Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 786-1009 |
| Cow position: | chr3:17035519-17035292 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 12 |
| Conread position: | 827-991 |
| Cow position: | chr3:1748103-1748269 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 827-1122 |
| Cow position: | chr3:39918110-39917823 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 137, 65 |
| Conread position: | 831-1124 |
| Cow position: | chr3:7531541-7531257 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 53, 96 |
| Conread position: | 835-962 |
| Cow position: | chr3:58193644-58193518 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 835-1105 |
| Cow position: | chr3:13683299-13683564 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 129, 55 |
| Conread position: | 835-1124 |
| Cow position: | chr3:37361999-37361709 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 45, 84 |
| Conread position: | 837-1048 |
| Cow position: | chr3:77193552-77193764 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 837-1077 |
| Cow position: | chr3:77649565-77649812 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 120, 0 |
| Conread position: | 837-1079 |
| Cow position: | chr3:41756174-41756411 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 89 |
| Conread position: | 837-1086 |
| Cow position: | chr3:59955110-59955358 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 42, 78 |
| Conread position: | 837-1106 |
| Cow position: | chr3:43839655-43839923 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 46, 202 |
| Conread position: | 837-1119 |
| Cow position: | chr3:1348823-1348534 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 25 |
| Conread position: | 837-1122 |
| Cow position: | chr3:4343878-4344157 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 265, 44 |
| Conread position: | 837-1136 |
| Cow position: | chr3:18467078-18466776 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 129 |
| Conread position: | 845-1127 |
| Cow position: | chr3:43222258-43222532 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 83, 47 |
| Conread position: | 849-1044 |
| Cow position: | chr3:40722368-40722155 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 849-1071 |
| Cow position: | chr3:24201436-24201659 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 31, 85 |
| Conread position: | 849-1077 |
| Cow position: | chr3:43973927-43974153 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 59, 184 |
| Conread position: | 851-1028 |
| Cow position: | chr3:2561690-2561515 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 121, 37 |
| Conread position: | 853-1080 |
| Cow position: | chr3:41565233-41565461 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 25, 162 |
| Conread position: | 853-1124 |
| Cow position: | chr3:75505112-75504839 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 27, 81 |
| Conread position: | 858-1123 |
| Cow position: | chr3:76773918-76774178 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 109 |
| Conread position: | 878-1099 |
| Cow position: | chr3:21052667-21052458 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 84, 47 |
| Conread position: | 879-1104 |
| Cow position: | chr3:27346100-27345879 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 84, 135 |
| Conread position: | 880-1027 |
| Cow position: | chr3:77496921-77497067 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 881-1010 |
| Cow position: | chr3:60618951-60619081 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 881-1019 |
| Cow position: | chr3:50911736-50911875 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 881-1077 |
| Cow position: | chr3:44404328-44404134 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 881-1078 |
| Cow position: | chr3:10044335-10044130 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 57, 140 |
| Conread position: | 881-1124 |
| Cow position: | chr3:28710736-28710977 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 205, 77 |
| Conread position: | 883-1048 |
| Cow position: | chr3:66266713-66266875 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 89, 13 |
| Conread position: | 918-1124 |
| Cow position: | chr3:10622225-10622433 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 26, 165 |
| Conread position: | 936-1113 |
| Cow position: | chr3:31580922-31580747 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 942-1124 |
| Cow position: | chr3:34181803-34181989 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 950-1097 |
| Cow position: | chr3:41440941-41441087 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 14, 113 |
| Conread position: | 966-1124 |
| Cow position: | chr3:62334137-62334296 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 148, 112 |
| Conread position: | 969-1123 |
| Cow position: | chr3:20016520-20016684 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 969-1127 |
| Cow position: | chr3:43677284-43677443 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 128 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 137, 109 |
| Conread position: | 969-1127 |
| Cow position: | chr3:46574575-46574416 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 117, 36 |
| Conread position: | 970-1124 |
| Cow position: | chr3:41954081-41953927 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 138, 74 |
Show alignments to all cow chromosomes.