Cow genome map


           Conread name:
           Ss1.1-ruio34_e2.5
        

               Conread position:
               1-121
               

               Cow position:
               chr10:50018276-50018159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               121
               

               Alignm identity:
               100
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               1-221
               

               Cow position:
               chr10:61297111-61297316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               115, 0
               

               Conread position:
               1-250
               

               Cow position:
               chr10:10581454-10581691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               181
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-263
               

               Cow position:
               chr10:31523620-31523856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               188
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               1-280
               

               Cow position:
               chr10:37060711-37060972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               1-284
               

               Cow position:
               chr10:42628449-42628713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               194
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               63, 0
               

               Conread position:
               1-313
               

               Cow position:
               chr10:4192431-4192136 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               1-323
               

               Cow position:
               chr10:57990183-57989875 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 78
               

               Conread position:
               1-355
               

               Cow position:
               chr10:29846829-29846486 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               266
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-377
               

               Cow position:
               chr10:14803615-14803981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 127
               

               Conread position:
               1-377
               

               Cow position:
               chr10:19143558-19143191 (view UCSC Genome Browser custom track)
               

               Alignm length:
               379
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               317, 127
               

               Conread position:
               1-380
               

               Cow position:
               chr10:19511388-19511755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 38
               

               Conread position:
               1-380
               

               Cow position:
               chr10:22101022-22101381 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-381
               

               Cow position:
               chr10:124091-124460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 7
               

               Conread position:
               1-381
               

               Cow position:
               chr10:276374-276740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 70
               

               Conread position:
               1-381
               

               Cow position:
               chr10:1375317-1375681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 124
               

               Conread position:
               1-381
               

               Cow position:
               chr10:7282902-7282537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-381
               

               Cow position:
               chr10:21486697-21487064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               272
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 122
               

               Conread position:
               1-381
               

               Cow position:
               chr10:24299071-24298704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 117
               

               Conread position:
               1-381
               

               Cow position:
               chr10:25359180-25359549 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-381
               

               Cow position:
               chr10:25498136-25498502 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 78
               

               Conread position:
               1-381
               

               Cow position:
               chr10:29633078-29632713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 75
               

               Conread position:
               1-381
               

               Cow position:
               chr10:32650513-32650883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 122
               

               Conread position:
               1-381
               

               Cow position:
               chr10:34685676-34686043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 124
               

               Conread position:
               1-381
               

               Cow position:
               chr10:37769603-37769971 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-381
               

               Cow position:
               chr10:38345582-38345212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               355, 116
               

               Conread position:
               1-381
               

               Cow position:
               chr10:41876699-41877069 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 78
               

               Conread position:
               1-381
               

               Cow position:
               chr10:62216387-62216756 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 124
               

               Conread position:
               1-381
               

               Cow position:
               chr10:62409071-62408707 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 0
               

               Conread position:
               1-381
               

               Cow position:
               chr10:62778124-62778497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               295
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 126
               

               Conread position:
               1-383
               

               Cow position:
               chr10:21740968-21740600 (view UCSC Genome Browser custom track)
               

               Alignm length:
               383
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               1-409
               

               Cow position:
               chr10:280839-280441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-409
               

               Cow position:
               chr10:25565465-25565078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-409
               

               Cow position:
               chr10:29696022-29696415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 127
               

               Conread position:
               1-409
               

               Cow position:
               chr10:39179564-39179963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               384, 127
               

               Conread position:
               1-409
               

               Cow position:
               chr10:39817569-39817183 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               295, 127
               

               Conread position:
               1-409
               

               Cow position:
               chr10:47906561-47906958 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 78
               

               Conread position:
               1-439
               

               Cow position:
               chr10:19839934-19840362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               441
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               356, 21
               

               Conread position:
               1-599
               

               Cow position:
               chr10:60489446-60490022 (view UCSC Genome Browser custom track)
               

               Alignm length:
               603
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 79
               

               Conread position:
               2-408
               

               Cow position:
               chr10:10478361-10477962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               325, 67
               

               Conread position:
               2-437
               

               Cow position:
               chr10:38847155-38847568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               442
               

               Alignm identity:
               297
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               207, 77
               

               Conread position:
               3-377
               

               Cow position:
               chr10:32578086-32578435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               354, 122
               

               Conread position:
               3-408
               

               Cow position:
               chr10:38546440-38546046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               297
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               344, 126
               

               Conread position:
               5-409
               

               Cow position:
               chr10:11685879-11685491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 74
               

               Conread position:
               5-409
               

               Cow position:
               chr10:21400887-21400491 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 123
               

               Conread position:
               5-409
               

               Cow position:
               chr10:41157236-41157627 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 29
               

               Conread position:
               5-409
               

               Cow position:
               chr10:54059566-54059176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 44
               

               Conread position:
               5-416
               

               Cow position:
               chr10:57559766-57559362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 53
               

               Conread position:
               12-358
               

               Cow position:
               chr10:42747893-42748216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               347
               

               Alignm identity:
               225
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               16-381
               

               Cow position:
               chr10:38538698-38538347 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               340, 56
               

               Conread position:
               18-381
               

               Cow position:
               chr10:41566908-41567257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               339, 61
               

               Conread position:
               23-296
               

               Cow position:
               chr10:13366050-13365781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               200
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               60, 104
               

               Conread position:
               28-417
               

               Cow position:
               chr10:8289791-8290172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               329, 100
               

               Conread position:
               30-380
               

               Cow position:
               chr10:46191184-46191507 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               62, 0
               

               Conread position:
               30-425
               

               Cow position:
               chr10:19496467-19496091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               273
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               327, 38
               

               Conread position:
               40-601
               

               Cow position:
               chr10:31537147-31537688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               572
               

               Alignm identity:
               366
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               12, 53
               

               Conread position:
               48-429
               

               Cow position:
               chr10:41351926-41351566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               265
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               162, 31
               

               Conread position:
               51-380
               

               Cow position:
               chr10:39904746-39905074 (view UCSC Genome Browser custom track)
               

               Alignm length:
               334
               

               Alignm identity:
               233
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               7, 85
               

               Conread position:
               54-308
               

               Cow position:
               chr10:65307957-65308200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               98-383
               

               Cow position:
               chr10:4499557-4499833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               10, 38
               

               Conread position:
               137-381
               

               Cow position:
               chr10:39854109-39853864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               180
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               158, 170
               

               Conread position:
               137-384
               

               Cow position:
               chr10:22842686-22842924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               248
               

               Alignm identity:
               173
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               111, 0
               

               Conread position:
               137-385
               

               Cow position:
               chr10:24313923-24313681 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               171
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               34, 43
               

               Conread position:
               139-381
               

               Cow position:
               chr10:16925442-16925686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               245
               

               Alignm identity:
               183
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 0
               

               Conread position:
               141-381
               

               Cow position:
               chr10:46694466-46694226 (view UCSC Genome Browser custom track)
               

               Alignm length:
               244
               

               Alignm identity:
               186
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               26, 31
               

               Conread position:
               141-437
               

               Cow position:
               chr10:66175991-66175703 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               223, 37
               

               Conread position:
               159-381
               

               Cow position:
               chr10:2123336-2123112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               225
               

               Alignm identity:
               171
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               183-379
               

               Cow position:
               chr10:34318338-34318143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               174, 14
               

               Conread position:
               211-378
               

               Cow position:
               chr10:40152475-40152308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               169
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               146, 161
               

               Conread position:
               232-409
               

               Cow position:
               chr10:55093242-55093421 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               130
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               125, 85
               

               Conread position:
               237-358
               

               Cow position:
               chr10:25454595-25454716 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               98
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               273-379
               

               Cow position:
               chr10:28931984-28931877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               87
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               383-597
               

               Cow position:
               chr10:49310698-49310913 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               164
               

               Alignm E-value:
               7.00649e-43
               

               Alignm gaps (pig, cow):
               156, 0
               

               Conread position:
               384-480
               

               Cow position:
               chr10:46694163-46694067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               97
               

               Alignm identity:
               83
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               384-506
               

               Cow position:
               chr10:47157161-47157283 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               99
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               68, 88
               

               Conread position:
               384-508
               

               Cow position:
               chr10:10477928-10477798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               131
               

               Alignm identity:
               104
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               384-509
               

               Cow position:
               chr10:39853797-39853672 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               104
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               384-509
               

               Cow position:
               chr10:62216819-62216945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               101, 0
               

               Conread position:
               384-509
               

               Cow position:
               chr10:62778560-62778686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               106
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               384-516
               

               Cow position:
               chr10:34686106-34686239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               104
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               384-598
               

               Cow position:
               chr10:29696448-29696659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               156
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               169, 37
               

               Conread position:
               384-599
               

               Cow position:
               chr10:10415611-10415814 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               46, 92
               

               Conread position:
               384-599
               

               Cow position:
               chr10:14860179-14860393 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               163
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               116, 55
               

               Conread position:
               385-496
               

               Cow position:
               chr10:13365656-13365545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               112
               

               Alignm identity:
               93
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               385-538
               

               Cow position:
               chr10:14952083-14952236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               154
               

               Alignm identity:
               111
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               385-579
               

               Cow position:
               chr10:22842963-22843159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               147
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               153, 62
               

               Conread position:
               385-599
               

               Cow position:
               chr10:8328055-8327846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               159
               

               Alignm E-value:
               8e-34
               

               Alignm gaps (pig, cow):
               151, 36
               

               Conread position:
               385-599
               

               Cow position:
               chr10:15861923-15861705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               221
               

               Alignm identity:
               173
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               151, 59
               

               Conread position:
               385-599
               

               Cow position:
               chr10:60192345-60192556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               153
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               61, 77
               

               Conread position:
               385-601
               

               Cow position:
               chr10:24298640-24298428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               177
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 51
               

               Conread position:
               385-711
               

               Cow position:
               chr10:54979257-54978939 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 96
               

               Conread position:
               385-897
               

               Cow position:
               chr10:42628837-42629356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               393
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               340, 240
               

               Conread position:
               385-922
               

               Cow position:
               chr10:38546011-38545476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               549
               

               Alignm identity:
               406
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               306, 177
               

               Conread position:
               385-947
               

               Cow position:
               chr10:31524012-31524548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               574
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               310, 219
               

               Conread position:
               386-495
               

               Cow position:
               chr10:25359614-25359723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               90
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-495
               

               Cow position:
               chr10:51952403-51952298 (view UCSC Genome Browser custom track)
               

               Alignm length:
               110
               

               Alignm identity:
               92
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:280406-280289 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:14804051-14804168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:19496071-19495954 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               100
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:21400456-21400339 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:25565043-25564926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:32578504-32578620 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:41157662-41157779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:41877133-41877250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               95
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-503
               

               Cow position:
               chr10:47906993-47907110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-507
               

               Cow position:
               chr10:57559321-57559200 (view UCSC Genome Browser custom track)
               

               Alignm length:
               122
               

               Alignm identity:
               100
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               chr10:11685456-11685334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-32
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               chr10:19758563-19758685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               chr10:19802768-19802890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               104
               

               Alignm E-value:
               6e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               chr10:39041087-39040965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               94
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-508
               

               Cow position:
               chr10:56064888-56065010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:1375746-1375871 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:2123047-2122924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:21487130-21487253 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:25498567-25498690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               103
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:32650948-32651071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-509
               

               Cow position:
               chr10:38345147-38345024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-521
               

               Cow position:
               chr10:19511821-19511956 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               100
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-530
               

               Cow position:
               chr10:124525-124669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               145
               

               Alignm identity:
               106
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               386-532
               

               Cow position:
               chr10:40152240-40152093 (view UCSC Genome Browser custom track)
               

               Alignm length:
               148
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               386-538
               

               Cow position:
               chr10:39179998-39180154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               118, 145
               

               Conread position:
               386-584
               

               Cow position:
               chr10:20371759-20371565 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               101, 50
               

               Conread position:
               386-601
               

               Cow position:
               chr10:33346815-33347029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               173
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 0
               

               Conread position:
               387-503
               

               Cow position:
               chr10:21740536-21740420 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               99
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               387-503
               

               Cow position:
               chr10:41567319-41567434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               98
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               388-485
               

               Cow position:
               chr10:19497099-19497002 (view UCSC Genome Browser custom track)
               

               Alignm length:
               98
               

               Alignm identity:
               85
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               388-503
               

               Cow position:
               chr10:39817146-39817031 (view UCSC Genome Browser custom track)
               

               Alignm length:
               116
               

               Alignm identity:
               101
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               388-536
               

               Cow position:
               chr10:37770038-37770187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               150
               

               Alignm identity:
               110
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               119, 0
               

               Conread position:
               390-503
               

               Cow position:
               chr10:4192007-4191894 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               97
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               391-501
               

               Cow position:
               chr10:68599073-68598963 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               93
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               391-599
               

               Cow position:
               chr10:46191578-46191781 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-39
               

               Alignm gaps (pig, cow):
               147, 70
               

               Conread position:
               392-508
               

               Cow position:
               chr10:8290199-8290315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               117
               

               Alignm identity:
               92
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               396-591
               

               Cow position:
               chr10:3543363-3543179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               196
               

               Alignm identity:
               140
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               397-538
               

               Cow position:
               chr10:42679599-42679741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               143
               

               Alignm identity:
               110
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               402-509
               

               Cow position:
               chr10:24061575-24061468 (view UCSC Genome Browser custom track)
               

               Alignm length:
               108
               

               Alignm identity:
               91
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               406-606
               

               Cow position:
               chr10:38847580-38847778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               138
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               142, 38
               

               Conread position:
               413-599
               

               Cow position:
               chr10:28931570-28931383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               110, 8
               

               Conread position:
               443-694
               

               Cow position:
               chr10:8339168-8339419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               131, 29
               

               Conread position:
               513-856
               

               Cow position:
               chr10:33347023-33347386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               249
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               43, 142
               

               Conread position:
               597-948
               

               Cow position:
               chr10:28931299-28930938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 46
               

               Conread position:
               614-948
               

               Cow position:
               chr10:46191830-46192153 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               242
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               24, 9
               

               Conread position:
               630-911
               

               Cow position:
               chr10:60192676-60192951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               202, 81
               

               Conread position:
               639-864
               

               Cow position:
               chr10:13364381-13364144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               639-864
               

               Cow position:
               chr10:13365571-13365334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               176
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               657-946
               

               Cow position:
               chr10:15860738-15860460 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               208
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               80, 39
               

               Conread position:
               659-947
               

               Cow position:
               chr10:14861416-14861711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               224
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               78, 31
               

               Conread position:
               686-947
               

               Cow position:
               chr10:38847900-38848165 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               34, 82
               

               Conread position:
               691-945
               

               Cow position:
               chr10:21900589-21900331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               48, 222
               

               Conread position:
               698-948
               

               Cow position:
               chr10:32064769-32065038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               192
               

               Alignm E-value:
               7e-33
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               702-947
               

               Cow position:
               chr10:3543025-3542775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               23, 133
               

               Conread position:
               736-947
               

               Cow position:
               chr10:20370980-20370780 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               750-943
               

               Cow position:
               chr10:42749019-42749218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               23, 112
               

               Conread position:
               770-945
               

               Cow position:
               chr10:39041025-39040852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               178
               

               Alignm identity:
               127
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 65
               

               Conread position:
               775-945
               

               Cow position:
               chr10:42110613-42110785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               59, 23
               

               Conread position:
               801-947
               

               Cow position:
               chr10:17432952-17432804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               151
               

               Alignm identity:
               126
               

               Alignm E-value:
               3e-34
               

               Alignm gaps (pig, cow):
               71, 35
               

               Conread position:
               825-947
               

               Cow position:
               chr10:124641-124763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               76, 19
               

               Conread position:
               825-947
               

               Cow position:
               chr10:19511937-19512057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               99
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               75, 19
               

               Conread position:
               825-947
               

               Cow position:
               chr10:21487246-21487368 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               98
               

               Alignm E-value:
               8e-23
               

               Alignm gaps (pig, cow):
               76, 42
               

               Conread position:
               825-947
               

               Cow position:
               chr10:29846321-29846199 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               76, 42
               

               Conread position:
               825-947
               

               Cow position:
               chr10:30685182-30685062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               123
               

               Alignm identity:
               96
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 0
               

               Conread position:
               825-947
               

               Cow position:
               chr10:38345031-38344908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               99
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               20, 43
               

               Conread position:
               825-947
               

               Cow position:
               chr10:38538174-38538051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               20, 44
               

               Conread position:
               825-947
               

               Cow position:
               chr10:57989663-57989541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               97
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               76, 42
               

               Conread position:
               825-947
               

               Cow position:
               chr10:62216938-62217061 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               98
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               33, 19
               

               Conread position:
               825-947
               

               Cow position:
               chr10:62408520-62408398 (view UCSC Genome Browser custom track)
               

               Alignm length:
               124
               

               Alignm identity:
               96
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               76, 36
               

               Conread position:
               831-947
               

               Cow position:
               chr10:25359736-25359852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               118
               

               Alignm identity:
               97
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               70, 36
               

               Conread position:
               835-947
               

               Cow position:
               chr10:54978912-54978799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               114
               

               Alignm identity:
               94
               

               Alignm E-value:
               9e-25
               

               Alignm gaps (pig, cow):
               65, 0
               
Show alignments to all cow chromosomes.