Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 827-1040 |
| Cow position: | chr12:20088070-20088281 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 827-1124 |
| Cow position: | chr12:33465144-33465438 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 34, 46 |
| Conread position: | 837-1077 |
| Cow position: | chr12:2238078-2237844 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 129, 59 |
| Conread position: | 837-1122 |
| Cow position: | chr12:47786366-47786644 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 125, 94 |
| Conread position: | 837-1142 |
| Cow position: | chr12:26280869-26281171 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 24 |
| Conread position: | 846-1076 |
| Cow position: | chr12:16723080-16722845 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 848-1104 |
| Cow position: | chr12:26039605-26039340 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 849-1077 |
| Cow position: | chr12:47811930-47812157 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 849-1106 |
| Cow position: | chr12:42481827-42481570 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 850-1104 |
| Cow position: | chr12:9598337-9598592 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 40 |
| Conread position: | 850-1119 |
| Cow position: | chr12:29295803-29295530 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 850-1126 |
| Cow position: | chr12:6113921-6113656 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 252, 111 |
| Conread position: | 866-1103 |
| Cow position: | chr12:38662736-38662492 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 220 |
| Conread position: | 879-1077 |
| Cow position: | chr12:33894354-33894155 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 19, 86 |
| Conread position: | 882-1124 |
| Cow position: | chr12:38397911-38397674 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 199, 44 |
| Conread position: | 883-1031 |
| Cow position: | chr12:18061165-18061313 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 88, 9 |
| Conread position: | 884-1118 |
| Cow position: | chr12:2819255-2819488 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 37, 152 |
| Conread position: | 934-1122 |
| Cow position: | chr12:16170967-16171155 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 173, 30 |
| Conread position: | 934-1124 |
| Cow position: | chr12:791076-790885 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 38, 148 |
| Conread position: | 935-1080 |
| Cow position: | chr12:16130542-16130684 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 140, 28 |
| Conread position: | 938-1092 |
| Cow position: | chr12:38395581-38395426 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 20 |
| Conread position: | 947-1097 |
| Cow position: | chr12:32005082-32004930 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 136 |
| Conread position: | 949-1124 |
| Cow position: | chr12:46078854-46079030 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 87 |
| Conread position: | 969-1101 |
| Cow position: | chr12:46106960-46107093 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 981-1121 |
| Cow position: | chr12:30405352-30405493 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 121, 100 |
Show alignments to all cow chromosomes.