Cow genome map

Conread name: Ss1.1-ruio18_f3.5.5

Conread position: 782-1124
Cow position: chrX:2374729-2375059 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 38

Conread position: 801-997
Cow position: chrX:1095582-1095778 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 18

Conread position: 809-1123
Cow position: chrX:4835354-4835672 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 229
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 33

Conread position: 827-1060
Cow position: chrX:398480-398242 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 57, 147

Conread position: 827-1104
Cow position: chrX:23118420-23118698 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 63, 208

Conread position: 827-1139
Cow position: chrX:316309-315980 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 235
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 64, 320

Conread position: 835-1124
Cow position: chrX:27957921-27958211 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 53

Conread position: 837-1000
Cow position: chrX:27719523-27719358 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 125

Conread position: 837-1124
Cow position: chrX:19066646-19066925 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 12

Conread position: 837-1124
Cow position: chrX:23907909-23908197 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 104

Conread position: 837-1127
Cow position: chrX:38533242-38533536 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 81

Conread position: 838-1028
Cow position: chrX:41408338-41408530 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 43, 135

Conread position: 838-1099
Cow position: chrX:30848372-30848111 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 125, 230

Conread position: 838-1123
Cow position: chrX:20948280-20948561 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 41, 60

Conread position: 849-1124
Cow position: chrX:3358842-3359127 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 205
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 38, 48

Conread position: 850-1024
Cow position: chrX:30766209-30766383 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 122, 64

Conread position: 850-1119
Cow position: chrX:6029454-6029187 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 24

Conread position: 851-1101
Cow position: chrX:25044167-25043919 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 852-1085
Cow position: chrX:17875899-17875669 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 66, 46

Conread position: 852-1116
Cow position: chrX:13918231-13918503 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 201
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 34, 222

Conread position: 853-1060
Cow position: chrX:13989390-13989190 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 160
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 120, 28

Conread position: 879-1118
Cow position: chrX:40111563-40111322 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 173
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 85, 34

Conread position: 881-1047
Cow position: chrX:15277579-15277409 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 90, 44

Conread position: 883-1048
Cow position: chrX:8502511-8502676 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 130
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 81, 13

Conread position: 908-1126
Cow position: chrX:7087499-7087724 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 56, 0

Conread position: 934-1098
Cow position: chrX:12717019-12716856 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 30, 134

Conread position: 934-1124
Cow position: chrX:16953538-16953348 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 144
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 155, 27

Conread position: 934-1124
Cow position: chrX:30728343-30728536 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 30, 145

Conread position: 935-1088
Cow position: chrX:22273809-22273659 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 935-1124
Cow position: chrX:33787398-33787588 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 145
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 36, 22

Conread position: 935-1126
Cow position: chrX:42552536-42552355 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 171, 33

Conread position: 969-1150
Cow position: chrX:31732374-31732549 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 137, 74

Conread position: 981-1104
Cow position: chrX:3076996-3077117 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 0

Show alignments to all cow chromosomes.