Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 1-962 |
| Cow position: | chr1:80617622-80616645 (view UCSC Genome Browser custom track) |
| Alignm length: | 993 |
| Alignm identity: | 810 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 345 |
| Conread position: | 827-962 |
| Cow position: | chr1:87000106-86999969 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 827-1086 |
| Cow position: | chr1:42745970-42745710 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 54, 144 |
| Conread position: | 830-1124 |
| Cow position: | chr1:52196673-52196380 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 58 |
| Conread position: | 833-999 |
| Cow position: | chr1:20095240-20095070 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 835-1045 |
| Cow position: | chr1:32509300-32509512 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 45, 105 |
| Conread position: | 837-1078 |
| Cow position: | chr1:10960561-10960799 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 127, 90 |
| Conread position: | 848-1124 |
| Cow position: | chr1:41580026-41580310 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 35, 82 |
| Conread position: | 849-1122 |
| Cow position: | chr1:100911206-100911482 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 150 |
| Conread position: | 849-1126 |
| Cow position: | chr1:77429815-77429537 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 38, 82 |
| Conread position: | 850-1124 |
| Cow position: | chr1:58801481-58801769 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 30, 233 |
| Conread position: | 851-1060 |
| Cow position: | chr1:10995870-10995656 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 851-1124 |
| Cow position: | chr1:64903740-64904023 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 32, 221 |
| Conread position: | 852-1070 |
| Cow position: | chr1:20108428-20108208 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 24, 114 |
| Conread position: | 852-1136 |
| Cow position: | chr1:57186098-57185817 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 121, 104 |
| Conread position: | 867-1028 |
| Cow position: | chr1:15911828-15911990 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 92 |
| Conread position: | 874-1124 |
| Cow position: | chr1:32222507-32222241 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 89, 14 |
| Conread position: | 874-1130 |
| Cow position: | chr1:89402002-89401738 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 12, 178 |
| Conread position: | 879-1072 |
| Cow position: | chr1:42576974-42576783 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 84, 123 |
| Conread position: | 880-1040 |
| Cow position: | chr1:26826269-26826115 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 93, 47 |
| Conread position: | 881-1022 |
| Cow position: | chr1:48418430-48418290 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 881-1058 |
| Cow position: | chr1:81752390-81752562 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 881-1104 |
| Cow position: | chr1:79211002-79210784 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 63, 25 |
| Conread position: | 881-1122 |
| Cow position: | chr1:85322759-85322995 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 881-1124 |
| Cow position: | chr1:11048360-11048124 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 886-1092 |
| Cow position: | chr1:88724417-88724620 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 906-1126 |
| Cow position: | chr1:92401195-92400975 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 52, 79 |
| Conread position: | 933-1131 |
| Cow position: | chr1:30310555-30310751 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 934-1077 |
| Cow position: | chr1:26439997-26439853 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 934-1118 |
| Cow position: | chr1:78943027-78942835 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 934-1123 |
| Cow position: | chr1:36266450-36266260 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 934-1123 |
| Cow position: | chr1:36275225-36275424 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 22 |
| Conread position: | 934-1124 |
| Cow position: | chr1:3830654-3830845 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 934-1127 |
| Cow position: | chr1:17915487-17915679 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 173, 32 |
| Conread position: | 934-1131 |
| Cow position: | chr1:44202948-44202750 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 142 |
| Conread position: | 934-1152 |
| Cow position: | chr1:62797827-62798042 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 30, 114 |
| Conread position: | 934-1980 |
| Cow position: | chr1:80616641-80615556 (view UCSC Genome Browser custom track) |
| Alignm length: | 1107 |
| Alignm identity: | 855 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 100 |
| Conread position: | 935-1072 |
| Cow position: | chr1:51590082-51589944 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 935-1101 |
| Cow position: | chr1:48940247-48940081 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 936-1099 |
| Cow position: | chr1:62050293-62050457 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 937-1114 |
| Cow position: | chr1:32895193-32895371 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 953-1103 |
| Cow position: | chr1:32843231-32843376 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 136, 10 |
| Conread position: | 969-1106 |
| Cow position: | chr1:87057612-87057476 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 969-1113 |
| Cow position: | chr1:39014403-39014255 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 65, 126 |
| Conread position: | 981-1124 |
| Cow position: | chr1:95174098-95174243 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 24, 103 |
| Conread position: | 985-1121 |
| Cow position: | chr1:26577499-26577361 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 985-1121 |
| Cow position: | chr1:26578614-26578476 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 121, 0 |
Show alignments to all cow chromosomes.