Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 53-293 |
| Cow position: | chr11:23467324-23467095 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 827-1008 |
| Cow position: | chr11:19722841-19722661 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 40, 134 |
| Conread position: | 828-963 |
| Cow position: | chr11:387662-387527 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 837-1048 |
| Cow position: | chr11:45618037-45617825 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 34, 125 |
| Conread position: | 837-1077 |
| Cow position: | chr11:26085564-26085327 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 184 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 136, 37 |
| Conread position: | 837-1106 |
| Cow position: | chr11:74915938-74915667 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 837-1123 |
| Cow position: | chr11:16210610-16210309 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 847-1119 |
| Cow position: | chr11:62035116-62034848 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 116, 27 |
| Conread position: | 849-1132 |
| Cow position: | chr11:69192659-69192941 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 31, 174 |
| Conread position: | 850-992 |
| Cow position: | chr11:27644044-27644189 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 851-1110 |
| Cow position: | chr11:20555859-20555602 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 7, 15 |
| Conread position: | 851-1129 |
| Cow position: | chr11:84783587-84783876 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 19, 25 |
| Conread position: | 853-1127 |
| Cow position: | chr11:32790086-32789805 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 28, 244 |
| Conread position: | 858-1132 |
| Cow position: | chr11:34039509-34039799 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 880-1123 |
| Cow position: | chr11:55386319-55386562 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 84, 74 |
| Conread position: | 881-1058 |
| Cow position: | chr11:12987143-12987315 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 80 |
| Conread position: | 881-1120 |
| Cow position: | chr11:43062568-43062327 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 82, 196 |
| Conread position: | 881-1121 |
| Cow position: | chr11:43078278-43078031 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 83, 68 |
| Conread position: | 881-1123 |
| Cow position: | chr11:78330573-78330818 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 91 |
| Conread position: | 881-1138 |
| Cow position: | chr11:82530619-82530366 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 39, 32 |
| Conread position: | 882-1123 |
| Cow position: | chr11:34443537-34443781 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 187 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 201 |
| Conread position: | 882-1130 |
| Cow position: | chr11:29966081-29965827 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 88, 82 |
| Conread position: | 890-1092 |
| Cow position: | chr11:37935880-37936080 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 39 |
| Conread position: | 892-1126 |
| Cow position: | chr11:2772210-2771970 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 10, 210 |
| Conread position: | 898-1060 |
| Cow position: | chr11:62702033-62702197 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 902-1118 |
| Cow position: | chr11:21329710-21329920 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 15, 37 |
| Conread position: | 910-1117 |
| Cow position: | chr11:16821457-16821253 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 934-1104 |
| Cow position: | chr11:16102266-16102097 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 934-1118 |
| Cow position: | chr11:24209705-24209893 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 934-1123 |
| Cow position: | chr11:73308435-73308629 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 37, 155 |
| Conread position: | 934-1124 |
| Cow position: | chr11:8173018-8173208 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 934-1131 |
| Cow position: | chr11:17243400-17243207 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 41, 30 |
| Conread position: | 950-1129 |
| Cow position: | chr11:43769111-43769290 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 113 |
| Conread position: | 972-1118 |
| Cow position: | chr11:72937450-72937306 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 107, 28 |
Show alignments to all cow chromosomes.