr1:14743438-14743211 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):58, 52

               
               
               Conread position:585-867
               
               
               Cow position:chr1:46710433-46710149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):77, 52

               
               
               Conread position:586-836
               
               
               Cow position:chr1:72737443-72737191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:586-860
               
               
               Cow position:chr1:97513406-97513130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:587-782
               
               
               Cow position:chr1:7022136-7022332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:155
               
               
               Alignm E-value:8.99998e-41
               
               
               Alignm gaps (pig, cow):74, 94

               
               
               Conread position:587-860
               
               
               Cow position:chr1:85596623-85596888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):73, 86

               
               
               Conread position:588-851
               
               
               Cow position:chr1:52850224-52850489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:589-836
               
               
               Cow position:chr1:99100781-99101030 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:589-861
               
               
               Cow position:chr1:80988028-80988292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:200
               
               
               Alignm E-value:7e-39
               
               
               Alignm gaps (pig, cow):213, 55

               
               
               Conread position:590-809
               
               
               Cow position:chr1:50765042-50765255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):31, 60

               
               
               Conread position:590-823
               
               
               Cow position:chr1:81579439-81579677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):65, 161

               
               
               Conread position:590-854
               
               
               Cow position:chr1:52754463-52754196 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):7, 92

               
               
               Conread position:591-810
               
               
               Cow position:chr1:98906620-98906402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 113

               
               
               Conread position:591-829
               
               
               Cow position:chr1:16013251-16013493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:591-854
               
               
               Cow position:chr1:39555061-39555317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):212, 76

               
               
               Conread position:591-860
               
               
               Cow position:chr1:63435122-63434859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:200
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):71, 105

               
               
               Conread position:591-860
               
               
               Cow position:chr1:84282742-84283021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:591-871
               
               
               Cow position:chr1:28812650-28812931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):70, 171

               
               
               Conread position:592-764
               
               
               Cow position:chr1:61149851-61149678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):33, 61

               
               
               Conread position:592-807
               
               
               Cow position:chr1:1996016-1995806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):119, 67

               
               
               Conread position:592-807
               
               
               Cow position:chr1:71121188-71121406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 89

               
               
               Conread position:592-851
               
               
               Cow position:chr1:41056366-41056620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):69, 106

               
               
               Conread position:592-854
               
               
               Cow position:chr1:49839204-49839446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):95, 63

               
               
               Conread position:592-859
               
               
               Cow position:chr1:69445056-69445310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:187
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):70, 45

               
               
               Conread position:593-836
               
               
               Cow position:chr1:21060398-21060642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:593-836
               
               
               Cow position:chr1:21225611-21225859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:594-750
               
               
               Cow position:chr1:82993243-82993400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:594-767
               
               
               Cow position:chr1:91886382-91886216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):68, 87

               
               
               Conread position:594-799
               
               
               Cow position:chr1:51453983-51454190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:594-833
               
               
               Cow position:chr1:5990604-5990833 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):73, 26

               
               
               Conread position:594-836
               
               
               Cow position:chr1:16272729-16272489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):66, 87

               
               
               Conread position:594-854
               
               
               Cow position:chr1:70930494-70930750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:183
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):67, 174

               
               
               Conread position:594-860
               
               
               Cow position:chr1:87007096-87006828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:184
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):68, 197

               
               
               Conread position:594-867
               
               
               Cow position:chr1:28274919-28275195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:187
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:595-810
               
               
               Cow position:chr1:22142967-22143184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:595-836
               
               
               Cow position:chr1:79445105-79444867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):65, 75

               
               
               Conread position:595-853
               
               
               Cow position:chr1:100800042-100800296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:187
               
               
               Alignm E-value:6e-37
               
               
               Alignm gaps (pig, cow):66, 85

               
               
               Conread position:595-859
               
               
               Cow position:chr1:4573218-4573467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):220, 61

               
               
               Conread position:596-754
               
               
               Cow position:chr1:23311734-23311893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:596-836
               
               
               Cow position:chr1:83048513-83048281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):66, 120

               
               
               Conread position:596-852
               
               
               Cow position:chr1:88652317-88652569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:194
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):65, 85

               
               
               Conread position:596-864
               
               
               Cow position:chr1:73561963-73561696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):65, 77

               
               
               Conread position:597-787
               
               
               Cow position:chr1:91370789-91370603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:147
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):64, 149

               
               
               Conread position:597-854
               
               
               Cow position:chr1:98360727-98360457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:597-863
               
               
               Cow position:chr1:79663977-79663715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:192
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:598-806
               
               
               Cow position:chr1:61304369-61304574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):64, 169

               
               
               Conread position:598-810
               
               
               Cow position:chr1:5301048-5301262 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:150
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:598-850
               
               
               Cow position:chr1:31845723-31845965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):63, 83

               
               
               Conread position:599-837
               
               
               Cow position:chr1:60910034-60910275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):62, 130

               
               
               Conread position:599-858
               
               
               Cow position:chr1:18937144-18936884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:3.00004e-41
               
               
               Alignm gaps (pig, cow):216, 0

               
               
               Conread position:600-806
               
               
               Cow position:chr1:97430962-97430750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:151
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):61, 172

               
               
               Conread position:601-754
               
               
               Cow position:chr1:24528907-24528754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 50

               
               
               Conread position:601-828
               
               
               Cow position:chr1:19657721-19657949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:601-860
               
               
               Cow position:chr1:68845789-68845538 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):57, 42

               
               
               Conread position:603-799
               
               
               Cow position:chr1:75798094-75797897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:603-852
               
               
               Cow position:chr1:81673757-81674005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):58, 129

               
               
               Conread position:603-854
               
               
               Cow position:chr1:46354605-46354857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):58, 156

               
               
               Conread position:603-864
               
               
               Cow position:chr1:1053281-1053544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):59, 164

               
               
               Conread position:604-836
               
               
               Cow position:chr1:57577422-57577656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:604-860
               
               
               Cow position:chr1:22448890-22448640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:192
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):58, 77

               
               
               Conread position:604-871
               
               
               Cow position:chr1:33413076-33412805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:605-823
               
               
               Cow position:chr1:21339463-21339244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):57, 216

               
               
               Conread position:605-850
               
               
               Cow position:chr1:35170032-35170275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):57, 77

               
               
               Conread position:605-852
               
               
               Cow position:chr1:40248868-40249121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:605-852
               
               
               Cow position:chr1:61175878-61176124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):57, 160

               
               
               Conread position:605-853
               
               
               Cow position:chr1:47008727-47008971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:185
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):75, 37

               
               
               Conread position:605-859
               
               
               Cow position:chr1:71257788-71257532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):58, 215

               
               
               Conread position:606-830
               
               
               Cow position:chr1:17399163-17399388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):56, 130

               
               
               Conread position:608-806
               
               
               Cow position:chr1:71748306-71748114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:153
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):54, 6

               
               
               Conread position:608-854
               
               
               Cow position:chr1:66138018-66138261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):54, 29

               
               
               Conread position:609-854
               
               
               Cow position:chr1:33811633-33811870 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-36
               
               
               Alignm gaps (pig, cow):53, 133

               
               
               Conread position:610-810
               
               
               Cow position:chr1:1760144-1760346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):52, 185

               
               
               Conread position:610-853
               
               
               Cow position:chr1:77720527-77720295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):52, 61

               
               
               Conread position:612-759
               
               
               Cow position:chr1:3076687-3076541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):129, 49

               
               
               Conread position:612-810
               
               
               Cow position:chr1:56273648-56273447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:612-851
               
               
               Cow position:chr1:20714604-20714363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:612-860
               
               
               Cow position:chr1:87888108-87888347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):191, 25

               
               
               Conread position:613-816
               
               
               Cow position:chr1:78291700-78291906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):49, 79

               
               
               Conread position:613-863
               
               
               Cow position:chr1:68217657-68217415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):49, 180

               
               
               Conread position:614-814
               
               
               Cow position:chr1:636120-635916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-31
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:614-854
               
               
               Cow position:chr1:81613089-81613330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):48, 190

               
               
               Conread position:615-823
               
               
               Cow position:chr1:12375081-12375291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:615-837
               
               
               Cow position:chr1:98380872-98380649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):46, 160

               
               
               Conread position:616-836
               
               
               Cow position:chr1:94256535-94256321 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):186, 51

               
               
               Conread position:617-859
               
               
               Cow position:chr1:1991723-1991476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):41, 205

               
               
               Conread position:617-860
               
               
               Cow position:chr1:34000612-34000859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 203

               
               
               Conread position:620-836
               
               
               Cow position:chr1:77704724-77704505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):42, 62

               
               
               Conread position:620-860
               
               
               Cow position:chr1:91142445-91142207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):41, 83

               
               
               Conread position:621-877
               
               
               Cow position:chr1:85806825-85806564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:622-808
               
               
               Cow position:chr1:29627203-29627017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-35
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:622-808
               
               
               Cow position:chr1:57848083-57848271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):40, 70

               
               
               Conread position:622-853
               
               
               Cow position:chr1:25383374-25383603 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):40, 20

               
               
               Conread position:623-810
               
               
               Cow position:chr1:69667197-69667389 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:134
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:623-836
               
               
               Cow position:chr1:98876764-98876977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:147
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):39, 117

               
               
               Conread position:623-867
               
               
               Cow position:chr1:7785923-7785680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):39, 131

               
               
               Conread position:623-867
               
               
               Cow position:chr1:12087201-12087448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:161
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:624-836
               
               
               Cow position:chr1:10498876-10499093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:150
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:624-854
               
               
               Cow position:chr1:5409897-5409673 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):45, 18

               
               
               Conread position:625-767
               
               
               Cow position:chr1:63311278-63311420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):37, 121

               
               
               Conread position:625-860
               
               
               Cow position:chr1:3538034-3537798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):37, 150

               
               
               Conread position:625-861
               
               
               Cow position:chr1:4027576-4027814 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-32
               
               
               Alignm gaps (pig, cow):37, 226

               
               
               Conread position:627-862
               
               
               Cow position:chr1:60907078-60907322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):35, 237

               
               
               Conread position:628-754
               
               
               Cow position:chr1:29451592-29451719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:99
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:628-764
               
               
               Cow position:chr1:634909-635046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:628-838
               
               
               Cow position:chr1:1956612-1956403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):23, 136

               
               
               Conread position:628-866
               
               
               Cow position:chr1:81911882-81911641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:628-867
               
               
               Cow position:chr1:9413721-9413963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:629-764
               
               
               Cow position:chr1:92976922-92976787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:104
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:630-829
               
               
               Cow position:chr1:47072656-47072456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):37, 5

               
               
               Conread position:631-823
               
               
               Cow position:chr1:72653418-72653612 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:631-853
               
               
               Cow position:chr1:98708164-98708380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:157
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):23, 15

               
               
               Conread position:632-860
               
               
               Cow position:chr1:72286327-72286110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:633-861
               
               
               Cow position:chr1:42968591-42968368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):205, 27

               
               
               Conread position:633-868
               
               
               Cow position:chr1:33719837-33720075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):29, 49

               
               
               Conread position:634-837
               
               
               Cow position:chr1:43878588-43878384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):29, 58

               
               
               Conread position:634-850
               
               
               Cow position:chr1:32631193-32631404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:634-859
               
               
               Cow position:chr1:84786495-84786721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):28, 48

               
               
               Conread position:635-860
               
               
               Cow position:chr1:99095090-99095309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-30
               
               
               Alignm gaps (pig, cow):178, 25

               
               
               Conread position:636-860
               
               
               Cow position:chr1:31348187-31347969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:637-854
               
               
               Cow position:chr1:55686492-55686276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:637-854
               
               
               Cow position:chr1:89510205-89509982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):24, 45

               
               
               Conread position:638-823
               
               
               Cow position:chr1:10742934-10742746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:638-862
               
               
               Cow position:chr1:92437263-92437048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):24, 129

               
               
               Conread position:639-862
               
               
               Cow position:chr1:43839256-43839476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 120

               
               
               Conread position:640-822
               
               
               Cow position:chr1:61742238-61742059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:136
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):22, 107

               
               
               Conread position:640-854
               
               
               Cow position:chr1:46940132-46939918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:160
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):22, 111

               
               
               Conread position:641-854
               
               
               Cow position:chr1:99609098-99609309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):9, 20

               
               
               Conread position:643-854
               
               
               Cow position:chr1:97820420-97820628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):160, 17

               
               
               Conread position:644-862
               
               
               Cow position:chr1:95050363-95050145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):5, 31

               
               
               Conread position:645-837
               
               
               Cow position:chr1:13614984-13614789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:136
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:646-838
               
               
               Cow position:chr1:60707139-60707334 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):16, 113

               
               
               Conread position:647-808
               
               
               Cow position:chr1:1348087-1347929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):11, 132

               
               
               Conread position:647-862
               
               
               Cow position:chr1:90864563-90864345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):15, 211

               
               
               Conread position:648-762
               
               
               Cow position:chr1:6961617-6961731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):112, 33

               
               
               Conread position:648-851
               
               
               Cow position:chr1:29935641-29935443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:648-852
               
               
               Cow position:chr1:96713074-96712872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):154, 12

               
               
               Conread position:648-861
               
               
               Cow position:chr1:50679547-50679336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 118

               
               
               Conread position:649-837
               
               
               Cow position:chr1:197263-197080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):13, 55

               
               
               Conread position:649-850
               
               
               Cow position:chr1:97620099-97619900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):62, 11

               
               
               Conread position:649-854
               
               
               Cow position:chr1:71295569-71295365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):14, 51

               
               
               Conread position:649-858
               
               
               Cow position:chr1:41252664-41252456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):13, 162

               
               
               Conread position:649-859
               
               
               Cow position:chr1:19545354-19545153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):157, 11

               
               
               Conread position:649-859
               
               
               Cow position:chr1:95327412-95327205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):159, 11

               
               
               Conread position:649-860
               
               
               Cow position:chr1:19998294-19998094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:649-860
               
               
               Cow position:chr1:55146542-55146749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:649-860
               
               
               Cow position:chr1:71818722-71818511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):166, 155

               
               
               Conread position:649-860
               
               
               Cow position:chr1:75744601-75744807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):166, 11

               
               
               Conread position:649-860
               
               
               Cow position:chr1:79165351-79165138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:649-861
               
               
               Cow position:chr1:21835685-21835893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):11, 115

               
               
               Conread position:649-861
               
               
               Cow position:chr1:72141305-72141511 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:153
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):53, 11

               
               
               Conread position:649-868
               
               
               Cow position:chr1:54478063-54478281 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:9e-31
               
               
               Alignm gaps (pig, cow):38, 11

               
               
               Conread position:649-869
               
               
               Cow position:chr1:82338044-82337823 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):33, 11

               
               
               Conread position:650-805
               
               
               Cow position:chr1:100537552-100537708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:115
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:650-851
               
               
               Cow position:chr1:56748330-56748532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:4e-33
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:650-852
               
               
               Cow position:chr1:51628762-51628560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:147
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):12, 177

               
               
               Conread position:650-860
               
               
               Cow position:chr1:6941206-6941409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:650-860
               
               
               Cow position:chr1:6958619-6958822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):12, 37

               
               
               Conread position:650-860
               
               
               Cow position:chr1:34856887-34856684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):176, 10

               
               
               Conread position:650-860
               
               
               Cow position:chr1:45535444-45535652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:156
               
               
               Alignm E-value:4e-34
               
               
               Alignm gaps (pig, cow):159, 10

               
               
               Conread position:650-860
               
               
               Cow position:chr1:68827163-68826958 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):114, 10

               
               
               Conread position:650-864
               
               
               Cow position:chr1:57635207-57635415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:652-799
               
               
               Cow position:chr1:40292220-40292076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):116, 8

               
               
               Conread position:652-849
               
               
               Cow position:chr1:3757696-3757892 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):156, 10

               
               
               Conread position:652-860
               
               
               Cow position:chr1:97806536-97806735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-30
               
               
               Alignm gaps (pig, cow):157, 9

               
               
               Conread position:655-858
               
               
               Cow position:chr1:3776867-3776667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):149, 5

               
               
               Conread position:655-860
               
               
               Cow position:chr1:11770546-11770343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):160, 5

               
               
               Conread position:660-833
               
               
               Cow position:chr1:95071737-95071904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:660-849
               
               
               Cow position:chr1:36931910-36932093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):149, 93

               
               
               Conread position:660-852
               
               
               Cow position:chr1:81563484-81563675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:135
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):155, 55

               
               
               Conread position:660-853
               
               
               Cow position:chr1:78810787-78810979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:660-858
               
               
               Cow position:chr1:37707218-37707023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):131, 144

               
               
               Conread position:660-860
               
               
               Cow position:chr1:13413778-13413976 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:660-860
               
               
               Cow position:chr1:24655711-24655910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-32
               
               
               Alignm gaps (pig, cow):143, 40

               
               
               Conread position:660-860
               
               
               Cow position:chr1:56657792-56657979 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:660-862
               
               
               Cow position:chr1:89395342-89395549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):22, 200

               
               
               Conread position:660-873
               
               
               Cow position:chr1:43505274-43505484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):155, 85

               
               
               Conread position:661-854
               
               
               Cow position:chr1:70538355-70538548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-26
               
               
               Alignm gaps (pig, cow):154, 143

               
               
               Conread position:661-854
               
               
               Cow position:chr1:78857570-78857381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):151, 20

               
               
               Conread position:661-858
               
               
               Cow position:chr1:52994776-52994971 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-27
               
               
               Alignm gaps (pig, cow):172, 20

               
               
               Conread position:663-837
               
               
               Cow position:chr1:71253801-71253629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):111, 95

               
               
               Conread position:663-853
               
               
               Cow position:chr1:51531527-51531707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):148, 73

               
               
               Conread position:664-860
               
               
               Cow position:chr1:71119266-71119463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):143, 69

               
               
               Conread position:665-859
               
               
               Cow position:chr1:88618348-88618541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:139
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):22, 112

               
               
               Conread position:665-860
               
               
               Cow position:chr1:30504227-30504418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-29
               
               
               Alignm gaps (pig, cow):150, 16

               
               
               Conread position:665-869
               
               
               Cow position:chr1:51445635-51445838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:149
               
               
               Alignm E-value:7e-28
               
               
               Alignm gaps (pig, cow):150, 96

               
               
               Conread position:666-851
               
               
               Cow position:chr1:97611896-97611715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-20
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:667-833
               
               
               Cow position:chr1:25281918-25281756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):145, 94

               
               
               Conread position:668-854
               
               
               Cow position:chr1:31235175-31234986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:668-869
               
               
               Cow position:chr1:20287876-20288077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-23
               
               
               Alignm gaps (pig, cow):147, 13

               
               
               Conread position:669-854
               
               
               Cow position:chr1:95056815-95056996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:131
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):143, 92

               
               
               Conread position:669-860
               
               
               Cow position:chr1:44506728-44506915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:138
               
               
               Alignm E-value:5e-25
               
               
               Alignm gaps (pig, cow):146, 34

               
               
               Conread position:711-860
               
               
               Cow position:chr1:51654212-51654358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:113
               
               
               Alignm E-value:4e-22
               
               
               Alignm gaps (pig, cow):104, 42
Show alignments to all cow chromosomes.
Conread position:	178-688
Cow position:	chr1:90101516-90100998 (view UCSC Genome Browser custom track)
Alignm length:	521
Alignm identity:	189
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	245, 474
Conread position:	377-745
Cow position:	chr1:21678621-21678978 (view UCSC Genome Browser custom track)
Alignm length:	371
Alignm identity:	255
Alignm E-value:	4.2039e-45
Alignm gaps (pig, cow):	27, 16
Conread position:	381-754
Cow position:	chr1:85527462-85527080 (view UCSC Genome Browser custom track)
Alignm length:	384
Alignm identity:	247
Alignm E-value:	1e-32
Alignm gaps (pig, cow):	8, 309
Conread position:	394-762
Cow position:	chr1:92433503-92433871 (view UCSC Genome Browser custom track)
Alignm length:	372
Alignm identity:	270
Alignm E-value:	0
Alignm gaps (pig, cow):	24, 225
Conread position:	395-611
Cow position:	chr1:56644153-56643931 (view UCSC Genome Browser custom track)
Alignm length:	223
Alignm identity:	163
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	19, 0
Conread position:	395-644
Cow position:	chr1:23973506-23973758 (view UCSC Genome Browser custom track)
Alignm length:	253
Alignm identity:	169
Alignm E-value:	2e-28
Alignm gaps (pig, cow):	25, 0
Conread position:	395-871
Cow position:	chr1:17008996-17008513 (view UCSC Genome Browser custom track)
Alignm length:	485
Alignm identity:	335
Alignm E-value:	0
Alignm gaps (pig, cow):	21, 146
Conread position:	396-660
Cow position:	chr1:86020609-86020339 (view UCSC Genome Browser custom track)
Alignm length:	273
Alignm identity:	190
Alignm E-value:	4e-34
Alignm gaps (pig, cow):	20, 54
Conread position:	397-668
Cow position:	chr1:22778112-22777832 (view UCSC Genome Browser custom track)
Alignm length:	288
Alignm identity:	199
Alignm E-value:	5e-26
Alignm gaps (pig, cow):	107, 6
Conread position:	398-691
Cow position:	chr1:89547696-89548001 (view UCSC Genome Browser custom track)
Alignm length:	307
Alignm identity:	212
Alignm E-value:	1e-34
Alignm gaps (pig, cow):	133, 275
Conread position:	401-669
Cow position:	chr1:57888806-57889067 (view UCSC Genome Browser custom track)
Alignm length:	270
Alignm identity:	206
Alignm E-value:	0
Alignm gaps (pig, cow):	261, 19
Conread position:	408-860
Cow position:	chr1:64818392-64817938 (view UCSC Genome Browser custom track)
Alignm length:	456
Alignm identity:	325
Alignm E-value:	0
Alignm gaps (pig, cow):	139, 129
Conread position:	411-823
Cow position:	chr1:87240182-87239769 (view UCSC Genome Browser custom track)
Alignm length:	419
Alignm identity:	292
Alignm E-value:	0
Alignm gaps (pig, cow):	9, 27
Conread position:	414-624
Cow position:	chr1:46940196-46940407 (view UCSC Genome Browser custom track)
Alignm length:	212
Alignm identity:	159
Alignm E-value:	8e-40
Alignm gaps (pig, cow):	136, 0
Conread position:	414-640
Cow position:	chr1:12804454-12804680 (view UCSC Genome Browser custom track)
Alignm length:	231
Alignm identity:	175
Alignm E-value:	3.00004e-41
Alignm gaps (pig, cow):	66, 126
Conread position:	414-649
Cow position:	chr1:55146044-55146283 (view UCSC Genome Browser custom track)
Alignm length:	242
Alignm identity:	184
Alignm E-value:	9.80909e-45
Alignm gaps (pig, cow):	114, 144
Conread position:	414-752
Cow position:	chr1:73225472-73225824 (view UCSC Genome Browser custom track)
Alignm length:	355
Alignm identity:	223
Alignm E-value:	3e-21
Alignm gaps (pig, cow):	51, 44
Conread position:	414-820
Cow position:	chr1:9438041-9437642 (view UCSC Genome Browser custom track)
Alignm length:	408
Alignm identity:	279
Alignm E-value:	0
Alignm gaps (pig, cow):	246, 50
Conread position:	414-823
Cow position:	chr1:77177357-77176945 (view UCSC Genome Browser custom track)
Alignm length:	414
Alignm identity:	300
Alignm E-value:	0
Alignm gaps (pig, cow):	7, 124
Conread position:	414-837
Cow position:	chr1:58419428-58419861 (view UCSC Genome Browser custom track)
Alignm length:	436
Alignm identity:	314
Alignm E-value:	0
Alignm gaps (pig, cow):	23, 127