Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-377 |
| Cow position: | chr19:43570014-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 89, 75 |
| Conread position: | 2-383 |
| Cow position: | chr19:23613391-23613772 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-384 |
| Cow position: | chr19:14959196-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 6-384 |
| Cow position: | chr19:23649685-23650063 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 7-384 |
| Cow position: | chr19:14940456-14940833 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-384 |
| Cow position: | chr19:23649854-23650231 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 92 |
| Conread position: | 8-384 |
| Cow position: | chr19:23597330-23597706 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 9-383 |
| Cow position: | chr19:14940208-14940580 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 18 |
| Conread position: | 9-384 |
| Cow position: | chr19:20678085-20678460 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-291 |
| Cow position: | chr19:23614828-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-334 |
| Cow position: | chr19:20677667-20677990 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-338 |
| Cow position: | chr19:23649438-23649765 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 100, 87 |
| Conread position: | 11-380 |
| Cow position: | chr19:20635413-20635044 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 11-383 |
| Cow position: | chr19:23614156-23614528 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 99, 91 |
| Conread position: | 11-383 |
| Cow position: | chr19:23614492-23614864 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 68 |
| Conread position: | 11-383 |
| Cow position: | chr19:43570330-43569968 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 11-384 |
| Cow position: | chr19:20678255-20678628 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 92, 76 |
| Conread position: | 11-384 |
| Cow position: | chr19:23597081-23597454 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 244, 258 |
| Conread position: | 11-384 |
| Cow position: | chr19:23613820-23614193 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 91 |
| Conread position: | 11-384 |
| Cow position: | chr19:43570088-43569717 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 162, 177 |
| Conread position: | 11-384 |
| Cow position: | chr19:43570172-43569799 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 13-384 |
| Cow position: | chr19:20635663-20635292 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-335 |
| Cow position: | chr19:14916020-14916335 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 280, 117 |
| Conread position: | 16-339 |
| Cow position: | chr19:14940717-14941040 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 210 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 94, 81 |
| Conread position: | 16-383 |
| Cow position: | chr19:23613741-23614108 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 246 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 165, 175 |
| Conread position: | 16-384 |
| Cow position: | chr19:23614581-23614949 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 240 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-302 |
| Cow position: | chr19:14960167-14959882 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 8, 87 |
| Conread position: | 20-384 |
| Cow position: | chr19:14960414-14960052 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 85 |
| Conread position: | 20-384 |
| Cow position: | chr19:23614333-23614697 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 152, 160 |
| Conread position: | 27-223 |
| Cow position: | chr19:23597517-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 134, 147 |
| Conread position: | 27-246 |
| Cow position: | chr19:14916198-14916414 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 27-253 |
| Cow position: | chr19:14948231-14948005 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 27-254 |
| Cow position: | chr19:23650210-23650437 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-306 |
| Cow position: | chr19:14959096-14958817 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-325 |
| Cow position: | chr19:23614088-23614386 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 240 |
| Conread position: | 27-334 |
| Cow position: | chr19:14948315-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-375 |
| Cow position: | chr19:23614760-23615108 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 250, 239 |
| Conread position: | 27-380 |
| Cow position: | chr19:14960073-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 227 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 133, 138 |
| Conread position: | 27-383 |
| Cow position: | chr19:23597016-23597369 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 27-383 |
| Cow position: | chr19:23614676-23615032 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 243 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 27-383 |
| Cow position: | chr19:43570240-43569884 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 69 |
| Conread position: | 27-384 |
| Cow position: | chr19:14940308-14940665 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 238 |
| Conread position: | 27-384 |
| Cow position: | chr19:14940392-14940749 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 27-384 |
| Cow position: | chr19:14960239-14959884 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 27-384 |
| Cow position: | chr19:23597265-23597622 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 245, 238 |
| Conread position: | 27-384 |
| Cow position: | chr19:23613584-23613941 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 27-384 |
| Cow position: | chr19:23613920-23614277 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr19:23614256-23614613 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-384 |
| Cow position: | chr19:23650042-23650399 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 28-335 |
| Cow position: | chr19:23650127-23650434 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-383 |
| Cow position: | chr19:14948398-14948043 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 237 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 247, 256 |
| Conread position: | 28-383 |
| Cow position: | chr19:23613669-23614024 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 51 |
| Conread position: | 28-384 |
| Cow position: | chr19:14959257-14958907 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 13 |
| Conread position: | 28-384 |
| Cow position: | chr19:14959666-14959312 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 234, 24 |
| Conread position: | 28-384 |
| Cow position: | chr19:23596933-23597286 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 28-384 |
| Cow position: | chr19:23614425-23614781 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 312 |
| Conread position: | 28-384 |
| Cow position: | chr19:23649623-23649979 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-384 |
| Cow position: | chr19:23649959-23650315 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-236 |
| Cow position: | chr19:20635227-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-339 |
| Cow position: | chr19:14948480-14948171 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 30-302 |
| Cow position: | chr19:14959582-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 30-383 |
| Cow position: | chr19:14940059-14940412 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-383 |
| Cow position: | chr19:14940143-14940496 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-384 |
| Cow position: | chr19:20678022-20678376 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 164 |
| Conread position: | 30-384 |
| Cow position: | chr19:23649289-23649643 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-335 |
| Cow position: | chr19:20678359-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 84, 76 |
| Conread position: | 31-338 |
| Cow position: | chr19:20635477-20635170 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 145, 149 |
| Conread position: | 31-383 |
| Cow position: | chr19:20677939-20678291 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 31-384 |
| Cow position: | chr19:14940648-14941001 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 231 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-384 |
| Cow position: | chr19:20677771-20678124 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 31-384 |
| Cow position: | chr19:23614008-23614361 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 323, 318 |
| Conread position: | 33-384 |
| Cow position: | chr19:23613506-23613857 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-384 |
| Cow position: | chr19:20677606-20677956 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-383 |
| Cow position: | chr19:23649380-23649726 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 39-384 |
| Cow position: | chr19:43570467-43570135 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 227 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 54, 22 |
| Conread position: | 43-384 |
| Cow position: | chr19:23613346-23613689 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 299 |
| Conread position: | 44-367 |
| Cow position: | chr19:20635296-20634972 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 44-384 |
| Cow position: | chr19:14939989-14940329 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 44-384 |
| Cow position: | chr19:20635548-20635208 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-348 |
| Cow position: | chr19:14915964-14916266 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 40, 162 |
| Conread position: | 47-383 |
| Cow position: | chr19:20677535-20677871 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 48-380 |
| Cow position: | chr19:23597202-23597534 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-383 |
| Cow position: | chr19:20677457-20677787 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 119, 141 |
| Conread position: | 127-384 |
| Cow position: | chr19:14939988-14940245 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 219, 212 |
Show alignments to all cow chromosomes.