Cow genome map

Conread name: Ss1.1-ruio22_o15.5

Conread position: 1-335
Cow position: chr25:34447397-34447729 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 226
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 91, 78

Conread position: 1-383
Cow position: chr25:34769665-34769283 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-384
Cow position: chr25:33157182-33156799 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-384
Cow position: chr25:33157266-33156883 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 1-384
Cow position: chr25:34769581-34769198 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 102

Conread position: 6-384
Cow position: chr25:34769744-34769366 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-147
Cow position: chr25:34433065-34433205 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 67

Conread position: 7-384
Cow position: chr25:34769995-34769618 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 72

Conread position: 9-290
Cow position: chr25:23420598-23420879 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 187
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 9-355
Cow position: chr25:33305270-33304929 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 224
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 83, 11

Conread position: 9-384
Cow position: chr25:33127851-33128224 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 18

Conread position: 11-338
Cow position: chr25:23420516-23420843 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-363
Cow position: chr25:34714167-34714519 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 210
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 11-382
Cow position: chr25:33298948-33299319 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 239
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 74, 99

Conread position: 11-384
Cow position: chr25:23420348-23420721 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 329

Conread position: 11-384
Cow position: chr25:36801592-36801963 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 234
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 93, 99

Conread position: 14-384
Cow position: chr25:33298699-33299069 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 244
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 71, 92

Conread position: 14-384
Cow position: chr25:33299371-33299741 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 245
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 90, 96

Conread position: 16-348
Cow position: chr25:18642201-18641866 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 215
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 79, 59

Conread position: 25-246
Cow position: chr25:34432999-34433220 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 27-241
Cow position: chr25:34433505-34433716 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 151
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 100, 0

Conread position: 27-305
Cow position: chr25:36801692-36801970 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 177
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 215, 233

Conread position: 27-338
Cow position: chr25:23420448-23420759 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 52

Conread position: 27-374
Cow position: chr25:34713931-34714278 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 221
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 25

Conread position: 27-381
Cow position: chr25:34433838-34434177 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 221
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 61, 0

Conread position: 27-382
Cow position: chr25:34433670-34434022 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 232
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 64, 55

Conread position: 27-382
Cow position: chr25:34447255-34447610 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 229
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 27-383
Cow position: chr25:34770059-34769703 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 229

Conread position: 27-384
Cow position: chr25:23420211-23420553 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 236
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 85, 61

Conread position: 27-384
Cow position: chr25:33157324-33156967 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 84, 76

Conread position: 27-384
Cow position: chr25:33157408-33157051 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 232
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position: chr25:33157492-33157135 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position: chr25:33299300-33299657 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 320, 310

Conread position: 27-384
Cow position: chr25:33299468-33299823 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 348, 0

Conread position: 27-384
Cow position: chr25:33305899-33305548 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 226
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 58, 72

Conread position: 27-384
Cow position: chr25:34447087-34447444 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 231
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 80, 71

Conread position: 27-384
Cow position: chr25:34447339-34447696 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 240
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 65, 52

Conread position: 27-384
Cow position: chr25:34769891-34769534 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 27-384
Cow position: chr25:34770143-34769786 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 69

Conread position: 27-384
Cow position: chr25:36800696-36801053 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 215
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 150, 164

Conread position: 27-384
Cow position: chr25:36800780-36801137 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 237
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 21, 16

Conread position: 27-384
Cow position: chr25:36801356-36801713 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 215
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 28-220
Cow position: chr25:327073-327265 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 63, 53

Conread position: 28-291
Cow position: chr25:366791-367054 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 176
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 120, 126

Conread position: 28-302
Cow position: chr25:326989-327263 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 82, 72

Conread position: 28-303
Cow position: chr25:34769470-34769195 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 243, 238

Conread position: 28-316
Cow position: chr25:346514-346802 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 120, 126

Conread position: 28-319
Cow position: chr25:33157071-33156781 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 281, 0

Conread position: 28-329
Cow position: chr25:36801033-36801334 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 203
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 81, 72

Conread position: 28-330
Cow position: chr25:22235895-22236197 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 60, 74

Conread position: 28-332
Cow position: chr25:326563-326867 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 195
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 62, 73

Conread position: 28-335
Cow position: chr25:33299049-33299356 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 199
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 67, 60

Conread position: 28-335
Cow position: chr25:33305418-33305115 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 64, 12

Conread position: 28-335
Cow position: chr25:36800949-36801256 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 57, 68

Conread position: 28-384
Cow position: chr25:33298797-33299153 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 220
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 226, 240

Conread position: 28-384
Cow position: chr25:33298881-33299237 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 224
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 28-384
Cow position: chr25:34769806-34769450 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-338
Cow position: chr25:34447005-34447314 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 203
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 29-374
Cow position: chr25:34732121-34731776 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 214
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 11, 17

Conread position: 29-384
Cow position: chr25:34714101-34714456 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 221
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 63, 58

Conread position: 30-329
Cow position: chr25:36800867-36801166 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 199
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 55, 74

Conread position: 31-384
Cow position: chr25:33299136-33299489 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 239
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 78, 69

Conread position: 31-384
Cow position: chr25:36801528-36801881 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 32-252
Cow position: chr25:33145168-33145388 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 161
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 55

Conread position: 33-335
Cow position: chr25:33298550-33298852 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 69

Conread position: 33-383
Cow position: chr25:33127789-33128139 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 54

Conread position: 36-377
Cow position: chr25:34714024-34714365 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 217
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 60, 46

Conread position: 39-317
Cow position: chr25:34762820-34763100 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 174
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 13, 0

Conread position: 41-335
Cow position: chr25:34732613-34732319 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 182
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 42-335
Cow position: chr25:33306052-33305761 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 187
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 5, 75

Conread position: 42-384
Cow position: chr25:346443-346786 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 50

Conread position: 43-384
Cow position: chr25:33144848-33145184 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 215
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 135, 11

Conread position: 44-383
Cow position: chr25:33127716-33128055 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 226
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 44-383
Cow position: chr25:34447188-34447527 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 218
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 315, 305

Conread position: 47-358
Cow position: chr25:366726-367037 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 40, 44

Conread position: 47-384
Cow position: chr25:34446939-34447276 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 215
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 231, 220

Conread position: 48-335
Cow position: chr25:36800633-36800920 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 192
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 62, 53

Conread position: 53-326
Cow position: chr25:34763169-34763442 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 173
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 37, 55

Conread position: 60-330
Cow position: chr25:414760-414496 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 178
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 33, 8

Conread position: 61-335
Cow position: chr25:33145113-33145387 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 27, 40

Conread position: 61-384
Cow position: chr25:33306283-33305960 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 212
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 18

Conread position: 66-383
Cow position: chr25:23420319-23420636 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 188

Conread position: 70-383
Cow position: chr25:33145038-33145351 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 207
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 22, 17

Conread position: 92-325
Cow position: chr25:34433487-34433716 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 92-384
Cow position: chr25:18642209-18641914 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 184
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 135, 0

Conread position: 105-384
Cow position: chr25:326470-326751 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 180
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 7, 40

Conread position: 108-384
Cow position: chr25:366703-366979 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 208, 214

Conread position: 109-375
Cow position: chr25:326560-326826 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 178
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 53, 68

Conread position: 109-383
Cow position: chr25:34770145-34769871 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 192
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 109-384
Cow position: chr25:326986-327261 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 182
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 69, 77

Conread position: 109-384
Cow position: chr25:33157494-33157219 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 180
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 53, 63

Conread position: 119-384
Cow position: chr25:33127707-33127972 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 177
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 123-338
Cow position: chr25:34732615-34732400 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 142
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 39, 47

Conread position: 129-384
Cow position: chr25:34446937-34447192 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 162
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 129-384
Cow position: chr25:34732105-34731850 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 163
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 149, 128

Conread position: 130-384
Cow position: chr25:22235829-22236083 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 163
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 111, 137

Conread position: 149-384
Cow position: chr25:33145033-33145268 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 154
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 108, 118

Show alignments to all cow chromosomes.