Cow genome map

Conread name: Ss1.1-ruio22_o15.5

Conread position: 1-223
Cow position:
Alignm length: 225
Alignm identity: 157
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 91, 78

Conread position: 1-338
Cow position:
Alignm length: 339
Alignm identity: 212
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 21

Conread position: 1-383
Cow position:
Alignm length: 383
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-383
Cow position:
Alignm length: 384
Alignm identity: 249
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 109, 87

Conread position: 1-383
Cow position:
Alignm length: 385
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 75

Conread position: 1-383
Cow position:
Alignm length: 383
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-384
Cow position:
Alignm length: 384
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-380
Cow position:
Alignm length: 379
Alignm identity: 247
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 107, 94

Conread position: 5-338
Cow position:
Alignm length: 336
Alignm identity: 225
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 41, 51

Conread position: 6-219
Cow position:
Alignm length: 214
Alignm identity: 139
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 7-338
Cow position:
Alignm length: 333
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 257

Conread position: 7-383
Cow position:
Alignm length: 377
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-383
Cow position:
Alignm length: 380
Alignm identity: 240
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 103, 72

Conread position: 7-384
Cow position:
Alignm length: 380
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 72

Conread position: 7-384
Cow position:
Alignm length: 379
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 72

Conread position: 7-384
Cow position:
Alignm length: 379
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 96

Conread position: 8-384
Cow position:
Alignm length: 378
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 35

Conread position: 9-319
Cow position:
Alignm length: 316
Alignm identity: 198
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 7, 72

Conread position: 11-384
Cow position:
Alignm length: 375
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 76

Conread position: 14-302
Cow position:
Alignm length: 289
Alignm identity: 195
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 15-306
Cow position:
Alignm length: 293
Alignm identity: 181
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 86

Conread position: 16-384
Cow position:
Alignm length: 370
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 71

Conread position: 16-384
Cow position:
Alignm length: 370
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 63

Conread position: 17-335
Cow position:
Alignm length: 322
Alignm identity: 200
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 62

Conread position: 21-383
Cow position:
Alignm length: 364
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 233

Conread position: 24-335
Cow position:
Alignm length: 314
Alignm identity: 194
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 162, 167

Conread position: 27-223
Cow position:
Alignm length: 197
Alignm identity: 133
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 27-253
Cow position:
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 63, 52

Conread position: 27-254
Cow position:
Alignm length: 229
Alignm identity: 152
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 83, 76

Conread position: 27-303
Cow position:
Alignm length: 278
Alignm identity: 189
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 78, 83

Conread position: 27-303
Cow position:
Alignm length: 278
Alignm identity: 188
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 78, 83

Conread position: 27-331
Cow position:
Alignm length: 306
Alignm identity: 209
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 83, 78

Conread position: 27-335
Cow position:
Alignm length: 310
Alignm identity: 202
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 83, 71

Conread position: 27-335
Cow position:
Alignm length: 311
Alignm identity: 200
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 83, 78

Conread position: 27-377
Cow position:
Alignm length: 354
Alignm identity: 233
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 247, 236

Conread position: 27-378
Cow position:
Alignm length: 355
Alignm identity: 218
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 74, 60

Conread position: 27-380
Cow position:
Alignm length: 355
Alignm identity: 236
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 84, 70

Conread position: 27-383
Cow position:
Alignm length: 358
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 312

Conread position: 27-383
Cow position:
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 51

Conread position: 27-383
Cow position:
Alignm length: 358
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 228, 241

Conread position: 27-383
Cow position:
Alignm length: 359
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 26

Conread position: 27-383
Cow position:
Alignm length: 360
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 52

Conread position: 27-383
Cow position:
Alignm length: 360
Alignm identity: 243
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 63, 52

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 308, 326

Conread position: 27-384
Cow position:
Alignm length: 360
Alignm identity: 240
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 83, 69

Conread position: 27-384
Cow position:
Alignm length: 360
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 27-384
Cow position:
Alignm length: 361
Alignm identity: 232
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 149, 153

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 60

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 237

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 230
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 139, 149

Conread position: 27-384
Cow position:
Alignm length: 360
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 158

Conread position: 27-384
Cow position:
Alignm length: 358
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position:
Alignm length: 358
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 64, 52

Conread position: 27-384
Cow position:
Alignm length: 358
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position:
Alignm length: 360
Alignm identity: 234
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 83, 71

Conread position: 27-384
Cow position:
Alignm length: 360
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 71

Conread position: 27-384
Cow position:
Alignm length: 359
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 56

Conread position: 28-253
Cow position:
Alignm length: 227
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 70

Conread position: 28-253
Cow position:
Alignm length: 227
Alignm identity: 159
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 148, 159

Conread position: 28-280
Cow position:
Alignm length: 253
Alignm identity: 159
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 28-335
Cow position:
Alignm length: 310
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 73, 58

Conread position: 28-339
Cow position:
Alignm length: 312
Alignm identity: 210
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 28-383
Cow position:
Alignm length: 358
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 59

Conread position: 28-383
Cow position:
Alignm length: 356
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 28-383
Cow position:
Alignm length: 358
Alignm identity: 239
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 64, 47

Conread position: 28-383
Cow position:
Alignm length: 358
Alignm identity: 235
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 64, 48

Conread position: 28-384
Cow position:
Alignm length: 357
Alignm identity: 228
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 28-384
Cow position:
Alignm length: 358
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 232, 227

Conread position: 29-335
Cow position:
Alignm length: 308
Alignm identity: 206
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 255, 237

Conread position: 29-384
Cow position:
Alignm length: 359
Alignm identity: 239
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 64, 58

Conread position: 29-384
Cow position:
Alignm length: 357
Alignm identity: 228
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 87, 58

Conread position: 30-299
Cow position:
Alignm length: 270
Alignm identity: 188
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 30-340
Cow position:
Alignm length: 314
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 75, 68

Conread position: 30-350
Cow position:
Alignm length: 323
Alignm identity: 214
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 164, 159

Conread position: 30-384
Cow position:
Alignm length: 360
Alignm identity: 234
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 65, 49

Conread position: 31-340
Cow position:
Alignm length: 311
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 224, 230

Conread position: 31-384
Cow position:
Alignm length: 354
Alignm identity: 230
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 32-374
Cow position:
Alignm length: 346
Alignm identity: 234
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 59, 55

Conread position: 32-383
Cow position:
Alignm length: 354
Alignm identity: 225
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 246, 233

Conread position: 32-384
Cow position:
Alignm length: 359
Alignm identity: 222
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 159, 138

Conread position: 34-384
Cow position:
Alignm length: 352
Alignm identity: 221
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 303, 316

Conread position: 34-384
Cow position:
Alignm length: 352
Alignm identity: 215
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 155, 160

Conread position: 42-383
Cow position:
Alignm length: 342
Alignm identity: 223
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 44-335
Cow position:
Alignm length: 296
Alignm identity: 194
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 54, 49

Conread position: 44-335
Cow position:
Alignm length: 294
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 51, 35

Conread position: 44-384
Cow position:
Alignm length: 342
Alignm identity: 224
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 51, 35

Conread position: 46-384
Cow position:
Alignm length: 340
Alignm identity: 211
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 64, 7

Conread position: 47-377
Cow position:
Alignm length: 332
Alignm identity: 212
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 64, 54

Conread position: 47-384
Cow position:
Alignm length: 340
Alignm identity: 223
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 61, 32

Conread position: 47-384
Cow position:
Alignm length: 341
Alignm identity: 223
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 63, 32

Conread position: 49-383
Cow position:
Alignm length: 336
Alignm identity: 224
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 229, 218

Conread position: 53-335
Cow position:
Alignm length: 285
Alignm identity: 180
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 134, 141

Conread position: 53-384
Cow position:
Alignm length: 335
Alignm identity: 214
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 55, 26

Conread position: 60-384
Cow position:
Alignm length: 330
Alignm identity: 215
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 122, 115

Conread position: 61-384
Cow position:
Alignm length: 325
Alignm identity: 204
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 33, 18

Conread position: 67-252
Cow position:
Alignm length: 187
Alignm identity: 128
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 24, 20

Conread position: 109-335
Cow position:
Alignm length: 229
Alignm identity: 157
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 64

Conread position: 109-338
Cow position:
Alignm length: 232
Alignm identity: 154
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 67, 76

Conread position: 109-383
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 24, 18

Conread position: 109-384
Cow position:
Alignm length: 277
Alignm identity: 175
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 237, 219

Conread position: 109-384
Cow position:
Alignm length: 277
Alignm identity: 177
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 237, 219

Conread position: 109-384
Cow position:
Alignm length: 279
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 68, 64

Conread position: 110-384
Cow position:
Alignm length: 276
Alignm identity: 185
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 167, 155

Conread position: 123-384
Cow position:
Alignm length: 262
Alignm identity: 168
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 126-384
Cow position:
Alignm length: 259
Alignm identity: 166
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 138-335
Cow position:
Alignm length: 199
Alignm identity: 133
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 80, 72

Conread position: 143-384
Cow position:
Alignm length: 243
Alignm identity: 159
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 35, 42

Show alignments to all cow chromosomes.