Cow genome map

Conread name: Ss1.1-ruio34_e2.5

Conread position: 1-147
Cow position:
Alignm length: 148
Alignm identity: 111
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 138, 0

Conread position: 1-239
Cow position:
Alignm length: 239
Alignm identity: 168
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 124, 0

Conread position: 1-310
Cow position:
Alignm length: 315
Alignm identity: 213
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 78, 142

Conread position: 1-353
Cow position:
Alignm length: 354
Alignm identity: 226
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 283, 104

Conread position: 1-358
Cow position:
Alignm length: 358
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 0

Conread position: 1-375
Cow position:
Alignm length: 377
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 21

Conread position: 1-375
Cow position:
Alignm length: 376
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 75

Conread position: 1-377
Cow position:
Alignm length: 378
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 92

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 77

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 122

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 77

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 360, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 76

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-381
Cow position:
Alignm length: 383
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 92

Conread position: 1-381
Cow position:
Alignm length: 385
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 79

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 34

Conread position: 1-381
Cow position:
Alignm length: 382
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 128

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-384
Cow position:
Alignm length: 385
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 77

Conread position: 1-397
Cow position:
Alignm length: 399
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-408
Cow position:
Alignm length: 411
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 77

Conread position: 1-408
Cow position:
Alignm length: 413
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 126

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 27

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 122

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 127

Conread position: 1-409
Cow position:
Alignm length: 412
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-417
Cow position:
Alignm length: 422
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 124

Conread position: 1-418
Cow position:
Alignm length: 424
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 123

Conread position: 1-421
Cow position:
Alignm length: 422
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 78

Conread position: 1-511
Cow position:
Alignm length: 513
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 356, 48

Conread position: 1-542
Cow position:
Alignm length: 545
Alignm identity: 259
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 520, 78

Conread position: 2-380
Cow position:
Alignm length: 380
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 123

Conread position: 2-381
Cow position:
Alignm length: 392
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 129

Conread position: 5-366
Cow position:
Alignm length: 364
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 118

Conread position: 5-372
Cow position:
Alignm length: 370
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 120

Conread position: 5-379
Cow position:
Alignm length: 376
Alignm identity: 234
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 352, 133

Conread position: 5-381
Cow position:
Alignm length: 378
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 25

Conread position: 13-381
Cow position:
Alignm length: 371
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 42

Conread position: 21-409
Cow position:
Alignm length: 392
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 58

Conread position: 30-381
Cow position:
Alignm length: 354
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 28

Conread position: 60-409
Cow position:
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 68

Conread position: 66-380
Cow position:
Alignm length: 316
Alignm identity: 221
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 291, 59

Conread position: 144-898
Cow position:
Alignm length: 765
Alignm identity: 567
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 107

Conread position: 165-380
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 192, 60

Conread position: 181-381
Cow position:
Alignm length: 207
Alignm identity: 146
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 63, 12

Conread position: 211-409
Cow position:
Alignm length: 206
Alignm identity: 149
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 63, 0

Conread position: 212-381
Cow position:
Alignm length: 171
Alignm identity: 133
Alignm E-value: 8e-35
Alignm gaps (pig, cow): 145, 0

Conread position: 224-384
Cow position:
Alignm length: 164
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 72, 8

Conread position: 384-487
Cow position:
Alignm length: 105
Alignm identity: 88
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 60, 0

Conread position: 384-501
Cow position:
Alignm length: 118
Alignm identity: 99
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 384-506
Cow position:
Alignm length: 123
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 0

Conread position: 384-508
Cow position:
Alignm length: 125
Alignm identity: 105
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 109
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 384-509
Cow position:
Alignm length: 128
Alignm identity: 106
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 384-509
Cow position:
Alignm length: 126
Alignm identity: 104
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 64, 0

Conread position: 384-530
Cow position:
Alignm length: 149
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 384-758
Cow position:
Alignm length: 391
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 115

Conread position: 385-503
Cow position:
Alignm length: 119
Alignm identity: 94
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 385-595
Cow position:
Alignm length: 213
Alignm identity: 155
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 133, 63

Conread position: 385-947
Cow position:
Alignm length: 584
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 131

Conread position: 385-948
Cow position:
Alignm length: 586
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 163

Conread position: 386-480
Cow position:
Alignm length: 95
Alignm identity: 84
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 386-482
Cow position:
Alignm length: 97
Alignm identity: 82
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 386-494
Cow position:
Alignm length: 109
Alignm identity: 89
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-495
Cow position:
Alignm length: 110
Alignm identity: 96
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 100
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 101
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 119
Alignm identity: 102
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 11, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 98
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 96
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 101
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 100
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 101
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-503
Cow position:
Alignm length: 118
Alignm identity: 101
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 386-508
Cow position:
Alignm length: 123
Alignm identity: 105
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 94
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 386-509
Cow position:
Alignm length: 125
Alignm identity: 96
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 50, 0

Conread position: 386-509
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 386-510
Cow position:
Alignm length: 125
Alignm identity: 97
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 386-530
Cow position:
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 121, 140

Conread position: 386-532
Cow position:
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 386-537
Cow position:
Alignm length: 153
Alignm identity: 118
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 121, 85

Conread position: 386-544
Cow position:
Alignm length: 159
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 119, 0

Conread position: 386-544
Cow position:
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 137, 0

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 98
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 387-509
Cow position:
Alignm length: 123
Alignm identity: 101
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 388-503
Cow position:
Alignm length: 116
Alignm identity: 99
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 388-508
Cow position:
Alignm length: 121
Alignm identity: 93
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 388-509
Cow position:
Alignm length: 122
Alignm identity: 96
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 391-541
Cow position:
Alignm length: 152
Alignm identity: 115
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 143, 32

Conread position: 393-509
Cow position:
Alignm length: 117
Alignm identity: 100
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 418-611
Cow position:
Alignm length: 195
Alignm identity: 144
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 110, 17

Conread position: 468-937
Cow position:
Alignm length: 478
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 27

Conread position: 468-942
Cow position:
Alignm length: 485
Alignm identity: 306
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 16, 29

Conread position: 597-892
Cow position:
Alignm length: 309
Alignm identity: 205
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 110, 16

Conread position: 597-947
Cow position:
Alignm length: 361
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 53

Conread position: 609-947
Cow position:
Alignm length: 356
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 53

Conread position: 705-947
Cow position:
Alignm length: 251
Alignm identity: 181
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 21, 159

Conread position: 707-947
Cow position:
Alignm length: 250
Alignm identity: 190
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 18, 65

Conread position: 720-947
Cow position:
Alignm length: 236
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 108

Conread position: 730-937
Cow position:
Alignm length: 211
Alignm identity: 148
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 38, 107

Conread position: 750-948
Cow position:
Alignm length: 213
Alignm identity: 149
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 777-944
Cow position:
Alignm length: 170
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 68

Conread position: 825-945
Cow position:
Alignm length: 122
Alignm identity: 96
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 76, 13

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 99
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 76, 42

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 97
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 75, 0

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 75, 18

Conread position: 825-947
Cow position:
Alignm length: 124
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 77, 19

Conread position: 825-948
Cow position:
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 28, 19

Conread position: 830-947
Cow position:
Alignm length: 119
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 71, 37

Conread position: 834-947
Cow position:
Alignm length: 115
Alignm identity: 95
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 66, 33

Conread position: 837-947
Cow position:
Alignm length: 112
Alignm identity: 92
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 64, 30

Show alignments to all cow chromosomes.