Cow genome map
| Conread name: | Ss1.1-ruio18_f3.5.5 |
| Conread position: | 825-1124 |
| Cow position: | chr9:10716076-10716370 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 85, 48 |
| Conread position: | 827-996 |
| Cow position: | chr9:10587320-10587486 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 827-1111 |
| Cow position: | chr9:47117711-47117990 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 62, 103 |
| Conread position: | 833-1123 |
| Cow position: | chr9:31501004-31501308 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 242 |
| Conread position: | 834-1124 |
| Cow position: | chr9:34278282-34277981 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 125 |
| Conread position: | 835-1123 |
| Cow position: | chr9:30135439-30135725 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 837-1044 |
| Cow position: | chr9:13501131-13501333 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 136, 25 |
| Conread position: | 837-1060 |
| Cow position: | chr9:33755918-33755689 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 837-1119 |
| Cow position: | chr9:5741848-5742135 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 44, 245 |
| Conread position: | 837-1132 |
| Cow position: | chr9:39791542-39791248 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 12 |
| Conread position: | 838-1104 |
| Cow position: | chr9:43532755-43533025 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 125 |
| Conread position: | 846-1124 |
| Cow position: | chr9:3386818-3387106 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 35, 265 |
| Conread position: | 846-1135 |
| Cow position: | chr9:10733792-10733501 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 34, 121 |
| Conread position: | 849-1119 |
| Cow position: | chr9:5579480-5579746 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 123, 72 |
| Conread position: | 849-1130 |
| Cow position: | chr9:32955178-32954891 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 234 |
| Conread position: | 855-1095 |
| Cow position: | chr9:30210156-30210394 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 108, 60 |
| Conread position: | 860-1105 |
| Cow position: | chr9:64421120-64421362 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 29, 102 |
| Conread position: | 881-1100 |
| Cow position: | chr9:7081081-7081300 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 206, 167 |
| Conread position: | 882-1021 |
| Cow position: | chr9:5153913-5154053 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 885-1060 |
| Cow position: | chr9:17849435-17849611 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 88, 34 |
| Conread position: | 885-1122 |
| Cow position: | chr9:50725225-50725480 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 211 |
| Conread position: | 885-1123 |
| Cow position: | chr9:32727049-32726809 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 118 |
| Conread position: | 933-1104 |
| Cow position: | chr9:34548980-34548814 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 37, 102 |
| Conread position: | 934-1088 |
| Cow position: | chr9:21925518-21925364 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 30 |
| Conread position: | 934-1154 |
| Cow position: | chr9:19598182-19597961 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 159 |
| Conread position: | 934-1159 |
| Cow position: | chr9:31524934-31525163 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 146 |
| Conread position: | 938-1123 |
| Cow position: | chr9:28891593-28891404 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 945-1124 |
| Cow position: | chr9:48818638-48818456 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 949-1118 |
| Cow position: | chr9:40931912-40931744 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 82 |
| Conread position: | 952-1119 |
| Cow position: | chr9:30406026-30405855 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 961-1124 |
| Cow position: | chr9:29009424-29009589 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 139, 0 |
| Conread position: | 978-1122 |
| Cow position: | chr9:60777517-60777371 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 109, 101 |
Show alignments to all cow chromosomes.