Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-383 |
| Cow position: | chr24:17035751-17035369 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 250 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 1-383 |
| Cow position: | chr24:17078222-17077840 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr24:17036423-17036040 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 7-244 |
| Cow position: | chr24:17070756-17070994 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 7-384 |
| Cow position: | chr24:17078048-17077671 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 8-324 |
| Cow position: | chr24:17013210-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 99, 89 |
| Conread position: | 15-383 |
| Cow position: | chr24:17070596-17070964 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-211 |
| Cow position: | chr24:17077692-17077508 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-253 |
| Cow position: | chr24:17077776-17077550 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 27-335 |
| Cow position: | chr24:17077944-17077636 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-338 |
| Cow position: | chr24:17035389-17035078 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 27-377 |
| Cow position: | chr24:17035473-17035123 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-382 |
| Cow position: | chr24:17070692-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 27-383 |
| Cow position: | chr24:17035641-17035285 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 64, 48 |
| Conread position: | 27-383 |
| Cow position: | chr24:17035809-17035453 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 27-384 |
| Cow position: | chr24:17035557-17035200 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 66, 60 |
| Conread position: | 27-384 |
| Cow position: | chr24:17035893-17035536 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 69, 60 |
| Conread position: | 27-384 |
| Cow position: | chr24:17036061-17035704 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 27-384 |
| Cow position: | chr24:17036145-17035788 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 27-384 |
| Cow position: | chr24:17036229-17035872 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 53 |
| Conread position: | 27-384 |
| Cow position: | chr24:17036313-17035956 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 143, 135 |
| Conread position: | 27-384 |
| Cow position: | chr24:17036481-17036124 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 65, 55 |
| Conread position: | 27-384 |
| Cow position: | chr24:17070524-17070881 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 59 |
| Conread position: | 27-384 |
| Cow position: | chr24:17078112-17077755 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 28-383 |
| Cow position: | chr24:17035304-17034949 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 63, 51 |
| Conread position: | 28-384 |
| Cow position: | chr24:17077859-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 232 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 28-384 |
| Cow position: | chr24:17078279-17077923 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 203 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-383 |
| Cow position: | chr24:17013147-17013501 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 50 |
| Conread position: | 30-383 |
| Cow position: | chr24:17070443-17070796 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-384 |
| Cow position: | chr24:17035973-17035620 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 142 |
| Conread position: | 47-384 |
| Cow position: | chr24:17036545-17036208 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 63, 57 |
| Conread position: | 61-272 |
| Cow position: | chr24:16986445-16986656 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 61-383 |
| Cow position: | chr24:17036612-17036293 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 109-384 |
| Cow position: | chr24:17070438-17070713 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 142-339 |
| Cow position: | chr24:16986442-16986639 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.