Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 2-302 |
| Cow position: | chr17:22498849-22498549 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-383 |
| Cow position: | chr17:22452162-22451790 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 102, 18 |
| Conread position: | 11-374 |
| Cow position: | chr17:22589799-22589436 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 21, 8 |
| Conread position: | 15-383 |
| Cow position: | chr17:22499088-22498720 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 241 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 340, 355 |
| Conread position: | 16-384 |
| Cow position: | chr17:22498919-22498551 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 74, 85 |
| Conread position: | 20-384 |
| Cow position: | chr17:22589622-22589258 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 97, 83 |
| Conread position: | 22-381 |
| Cow position: | chr17:22452403-22452044 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 236 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 27-302 |
| Cow position: | chr17:22589447-22589174 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 78, 83 |
| Conread position: | 27-324 |
| Cow position: | chr17:22551777-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 27-332 |
| Cow position: | chr17:22451978-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-335 |
| Cow position: | chr17:22499244-22498936 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 81, 72 |
| Conread position: | 27-335 |
| Cow position: | chr17:22552701-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 83, 77 |
| Conread position: | 27-338 |
| Cow position: | chr17:22552953-22552642 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-383 |
| Cow position: | chr17:22552365-22552009 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 27-383 |
| Cow position: | chr17:22552533-22552177 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 240 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 151, 166 |
| Conread position: | 27-383 |
| Cow position: | chr17:22552617-22552261 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 224, 247 |
| Conread position: | 27-383 |
| Cow position: | chr17:22590119-22589763 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr17:22452062-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 27-384 |
| Cow position: | chr17:22452314-22451957 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 226, 217 |
| Conread position: | 27-384 |
| Cow position: | chr17:22499328-22498971 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-384 |
| Cow position: | chr17:22551861-22551504 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr17:22552029-22551672 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr17:22552113-22551756 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr17:22552281-22551924 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 27-384 |
| Cow position: | chr17:22552449-22552092 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 80, 70 |
| Conread position: | 27-384 |
| Cow position: | chr17:22552869-22552512 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr17:22553037-22552680 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 28-335 |
| Cow position: | chr17:22589950-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 28-381 |
| Cow position: | chr17:22590034-22589681 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 223 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-382 |
| Cow position: | chr17:22590286-22589932 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 28-383 |
| Cow position: | chr17:22499159-22498804 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 67, 59 |
| Conread position: | 28-383 |
| Cow position: | chr17:22552196-22551841 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 28-384 |
| Cow position: | chr17:22452229-22451873 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 28-384 |
| Cow position: | chr17:22551944-22551588 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 67, 51 |
| Conread position: | 28-384 |
| Cow position: | chr17:22589866-22589510 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-381 |
| Cow position: | chr17:22473571-22473923 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-384 |
| Cow position: | chr17:22473319-22473674 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 248, 236 |
| Conread position: | 30-241 |
| Cow position: | chr17:22473740-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 184, 0 |
| Conread position: | 30-384 |
| Cow position: | chr17:22473488-22473842 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-382 |
| Cow position: | chr17:22590199-22589848 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 45 |
| Conread position: | 31-384 |
| Cow position: | chr17:22473405-22473758 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 65, 48 |
| Conread position: | 44-383 |
| Cow position: | chr17:22589514-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 66, 61 |
| Conread position: | 44-384 |
| Cow position: | chr17:22498975-22498635 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 132, 141 |
| Conread position: | 44-384 |
| Cow position: | chr17:22552768-22552428 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-384 |
| Cow position: | chr17:22473175-22473506 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 53-384 |
| Cow position: | chr17:22499386-22499055 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 223 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 40, 29 |
| Conread position: | 60-384 |
| Cow position: | chr17:22473266-22473590 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-382 |
| Cow position: | chr17:22452400-22452127 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 81, 63 |
| Conread position: | 179-383 |
| Cow position: | chr17:22590303-22590099 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 184-384 |
| Cow position: | chr17:22452409-22452209 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 163, 144 |
Show alignments to all cow chromosomes.