Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 1-337 |
| Cow position: | chr7:1015146-1015484 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 1-384 |
| Cow position: | chr7:3179904-3180287 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr7:3180240-3180623 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-384 |
| Cow position: | chr7:8325024-8325407 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 186, 205 |
| Conread position: | 1-384 |
| Cow position: | chr7:8325528-8325911 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 182, 201 |
| Conread position: | 6-384 |
| Cow position: | chr7:3179741-3180119 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 6-384 |
| Cow position: | chr7:18390290-18390668 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-383 |
| Cow position: | chr7:1014732-1015108 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 69 |
| Conread position: | 8-384 |
| Cow position: | chr7:3180079-3180455 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-292 |
| Cow position: | chr7:42878555-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 10-383 |
| Cow position: | chr7:8243267-8243639 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 173, 113 |
| Conread position: | 11-219 |
| Cow position: | chr7:3180670-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 80, 68 |
| Conread position: | 11-294 |
| Cow position: | chr7:1014322-1014605 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-335 |
| Cow position: | chr7:1438382-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 11-335 |
| Cow position: | chr7:1439602-1439928 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 74, 42 |
| Conread position: | 11-338 |
| Cow position: | chr7:18390379-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-383 |
| Cow position: | chr7:3179998-3180370 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-383 |
| Cow position: | chr7:8277393-8277765 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 176, 183 |
| Conread position: | 11-384 |
| Cow position: | chr7:42879059-42878686 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 12-384 |
| Cow position: | chr7:42879310-42878938 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 13-260 |
| Cow position: | chr7:8243857-8244101 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 160, 138 |
| Conread position: | 13-376 |
| Cow position: | chr7:11600800-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 181, 159 |
| Conread position: | 13-384 |
| Cow position: | chr7:8243689-8244058 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 181, 174 |
| Conread position: | 15-384 |
| Cow position: | chr7:1014656-1015025 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-384 |
| Cow position: | chr7:42879475-42879106 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 80, 91 |
| Conread position: | 16-383 |
| Cow position: | chr7:1014909-1015276 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 87 |
| Conread position: | 20-384 |
| Cow position: | chr7:11600959-11600597 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 24-383 |
| Cow position: | chr7:11601292-11600934 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 241 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 61, 83 |
| Conread position: | 27-335 |
| Cow position: | chr7:1439956-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 147, 21 |
| Conread position: | 27-374 |
| Cow position: | chr7:1439451-1439800 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 229, 135 |
| Conread position: | 27-376 |
| Cow position: | chr7:42878623-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 237 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 65, 60 |
| Conread position: | 27-380 |
| Cow position: | chr7:18390227-18390580 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 23 |
| Conread position: | 27-383 |
| Cow position: | chr7:1015004-1015360 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 236 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-383 |
| Cow position: | chr7:3180350-3180706 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 176 |
| Conread position: | 27-383 |
| Cow position: | chr7:42878875-42878519 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 27-384 |
| Cow position: | chr7:1015088-1015445 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chr7:1438314-1438671 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 220 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 27-384 |
| Cow position: | chr7:1439872-1440228 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 244 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 27-384 |
| Cow position: | chr7:8277913-8278270 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 86, 52 |
| Conread position: | 27-384 |
| Cow position: | chr7:42878959-42878602 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 27-384 |
| Cow position: | chr7:42879127-42878770 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 78 |
| Conread position: | 27-384 |
| Cow position: | chr7:42879211-42878854 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 82 |
| Conread position: | 28-302 |
| Cow position: | chr7:3180603-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 225, 193 |
| Conread position: | 28-383 |
| Cow position: | chr7:42878706-42878351 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 234 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 82, 75 |
| Conread position: | 28-384 |
| Cow position: | chr7:3180183-3180539 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 24 |
| Conread position: | 29-335 |
| Cow position: | chr7:18390481-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-383 |
| Cow position: | chr7:11600868-11600514 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-383 |
| Cow position: | chr7:11601036-11600682 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 29-384 |
| Cow position: | chr7:8277327-8277682 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 142, 167 |
| Conread position: | 29-384 |
| Cow position: | chr7:11601204-11600849 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 30-384 |
| Cow position: | chr7:3179849-3180203 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-384 |
| Cow position: | chr7:8325473-8325827 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 157, 164 |
| Conread position: | 31-335 |
| Cow position: | chr7:8325390-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 163, 153 |
| Conread position: | 31-335 |
| Cow position: | chr7:18390147-18390451 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 31-340 |
| Cow position: | chr7:8243455-8243764 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 139, 163 |
| Conread position: | 31-383 |
| Cow position: | chr7:3180438-3180790 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 48 |
| Conread position: | 31-383 |
| Cow position: | chr7:8243204-8243555 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 152, 159 |
| Conread position: | 31-383 |
| Cow position: | chr7:8324970-8325322 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 306, 319 |
| Conread position: | 31-384 |
| Cow position: | chr7:1014840-1015193 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 149 |
| Conread position: | 31-384 |
| Cow position: | chr7:8242868-8243221 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 310, 322 |
| Conread position: | 31-384 |
| Cow position: | chr7:8277749-8278102 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 140, 162 |
| Conread position: | 31-384 |
| Cow position: | chr7:8324802-8325155 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 153, 162 |
| Conread position: | 31-384 |
| Cow position: | chr7:11601118-11600765 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 31-384 |
| Cow position: | chr7:42878787-42878434 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 34-384 |
| Cow position: | chr7:3180525-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 263 |
| Conread position: | 36-384 |
| Cow position: | chr7:1014097-1014443 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 42-383 |
| Cow position: | chr7:1014271-1014610 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 44-379 |
| Cow position: | chr7:8278098-8278433 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 215 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 131, 150 |
| Conread position: | 44-383 |
| Cow position: | chr7:8324731-8325070 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 49 |
| Conread position: | 46-252 |
| Cow position: | chr7:18390582-18390788 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 46-384 |
| Cow position: | chr7:8277596-8277934 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 53, 49 |
| Conread position: | 50-384 |
| Cow position: | chr7:8243390-8243724 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 37, 48 |
| Conread position: | 52-338 |
| Cow position: | chr7:8277518-8277804 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 131, 127 |
| Conread position: | 53-349 |
| Cow position: | chr7:8242806-8243102 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-384 |
| Cow position: | chr7:11434809-11434485 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 129, 142 |
| Conread position: | 55-382 |
| Cow position: | chr7:8277857-8278184 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 211 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 132, 139 |
| Conread position: | 55-384 |
| Cow position: | chr7:8243144-8243472 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 55-384 |
| Cow position: | chr7:8325246-8325575 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 55-384 |
| Cow position: | chr7:8325750-8326079 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 139, 119 |
| Conread position: | 61-383 |
| Cow position: | chr7:3179712-3180034 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-377 |
| Cow position: | chr7:11434554-11434240 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 131 |
| Conread position: | 83-379 |
| Cow position: | chr7:1014225-1014522 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 93-384 |
| Cow position: | chr7:3179660-3179951 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 127-384 |
| Cow position: | chr7:8324730-8324987 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 48 |
| Conread position: | 144-384 |
| Cow position: | chr7:8242813-8243053 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 43, 50 |
Show alignments to all cow chromosomes.