Cow genome map
| Conread name: | Ss1.1-ruio34_e2.5 |
| Conread position: | 1-136 |
| Cow position: | chr12:601345-601210 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-278 |
| Cow position: | chr12:14662905-14662640 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1-295 |
| Cow position: | chr12:48404755-48405032 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 207, 78 |
| Conread position: | 1-375 |
| Cow position: | chr12:20998414-20998055 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 0 |
| Conread position: | 1-375 |
| Cow position: | chr12:21901653-21902009 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 7 |
| Conread position: | 1-380 |
| Cow position: | chr12:6406941-6406574 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 117 |
| Conread position: | 1-380 |
| Cow position: | chr12:21207403-21207768 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 1-381 |
| Cow position: | chr12:2504-2874 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 124 |
| Conread position: | 1-381 |
| Cow position: | chr12:1402199-1402566 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 1-381 |
| Cow position: | chr12:2282252-2282621 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 12 |
| Conread position: | 1-381 |
| Cow position: | chr12:8310891-8311256 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 124 |
| Conread position: | 1-381 |
| Cow position: | chr12:15951550-15951185 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 81 |
| Conread position: | 1-381 |
| Cow position: | chr12:21254950-21254581 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-381 |
| Cow position: | chr12:21941485-21941840 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 356, 76 |
| Conread position: | 1-381 |
| Cow position: | chr12:22206039-22205672 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 71 |
| Conread position: | 1-381 |
| Cow position: | chr12:27933240-27932870 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 122 |
| Conread position: | 1-381 |
| Cow position: | chr12:32653253-32653619 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 1-381 |
| Cow position: | chr12:42860109-42859752 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 122 |
| Conread position: | 1-409 |
| Cow position: | chr12:3360619-3361009 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 56 |
| Conread position: | 1-409 |
| Cow position: | chr12:8678413-8678017 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 1-409 |
| Cow position: | chr12:21426402-21426799 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 76 |
| Conread position: | 1-409 |
| Cow position: | chr12:37558265-37558660 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 1-409 |
| Cow position: | chr12:43031677-43031279 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 111 |
| Conread position: | 1-417 |
| Cow position: | chr12:11097947-11098357 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 1-417 |
| Cow position: | chr12:25101353-25100946 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 78 |
| Conread position: | 1-425 |
| Cow position: | chr12:26141519-26141934 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 127 |
| Conread position: | 2-367 |
| Cow position: | chr12:21499825-21500177 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 251 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 192, 88 |
| Conread position: | 7-418 |
| Cow position: | chr12:22332334-22332740 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 62 |
| Conread position: | 21-377 |
| Cow position: | chr12:28766291-28765948 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 104 |
| Conread position: | 32-381 |
| Cow position: | chr12:45261353-45261690 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 7 |
| Conread position: | 130-411 |
| Cow position: | chr12:8982593-8982316 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 227, 137 |
| Conread position: | 137-366 |
| Cow position: | chr12:3632424-3632198 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 352-509 |
| Cow position: | chr12:31544883-31545041 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 383-503 |
| Cow position: | chr12:2936-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 54, 99 |
| Conread position: | 384-509 |
| Cow position: | chr12:22332762-22332887 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 384-509 |
| Cow position: | chr12:45261761-45261886 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 385-503 |
| Cow position: | chr12:23240143-23240260 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 385-508 |
| Cow position: | chr12:21941904-21942030 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 22 |
| Conread position: | 385-509 |
| Cow position: | chr12:5861292-5861416 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 7, 93 |
| Conread position: | 385-531 |
| Cow position: | chr12:2838715-2838576 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 385-538 |
| Cow position: | chr12:2282685-2282835 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 386-503 |
| Cow position: | chr12:3361044-3361161 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr12:32653684-32653801 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr12:37558696-37558813 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 99 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-503 |
| Cow position: | chr12:43031244-43031128 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 97 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 386-508 |
| Cow position: | chr12:22205607-22205486 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 386-508 |
| Cow position: | chr12:25100921-25100799 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-508 |
| Cow position: | chr12:27932805-27932683 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-508 |
| Cow position: | chr12:33986302-33986424 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr12:8311321-8311444 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr12:14662493-14662370 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-509 |
| Cow position: | chr12:21198100-21198223 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 94 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-544 |
| Cow position: | chr12:28765879-28765721 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 386-544 |
| Cow position: | chr12:42859687-42859527 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 387-495 |
| Cow position: | chr12:21426835-21426943 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 387-531 |
| Cow position: | chr12:21902078-21902225 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 49, 69 |
| Conread position: | 390-567 |
| Cow position: | chr12:18501178-18501347 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 61 |
| Conread position: | 392-753 |
| Cow position: | chr12:15951118-15950760 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 82 |
| Conread position: | 399-508 |
| Cow position: | chr12:4157530-4157639 (view UCSC Genome Browser custom track) |
| Alignm length: | 110 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 441-575 |
| Cow position: | chr12:48405445-48405577 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 97, 48 |
| Conread position: | 668-947 |
| Cow position: | chr12:348494-348779 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 34, 200 |
| Conread position: | 674-948 |
| Cow position: | chr12:21500560-21500839 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 20, 133 |
| Conread position: | 762-947 |
| Cow position: | chr12:3631674-3631490 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 825-945 |
| Cow position: | chr12:14662377-14662257 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 99 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 76, 13 |
| Conread position: | 825-947 |
| Cow position: | chr12:6406395-6406273 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 825-947 |
| Cow position: | chr12:11098498-11098620 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 825-947 |
| Cow position: | chr12:22205492-22205370 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 825-947 |
| Cow position: | chr12:25100805-25100684 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 825-947 |
| Cow position: | chr12:42859571-42859451 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 19 |
Show alignments to all cow chromosomes.