Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-384 |
| Cow position: | chr23:24560766-24560383 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 251 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 109, 86 |
| Conread position: | 3-384 |
| Cow position: | chr23:24639510-24639891 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 246 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 45, 40 |
| Conread position: | 5-338 |
| Cow position: | chr23:25698444-25698111 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 47 |
| Conread position: | 7-302 |
| Cow position: | chr23:24560424-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 88, 80 |
| Conread position: | 7-383 |
| Cow position: | chr23:24560508-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 332 |
| Conread position: | 7-384 |
| Cow position: | chr23:24547284-24546907 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 7-384 |
| Cow position: | chr23:24639346-24639723 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 244 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 34, 43 |
| Conread position: | 8-383 |
| Cow position: | chr23:24547199-24546824 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 71 |
| Conread position: | 9-237 |
| Cow position: | chr23:24626526-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 78, 18 |
| Conread position: | 11-223 |
| Cow position: | chr23:24639854-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 78, 68 |
| Conread position: | 11-335 |
| Cow position: | chr23:24535911-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 99, 76 |
| Conread position: | 15-219 |
| Cow position: | chr23:24560332-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 15-384 |
| Cow position: | chr23:24639606-24639975 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 16-338 |
| Cow position: | chr23:25626001-25626323 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 77, 60 |
| Conread position: | 16-339 |
| Cow position: | chr23:25698685-25698362 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 31, 41 |
| Conread position: | 23-335 |
| Cow position: | chr23:24639194-24639506 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 69, 56 |
| Conread position: | 27-242 |
| Cow position: | chr23:25626765-25626980 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 81, 60 |
| Conread position: | 27-278 |
| Cow position: | chr23:25723977-25723726 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 27-298 |
| Cow position: | chr23:25660469-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 27-314 |
| Cow position: | chr23:24546928-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 69 |
| Conread position: | 27-335 |
| Cow position: | chr23:24547012-24546704 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 27-338 |
| Cow position: | chr23:24639450-24639761 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-339 |
| Cow position: | chr23:24522502-24522190 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-374 |
| Cow position: | chr23:24535811-24535464 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 27-374 |
| Cow position: | chr23:24626374-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-376 |
| Cow position: | chr23:25626597-25626946 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-380 |
| Cow position: | chr23:25626096-25626449 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 27-384 |
| Cow position: | chr23:24547096-24546739 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 27-384 |
| Cow position: | chr23:24639702-24640059 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr23:25626264-25626618 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 313, 0 |
| Conread position: | 27-384 |
| Cow position: | chr23:25626516-25626870 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 27-384 |
| Cow position: | chr23:25660301-25660658 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 63, 52 |
| Conread position: | 28-279 |
| Cow position: | chr23:24522417-24522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 65, 51 |
| Conread position: | 28-303 |
| Cow position: | chr23:24639787-24640062 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 63, 54 |
| Conread position: | 28-383 |
| Cow position: | chr23:24560655-24560300 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 28-384 |
| Cow position: | chr23:24560571-24560215 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 28-384 |
| Cow position: | chr23:25660218-25660574 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 232, 226 |
| Conread position: | 30-338 |
| Cow position: | chr23:25724058-25723750 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 209 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 30-383 |
| Cow position: | chr23:24535976-24535623 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 94, 110 |
| Conread position: | 30-383 |
| Cow position: | chr23:24654102-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 30-384 |
| Cow position: | chr23:24560821-24560467 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-335 |
| Cow position: | chr23:25698502-25698198 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 154, 145 |
| Conread position: | 31-384 |
| Cow position: | chr23:24639286-24639639 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 33-335 |
| Cow position: | chr23:25626186-25626488 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 37-384 |
| Cow position: | chr23:24522739-24522397 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 56, 12 |
| Conread position: | 42-383 |
| Cow position: | chr23:24522571-24522230 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 42-384 |
| Cow position: | chr23:24547334-24546991 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 45-377 |
| Cow position: | chr23:24654032-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 8, 38 |
| Conread position: | 45-383 |
| Cow position: | chr23:24522649-24522314 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 77, 43 |
| Conread position: | 47-384 |
| Cow position: | chr23:24626310-24626647 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 55-250 |
| Cow position: | chr23:24521968-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 139 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 55-379 |
| Cow position: | chr23:25660413-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 224 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 60-384 |
| Cow position: | chr23:24560875-24560551 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 61-384 |
| Cow position: | chr23:24536029-24535706 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 126, 133 |
| Conread position: | 61-384 |
| Cow position: | chr23:25660167-25660490 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-384 |
| Cow position: | chr23:25724107-25723788 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-384 |
| Cow position: | chr23:25626000-25626285 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-384 |
| Cow position: | chr23:24560910-24560635 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 63 |
| Conread position: | 110-383 |
| Cow position: | chr23:24639197-24639470 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 15, 10 |
| Conread position: | 113-384 |
| Cow position: | chr23:25724143-25723872 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 59, 49 |
| Conread position: | 122-383 |
| Cow position: | chr23:24654024-24654287 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 135 |
| Conread position: | 123-383 |
| Cow position: | chr23:25660145-25660405 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-384 |
| Cow position: | chr23:24536051-24535790 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-384 |
| Cow position: | chr23:24626302-24626563 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-334 |
| Cow position: | chr23:24521982-24521773 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.