Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-323 |
| Cow position: | chr28:9290374-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 86 |
| Conread position: | 6-302 |
| Cow position: | chr28:9253315-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 79, 102 |
| Conread position: | 9-384 |
| Cow position: | chr28:34695877-34696250 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 114, 40 |
| Conread position: | 11-324 |
| Cow position: | chr28:7758541-7758854 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 291, 239 |
| Conread position: | 11-335 |
| Cow position: | chr28:9299354-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 74, 82 |
| Conread position: | 11-384 |
| Cow position: | chr28:9298699-9299069 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 321, 119 |
| Conread position: | 14-384 |
| Cow position: | chr28:11334001-11333631 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 15-383 |
| Cow position: | chr28:34679589-34679220 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 86, 38 |
| Conread position: | 15-384 |
| Cow position: | chr28:7757469-7757838 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 235 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-384 |
| Cow position: | chr28:7810560-7810929 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-317 |
| Cow position: | chr28:7810653-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 25-384 |
| Cow position: | chr28:11334158-11333799 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 134, 141 |
| Conread position: | 27-324 |
| Cow position: | chr28:11333820-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-336 |
| Cow position: | chr28:9290069-9290374 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 27-338 |
| Cow position: | chr28:34679495-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 157, 108 |
| Conread position: | 27-374 |
| Cow position: | chr28:7757985-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 66, 82 |
| Conread position: | 27-377 |
| Cow position: | chr28:9253252-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-378 |
| Cow position: | chr28:7758473-7758823 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 64, 52 |
| Conread position: | 27-381 |
| Cow position: | chr28:7757397-7757751 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-383 |
| Cow position: | chr28:7758389-7758745 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 239 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 27-383 |
| Cow position: | chr28:7810329-7810676 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 27-383 |
| Cow position: | chr28:9252834-9253188 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 110, 63 |
| Conread position: | 27-384 |
| Cow position: | chr28:7757733-7758090 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-384 |
| Cow position: | chr28:9253084-9253441 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 27-384 |
| Cow position: | chr28:9253168-9253525 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 238 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 58, 74 |
| Conread position: | 27-384 |
| Cow position: | chr28:9289982-9290338 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 72, 68 |
| Conread position: | 27-384 |
| Cow position: | chr28:34695725-34696082 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 28-338 |
| Cow position: | chr28:33210294-33210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 28-380 |
| Cow position: | chr28:7757650-7758002 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-384 |
| Cow position: | chr28:11333903-11333547 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 29-246 |
| Cow position: | chr28:9298968-9299183 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 29-380 |
| Cow position: | chr28:34673422-34673773 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 81, 75 |
| Conread position: | 31-384 |
| Cow position: | chr28:9253004-9253357 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-329 |
| Cow position: | chr28:7757585-7757867 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 47-330 |
| Cow position: | chr28:7758325-7758608 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 47-384 |
| Cow position: | chr28:9299222-9299559 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 55-380 |
| Cow position: | chr28:33210237-33210562 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 37, 32 |
| Conread position: | 60-384 |
| Cow position: | chr28:34695842-34696166 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 122, 141 |
| Conread position: | 64-384 |
| Cow position: | chr28:9252953-9253273 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-315 |
| Cow position: | chr28:7810283-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-375 |
| Cow position: | chr28:7810526-7810836 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 115, 106 |
| Conread position: | 66-384 |
| Cow position: | chr28:7757352-7757670 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 27, 39 |
| Conread position: | 93-338 |
| Cow position: | chr28:34679595-34679354 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 94-384 |
| Cow position: | chr28:9299188-9299475 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 129-384 |
| Cow position: | chr28:7758323-7758578 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 130-384 |
| Cow position: | chr28:33210228-33210482 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 150-355 |
| Cow position: | chr28:7810284-7810489 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.