Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-215 |
| Cow position: | chr3:62721782-62721568 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 91, 86 |
| Conread position: | 1-294 |
| Cow position: | chr3:62721866-62721573 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 1-384 |
| Cow position: | chr3:62742401-62742779 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 61, 39 |
| Conread position: | 6-286 |
| Cow position: | chr3:68027472-68027752 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 198 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 86, 73 |
| Conread position: | 7-383 |
| Cow position: | chr3:62722112-62721736 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-383 |
| Cow position: | chr3:62742907-62743261 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 7-383 |
| Cow position: | chr3:68027137-68027513 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 346, 333 |
| Conread position: | 7-384 |
| Cow position: | chr3:62722028-62721651 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-384 |
| Cow position: | chr3:62722196-62721819 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 72 |
| Conread position: | 7-384 |
| Cow position: | chr3:62742491-62742863 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 8-382 |
| Cow position: | chr3:68045815-68046189 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 93, 71 |
| Conread position: | 11-384 |
| Cow position: | chr3:68045734-68046107 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 175 |
| Conread position: | 15-383 |
| Cow position: | chr3:68045654-68046022 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 68 |
| Conread position: | 27-302 |
| Cow position: | chr3:62742758-62743029 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 63, 69 |
| Conread position: | 27-338 |
| Cow position: | chr3:77351009-77350704 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 40 |
| Conread position: | 27-383 |
| Cow position: | chr3:68027325-68027681 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr3:62721924-62721567 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 27-384 |
| Cow position: | chr3:62742676-62743027 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 210, 70 |
| Conread position: | 28-307 |
| Cow position: | chr3:68046087-68046364 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 254, 0 |
| Conread position: | 28-330 |
| Cow position: | chr3:62743158-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 62, 66 |
| Conread position: | 28-383 |
| Cow position: | chr3:77351258-77350911 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 78 |
| Conread position: | 29-249 |
| Cow position: | chr3:77350845-77350628 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 29-357 |
| Cow position: | chr3:68027411-68027739 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 63, 53 |
| Conread position: | 29-384 |
| Cow position: | chr3:62742346-62742697 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 62, 8 |
| Conread position: | 29-384 |
| Cow position: | chr3:77351090-77350742 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 115, 50 |
| Conread position: | 30-379 |
| Cow position: | chr3:68027076-68027425 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 323, 307 |
| Conread position: | 30-383 |
| Cow position: | chr3:68045921-68046274 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-384 |
| Cow position: | chr3:62722257-62721903 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-353 |
| Cow position: | chr3:68046006-68046328 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 218 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 60, 55 |
| Conread position: | 31-382 |
| Cow position: | chr3:68027245-68027596 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 33-383 |
| Cow position: | chr3:62722339-62721988 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 40-384 |
| Cow position: | chr3:68026917-68027262 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 84 |
| Conread position: | 47-338 |
| Cow position: | chr3:62742615-62742902 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 66-335 |
| Cow position: | chr3:62743033-62743297 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 104-334 |
| Cow position: | chr3:16020481-16020259 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 107-384 |
| Cow position: | chr3:68045578-68045855 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 68 |
Show alignments to all cow chromosomes.