Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 827-1073 |
| Cow position: | chr4:7667522-7667277 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 827-1123 |
| Cow position: | chr4:24827302-24827002 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 157 |
| Conread position: | 827-1124 |
| Cow position: | chr4:56405531-56405842 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 53, 137 |
| Conread position: | 837-1060 |
| Cow position: | chr4:56843111-56842883 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 844-1021 |
| Cow position: | chr4:43383734-43383905 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 18, 32 |
| Conread position: | 846-1126 |
| Cow position: | chr4:43407118-43406832 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 34, 237 |
| Conread position: | 850-1061 |
| Cow position: | chr4:1419720-1419935 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 22, 111 |
| Conread position: | 850-1097 |
| Cow position: | chr4:45687424-45687672 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 154 |
| Conread position: | 852-1123 |
| Cow position: | chr4:45697816-45697535 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 120 |
| Conread position: | 875-1044 |
| Cow position: | chr4:12257434-12257264 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 876-1119 |
| Cow position: | chr4:49364706-49364460 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 97, 49 |
| Conread position: | 880-1060 |
| Cow position: | chr4:58354679-58354506 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 148, 77 |
| Conread position: | 881-1077 |
| Cow position: | chr4:63627471-63627662 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 92, 69 |
| Conread position: | 881-1118 |
| Cow position: | chr4:40298087-40297848 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 74, 49 |
| Conread position: | 888-1123 |
| Cow position: | chr4:13421573-13421335 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 76, 61 |
| Conread position: | 902-1123 |
| Cow position: | chr4:28563998-28563774 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 31 |
| Conread position: | 933-1089 |
| Cow position: | chr4:61477143-61476986 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 933-1132 |
| Cow position: | chr4:47943714-47943919 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 934-1077 |
| Cow position: | chr4:61060376-61060521 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 934-1078 |
| Cow position: | chr4:27476187-27476332 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 934-1110 |
| Cow position: | chr4:7434403-7434579 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 934-1123 |
| Cow position: | chr4:65909073-65909264 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 934-1124 |
| Cow position: | chr4:12602048-12601856 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 37, 152 |
| Conread position: | 934-1124 |
| Cow position: | chr4:38056362-38056178 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 174, 30 |
| Conread position: | 934-1131 |
| Cow position: | chr4:51928944-51928743 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 947-1121 |
| Cow position: | chr4:12258961-12259138 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 949-1123 |
| Cow position: | chr4:13470172-13470349 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 119 |
| Conread position: | 969-1107 |
| Cow position: | chr4:48226798-48226663 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 969-1123 |
| Cow position: | chr4:34501675-34501520 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 130, 109 |
| Conread position: | 969-1137 |
| Cow position: | chr4:13374311-13374481 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 981-1119 |
| Cow position: | chr4:37685274-37685419 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 100, 0 |
Show alignments to all cow chromosomes.