Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 827-962 |
| Cow position: | chr5:1251489-1251350 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 827-1108 |
| Cow position: | chr5:51767782-51767497 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 61, 102 |
| Conread position: | 837-1077 |
| Cow position: | chr5:21529587-21529827 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 837-1098 |
| Cow position: | chr5:56870611-56870867 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 34, 11 |
| Conread position: | 837-1124 |
| Cow position: | chr5:18696644-18696352 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 36, 283 |
| Conread position: | 840-1077 |
| Cow position: | chr5:29247117-29246880 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 164 |
| Conread position: | 846-1077 |
| Cow position: | chr5:11605329-11605546 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 166 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 34, 96 |
| Conread position: | 848-1060 |
| Cow position: | chr5:30079568-30079780 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 79 |
| Conread position: | 851-1121 |
| Cow position: | chr5:75358315-75358054 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 29, 81 |
| Conread position: | 852-1077 |
| Cow position: | chr5:18555613-18555391 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 855-1077 |
| Cow position: | chr5:37033521-37033307 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 16, 110 |
| Conread position: | 878-1123 |
| Cow position: | chr5:14775255-14775000 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 100, 83 |
| Conread position: | 879-1119 |
| Cow position: | chr5:21573222-21573461 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 96, 61 |
| Conread position: | 880-1119 |
| Cow position: | chr5:47479607-47479370 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 83, 45 |
| Conread position: | 881-1060 |
| Cow position: | chr5:9522491-9522308 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 83, 164 |
| Conread position: | 881-1119 |
| Cow position: | chr5:4315775-4315538 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 81, 132 |
| Conread position: | 881-1126 |
| Cow position: | chr5:62277052-62276791 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 884-1076 |
| Cow position: | chr5:30474776-30474580 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 77, 90 |
| Conread position: | 934-1117 |
| Cow position: | chr5:23452761-23452582 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 168, 30 |
| Conread position: | 934-1118 |
| Cow position: | chr5:16173901-16174091 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 77 |
| Conread position: | 934-1124 |
| Cow position: | chr5:29425163-29425357 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 934-1124 |
| Cow position: | chr5:32989901-32989717 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 24 |
| Conread position: | 934-1126 |
| Cow position: | chr5:69541231-69541037 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 37, 115 |
| Conread position: | 935-1076 |
| Cow position: | chr5:35457238-35457096 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 35, 29 |
| Conread position: | 935-1124 |
| Cow position: | chr5:54738397-54738206 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 935-1124 |
| Cow position: | chr5:58070531-58070341 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 36, 68 |
| Conread position: | 935-1127 |
| Cow position: | chr5:37915604-37915409 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 23 |
| Conread position: | 938-1104 |
| Cow position: | chr5:5725987-5725820 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 35, 9 |
| Conread position: | 950-1126 |
| Cow position: | chr5:1251341-1251156 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 136 |
| Conread position: | 951-1122 |
| Cow position: | chr5:69069022-69068846 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 59 |
Show alignments to all cow chromosomes.