Cow genome map
| Conread name: | Ss1.1-ruio22_o15.5 |
| Conread position: | 7-381 |
| Cow position: | chrX:29045781-29045408 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 103, 5 |
| Conread position: | 9-384 |
| Cow position: | chrX:29045127-29044754 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 233, 10 |
| Conread position: | 11-383 |
| Cow position: | chrX:29045043-29044671 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 68 |
| Conread position: | 12-383 |
| Cow position: | chrX:25310108-25310479 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 240 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-384 |
| Cow position: | chrX:25309775-25310144 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 16-383 |
| Cow position: | chrX:29045206-29044839 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 27-232 |
| Cow position: | chrX:29044859-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 52 |
| Conread position: | 27-302 |
| Cow position: | chrX:29044943-29044668 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 191 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-383 |
| Cow position: | chrX:25309955-25310311 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 236 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-383 |
| Cow position: | chrX:25324598-25324242 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-383 |
| Cow position: | chrX:25324766-25324410 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 27-383 |
| Cow position: | chrX:25325102-25324746 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 153 |
| Conread position: | 27-383 |
| Cow position: | chrX:25325522-25325166 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-383 |
| Cow position: | chrX:25325606-25325250 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 27-383 |
| Cow position: | chrX:25325774-25325418 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 320, 312 |
| Conread position: | 27-384 |
| Cow position: | chrX:25309871-25310228 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 83, 71 |
| Conread position: | 27-384 |
| Cow position: | chrX:25310039-25310396 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 70 |
| Conread position: | 27-384 |
| Cow position: | chrX:25310207-25310564 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 60, 72 |
| Conread position: | 27-384 |
| Cow position: | chrX:25324850-25324493 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-384 |
| Cow position: | chrX:25325018-25324661 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 64, 55 |
| Conread position: | 27-384 |
| Cow position: | chrX:25325186-25324829 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 162, 167 |
| Conread position: | 27-384 |
| Cow position: | chrX:25325270-25324913 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 74 |
| Conread position: | 27-384 |
| Cow position: | chrX:25325354-25324997 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 167 |
| Conread position: | 27-384 |
| Cow position: | chrX:25325690-25325333 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 27-384 |
| Cow position: | chrX:29045279-29044922 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 21, 16 |
| Conread position: | 28-302 |
| Cow position: | chrX:25324513-25324239 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 83, 70 |
| Conread position: | 28-323 |
| Cow position: | chrX:25310292-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 64, 51 |
| Conread position: | 28-384 |
| Cow position: | chrX:25324681-25324325 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-384 |
| Cow position: | chrX:25324933-25324577 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 82, 70 |
| Conread position: | 30-383 |
| Cow position: | chrX:25325435-25325082 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 46 |
| Conread position: | 31-251 |
| Cow position: | chrX:12627842-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 87, 81 |
| Conread position: | 36-384 |
| Cow position: | chrX:29045837-29045489 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 43-384 |
| Cow position: | chrX:25309721-25310060 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 225 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 44-380 |
| Cow position: | chrX:25325841-25325505 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 35, 56 |
| Conread position: | 48-335 |
| Cow position: | chrX:12627441-12627726 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 48-335 |
| Cow position: | chrX:13826862-13826575 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 30, 50 |
| Conread position: | 61-384 |
| Cow position: | chrX:13826933-13826610 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 121 |
| Conread position: | 115-384 |
| Cow position: | chrX:25309707-25309976 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.